assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002240375.1_ASM224037v1	NZ_CP016766	Lactobacillus agilis strain La3, complete genome	1	858268-858430	1,1	PILER-CR,CRISPRCasFinder	no		Cas14u_CAS-V,cas3,c2c9_V-U4,cas14k,csa3,cas14j,WYL,DinG,DEDDh	Orphan	TAAATATTTACATTCCTCTTAAGTTAAATAGAATC,TATTTACATTCCTCTTAAGTTAAATAGAATC	35,31	0	0	NA	NA	NA:NA	2,2	2	Orphan	Cas14u_CAS-V,cas3,c2c9_V-U4,cas14k,csa3,cas14j,WYL,DinG,DEDDh	NA,NA|153aa|down_9|NZ_CP016766.1_867267_867726_-	NA|261aa|up_9|NZ_CP016766.1_843355_844138_-	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3)	NA|235aa|up_8|NZ_CP016766.1_844124_844829_-	COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only]	NA|380aa|up_7|NZ_CP016766.1_844899_846039_-	PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated	NA|616aa|up_6|NZ_CP016766.1_846052_847900_-	PRK05667, dnaG, DNA primase; Validated	NA|693aa|up_5|NZ_CP016766.1_848052_850131_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|306aa|up_4|NZ_CP016766.1_850132_851050_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|587aa|up_3|NZ_CP016766.1_851523_853284_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|322aa|up_2|NZ_CP016766.1_853382_854348_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1102aa|up_1|NZ_CP016766.1_854476_857782_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|61aa|up_0|NZ_CP016766.1_857911_858094_+	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|237aa|down_0|NZ_CP016766.1_858710_859421_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|465aa|down_1|NZ_CP016766.1_859762_861157_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|286aa|down_2|NZ_CP016766.1_861264_862122_-	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|212aa|down_3|NZ_CP016766.1_862223_862859_-	pfam06197, DUF998, Protein of unknown function (DUF998)	NA|161aa|down_4|NZ_CP016766.1_862929_863412_-	pfam07155, ECF-ribofla_trS, ECF-type riboflavin transporter, S component	NA|284aa|down_5|NZ_CP016766.1_863386_864238_-	PRK07105, PRK07105, pyridoxamine kinase; Validated	NA|208aa|down_6|NZ_CP016766.1_864359_864983_+	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily	NA|302aa|down_7|NZ_CP016766.1_865031_865937_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|364aa|down_8|NZ_CP016766.1_866066_867158_-	cd08171, GlyDH-like, Glycerol dehydrogenase-like	NA|153aa|down_9|NZ_CP016766.1_867267_867726_-	NA
GCF_002240375.1_ASM224037v1	NZ_CP016766	Lactobacillus agilis strain La3, complete genome	2	957574-957937	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no		Cas14u_CAS-V,cas3,c2c9_V-U4,cas14k,csa3,cas14j,WYL,DinG,DEDDh	Orphan	ATTTACATTCCTCTTAAGTTAAATAGAATC,ATTTACATTCCTCTTAAGTTAAATAGAATC,ATTTACATTCCTCTTAAGTTAAATAGAATC	30,30,30	1	1	957604-957641	NZ_CP016766.1_971551-971588	NA:NA:NA	5,5,5	5	Orphan	Cas14u_CAS-V,cas3,c2c9_V-U4,cas14k,csa3,cas14j,WYL,DinG,DEDDh	NA|67aa|up_1|NZ_CP016766.1_956706_956907_-,NA|84aa|up_0|NZ_CP016766.1_956899_957151_-,NA|77aa|down_5|NZ_CP016766.1_964201_964432_+	NA|395aa|up_9|NZ_CP016766.1_949626_950811_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|443aa|up_8|NZ_CP016766.1_950794_952123_-	cd05681, M20_dipept_Sso-CP2, uncharacterized M20 dipeptidase	NA|298aa|up_7|NZ_CP016766.1_952245_953139_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|271aa|up_6|NZ_CP016766.1_953135_953948_+	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family	NA|300aa|up_5|NZ_CP016766.1_954018_954918_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|179aa|up_4|NZ_CP016766.1_954914_955451_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|153aa|up_3|NZ_CP016766.1_955723_956182_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|127aa|up_2|NZ_CP016766.1_956183_956564_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|67aa|up_1|NZ_CP016766.1_956706_956907_-	NA	NA|84aa|up_0|NZ_CP016766.1_956899_957151_-	NA	NA|372aa|down_0|NZ_CP016766.1_958827_959943_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|198aa|down_1|NZ_CP016766.1_960114_960708_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|85aa|down_2|NZ_CP016766.1_960878_961133_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|325aa|down_3|NZ_CP016766.1_961408_962383_+	COG4983, COG4983, Uncharacterized conserved protein [Function unknown]	NA|564aa|down_4|NZ_CP016766.1_962441_964133_+	TIGR01613, putative_primase, phage/plasmid primase, P4 family, C-terminal domain	NA|77aa|down_5|NZ_CP016766.1_964201_964432_+	NA	NA|110aa|down_6|NZ_CP016766.1_964431_964761_+	pfam05521, Phage_H_T_join, Phage head-tail joining protein	NA|117aa|down_7|NZ_CP016766.1_965054_965405_+	pfam01844, HNH, HNH endonuclease	NA|150aa|down_8|NZ_CP016766.1_965571_966021_+	pfam05119, Terminase_4, Phage terminase, small subunit	NA|571aa|down_9|NZ_CP016766.1_966022_967735_+	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only]
GCF_002240375.1_ASM224037v1	NZ_CP016766	Lactobacillus agilis strain La3, complete genome	3	974797-975294	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no		Cas14u_CAS-V,cas3,c2c9_V-U4,cas14k,csa3,cas14j,WYL,DinG,DEDDh	Orphan	TATTTACATTCCTCTTAAGTTAAATAAATTT,ATTTACATTCCTCTTAAGTTAAATAAATTT,ATTTACATTCCTCTTAAGTTAAATAAAT	31,30,28	0	0	NA	NA	NA:NA:NA	7,7,6	7	Orphan	Cas14u_CAS-V,cas3,c2c9_V-U4,cas14k,csa3,cas14j,WYL,DinG,DEDDh	NA|138aa|up_2|NZ_CP016766.1_970786_971200_+,NA|168aa|up_0|NZ_CP016766.1_973002_973506_+,NA|69aa|down_1|NZ_CP016766.1_976041_976248_-,NA|91aa|down_2|NZ_CP016766.1_976406_976679_-,NA|67aa|down_4|NZ_CP016766.1_977354_977555_-,NA|622aa|down_6|NZ_CP016766.1_979671_981537_-,NA|73aa|down_9|NZ_CP016766.1_983227_983446_-	NA|110aa|up_9|NZ_CP016766.1_964431_964761_+	pfam05521, Phage_H_T_join, Phage head-tail joining protein	NA|117aa|up_8|NZ_CP016766.1_965054_965405_+	pfam01844, HNH, HNH endonuclease	NA|150aa|up_7|NZ_CP016766.1_965571_966021_+	pfam05119, Terminase_4, Phage terminase, small subunit	NA|571aa|up_6|NZ_CP016766.1_966022_967735_+	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only]	NA|353aa|up_5|NZ_CP016766.1_967879_968938_+	TIGR01537, portal_protein, phage portal protein, HK97 family	NA|496aa|up_4|NZ_CP016766.1_968942_970430_+	pfam04586, Peptidase_S78, Caudovirus prohead serine protease	NA|88aa|up_3|NZ_CP016766.1_970429_970693_+	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins	NA|138aa|up_2|NZ_CP016766.1_970786_971200_+	NA	NA|340aa|up_1|NZ_CP016766.1_971820_972840_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|168aa|up_0|NZ_CP016766.1_973002_973506_+	NA	NA|64aa|down_0|NZ_CP016766.1_975676_975868_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|69aa|down_1|NZ_CP016766.1_976041_976248_-	NA	NA|91aa|down_2|NZ_CP016766.1_976406_976679_-	NA	NA|93aa|down_3|NZ_CP016766.1_976681_976960_-	PRK15126, PRK15126, HMP-PP phosphatase	NA|67aa|down_4|NZ_CP016766.1_977354_977555_-	NA	NA|83aa|down_5|NZ_CP016766.1_979073_979322_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|622aa|down_6|NZ_CP016766.1_979671_981537_-	NA	NA|300aa|down_7|NZ_CP016766.1_981681_982581_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|179aa|down_8|NZ_CP016766.1_982577_983114_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|73aa|down_9|NZ_CP016766.1_983227_983446_-	NA
GCF_002240375.1_ASM224037v1	NZ_CP016766	Lactobacillus agilis strain La3, complete genome	4	977812-978836	4,4,3	PILER-CR,CRISPRCasFinder,CRT	no		Cas14u_CAS-V,cas3,c2c9_V-U4,cas14k,csa3,cas14j,WYL,DinG,DEDDh	Orphan	ATTTACATTCCTCTTAAGTTAAATAGAATC,ATTTACATTCCTCTTAAGTTAAATAGAATC,ATTTACATTCCTCTTAAGTTAAATAGAATC	30,30,30	0	0	NA	NA	NA:NA:NA	15,15,15	15	Orphan	Cas14u_CAS-V,cas3,c2c9_V-U4,cas14k,csa3,cas14j,WYL,DinG,DEDDh	NA|138aa|up_7|NZ_CP016766.1_970786_971200_+,NA|168aa|up_5|NZ_CP016766.1_973002_973506_+,NA|69aa|up_3|NZ_CP016766.1_976041_976248_-,NA|91aa|up_2|NZ_CP016766.1_976406_976679_-,NA|67aa|up_0|NZ_CP016766.1_977354_977555_-,NA|622aa|down_1|NZ_CP016766.1_979671_981537_-,NA|73aa|down_4|NZ_CP016766.1_983227_983446_-	NA|496aa|up_9|NZ_CP016766.1_968942_970430_+	pfam04586, Peptidase_S78, Caudovirus prohead serine protease	NA|88aa|up_8|NZ_CP016766.1_970429_970693_+	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins	NA|138aa|up_7|NZ_CP016766.1_970786_971200_+	NA	NA|340aa|up_6|NZ_CP016766.1_971820_972840_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|168aa|up_5|NZ_CP016766.1_973002_973506_+	NA	NA|64aa|up_4|NZ_CP016766.1_975676_975868_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|69aa|up_3|NZ_CP016766.1_976041_976248_-	NA	NA|91aa|up_2|NZ_CP016766.1_976406_976679_-	NA	NA|93aa|up_1|NZ_CP016766.1_976681_976960_-	PRK15126, PRK15126, HMP-PP phosphatase	NA|67aa|up_0|NZ_CP016766.1_977354_977555_-	NA	NA|83aa|down_0|NZ_CP016766.1_979073_979322_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|622aa|down_1|NZ_CP016766.1_979671_981537_-	NA	NA|300aa|down_2|NZ_CP016766.1_981681_982581_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|179aa|down_3|NZ_CP016766.1_982577_983114_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|73aa|down_4|NZ_CP016766.1_983227_983446_-	NA	NA|308aa|down_5|NZ_CP016766.1_983757_984681_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|228aa|down_6|NZ_CP016766.1_984696_985380_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|372aa|down_7|NZ_CP016766.1_985386_986502_-	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|449aa|down_8|NZ_CP016766.1_986521_987868_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|505aa|down_9|NZ_CP016766.1_987887_989402_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter
