assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002238315.1_ASM223831v1	NZ_CP020082	Streptococcus pyogenes strain STAB120304 chromosome, complete genome	1	118496-118685	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AAGAAGTCCCAGAAGTTCCAAGCGAGAGCTTAGAACCTGCGCTTCC	46	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|222aa|down_5|NZ_CP020082.1_130500_131166_-	NA|257aa|up_9|NZ_CP020082.1_108764_109535_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|356aa|up_8|NZ_CP020082.1_109582_110650_-	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase	NA|98aa|up_7|NZ_CP020082.1_111105_111399_+	pfam15513, DUF4651, Domain of unknown function (DUF4651)	NA|106aa|up_6|NZ_CP020082.1_111395_111713_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|209aa|up_5|NZ_CP020082.1_111730_112357_+	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|132aa|up_4|NZ_CP020082.1_112507_112903_+	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|214aa|up_3|NZ_CP020082.1_113162_113804_-	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]	NA|326aa|up_2|NZ_CP020082.1_113823_114801_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|291aa|up_1|NZ_CP020082.1_114787_115660_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|498aa|up_0|NZ_CP020082.1_115806_117300_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|566aa|down_0|NZ_CP020082.1_120685_122383_+	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|311aa|down_1|NZ_CP020082.1_122465_123398_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|292aa|down_2|NZ_CP020082.1_123375_124251_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|286aa|down_3|NZ_CP020082.1_124264_125122_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|1711aa|down_4|NZ_CP020082.1_125191_130324_+	pfam17961, Big_8, Bacterial Ig domain	NA|222aa|down_5|NZ_CP020082.1_130500_131166_-	NA	NA|469aa|down_6|NZ_CP020082.1_131425_132832_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|304aa|down_7|NZ_CP020082.1_132899_133811_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|395aa|down_8|NZ_CP020082.1_133931_135116_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|220aa|down_9|NZ_CP020082.1_135127_135787_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
GCF_002238315.1_ASM223831v1	NZ_CP020082	Streptococcus pyogenes strain STAB120304 chromosome, complete genome	2	1035225-1035326	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NZ_CP020082.1_1043156_1043942_+	NA|83aa|up_9|NZ_CP020082.1_1022941_1023190_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_CP020082.1_1023552_1025871_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_CP020082.1_1026399_1027722_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_CP020082.1_1027841_1029077_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_CP020082.1_1029446_1030220_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_CP020082.1_1030589_1031426_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_CP020082.1_1031441_1032071_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_CP020082.1_1032080_1032722_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_CP020082.1_1032828_1033164_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_CP020082.1_1033359_1035174_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_CP020082.1_1035349_1035907_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_CP020082.1_1036124_1037627_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_CP020082.1_1037689_1038703_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_CP020082.1_1038782_1041893_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_CP020082.1_1042077_1042449_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_CP020082.1_1042448_1043147_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_CP020082.1_1043156_1043942_+	NA	NA|205aa|down_7|NZ_CP020082.1_1044072_1044687_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|NZ_CP020082.1_1045427_1046048_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_CP020082.1_1046304_1048569_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_002238315.1_ASM223831v1	NZ_CP020082	Streptococcus pyogenes strain STAB120304 chromosome, complete genome	3	1327631-1327859	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,TTTCAATCCACTCACCCATGAAGGGTGAGAC	32,32,31	0	0	NA	NA	I-C:I-C:I-C	3,3,3	3	TypeI-U,TypeI-U?,TypeI-C	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|50aa|up_9|NZ_CP020082.1_1320398_1320548_-,NA|64aa|up_7|NZ_CP020082.1_1321319_1321511_-,NA|174aa|up_4|NZ_CP020082.1_1323070_1323592_+,NA	NA|50aa|up_9|NZ_CP020082.1_1320398_1320548_-	NA	NA|243aa|up_8|NZ_CP020082.1_1320580_1321309_-	COG3561, COG3561, Phage anti-repressor protein [Transcription]	NA|64aa|up_7|NZ_CP020082.1_1321319_1321511_-	NA	NA|120aa|up_6|NZ_CP020082.1_1322306_1322666_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|127aa|up_5|NZ_CP020082.1_1322679_1323060_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|174aa|up_4|NZ_CP020082.1_1323070_1323592_+	NA	NA|385aa|up_3|NZ_CP020082.1_1323710_1324865_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|369aa|up_2|NZ_CP020082.1_1324975_1326082_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_CP020082.1_1326124_1326748_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_CP020082.1_1326760_1327471_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_CP020082.1_1328007_1328301_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_CP020082.1_1328311_1329337_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_CP020082.1_1329333_1330008_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_CP020082.1_1330009_1330858_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NZ_CP020082.1_1330862_1332758_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|NZ_CP020082.1_1332757_1333486_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|NZ_CP020082.1_1333618_1336027_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NZ_CP020082.1_1336180_1338829_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NZ_CP020082.1_1338830_1339394_-	pfam13238, AAA_18, AAA domain	NA|132aa|down_9|NZ_CP020082.1_1339995_1340391_-	PRK07758, PRK07758, hypothetical protein; Provisional
