assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002238295.1_ASM223829v1	NZ_CP020027	Streptococcus pyogenes strain STAB090229 chromosome, complete genome	1	112496-112685	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AAGAAGTCCCAGAAGTTCCAAGCGAGAGCTTAGAACCTGCGCTTCC	46	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|222aa|down_5|NZ_CP020027.1_124500_125166_-	NA|257aa|up_9|NZ_CP020027.1_102764_103535_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|356aa|up_8|NZ_CP020027.1_103582_104650_-	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase	NA|98aa|up_7|NZ_CP020027.1_105105_105399_+	pfam15513, DUF4651, Domain of unknown function (DUF4651)	NA|106aa|up_6|NZ_CP020027.1_105395_105713_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|209aa|up_5|NZ_CP020027.1_105730_106357_+	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|132aa|up_4|NZ_CP020027.1_106507_106903_+	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|214aa|up_3|NZ_CP020027.1_107162_107804_-	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]	NA|326aa|up_2|NZ_CP020027.1_107823_108801_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|291aa|up_1|NZ_CP020027.1_108787_109660_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|498aa|up_0|NZ_CP020027.1_109806_111300_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|566aa|down_0|NZ_CP020027.1_114685_116383_+	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|311aa|down_1|NZ_CP020027.1_116465_117398_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|292aa|down_2|NZ_CP020027.1_117375_118251_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|286aa|down_3|NZ_CP020027.1_118264_119122_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|1711aa|down_4|NZ_CP020027.1_119191_124324_+	pfam17961, Big_8, Bacterial Ig domain	NA|222aa|down_5|NZ_CP020027.1_124500_125166_-	NA	NA|469aa|down_6|NZ_CP020027.1_125425_126832_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|304aa|down_7|NZ_CP020027.1_126899_127811_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|395aa|down_8|NZ_CP020027.1_127931_129116_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|220aa|down_9|NZ_CP020027.1_129127_129787_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
GCF_002238295.1_ASM223829v1	NZ_CP020027	Streptococcus pyogenes strain STAB090229 chromosome, complete genome	2	990951-991052	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NZ_CP020027.1_998882_999668_+	NA|83aa|up_9|NZ_CP020027.1_978667_978916_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_CP020027.1_979278_981597_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_CP020027.1_982125_983448_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_CP020027.1_983567_984803_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_CP020027.1_985172_985946_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_CP020027.1_986315_987152_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_CP020027.1_987167_987797_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_CP020027.1_987806_988448_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_CP020027.1_988554_988890_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_CP020027.1_989085_990900_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_CP020027.1_991075_991633_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_CP020027.1_991850_993353_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_CP020027.1_993415_994429_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_CP020027.1_994508_997619_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_CP020027.1_997803_998175_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_CP020027.1_998174_998873_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_CP020027.1_998882_999668_+	NA	NA|205aa|down_7|NZ_CP020027.1_999798_1000413_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|207aa|down_8|NZ_CP020027.1_1001153_1001774_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_CP020027.1_1002030_1004295_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_002238295.1_ASM223829v1	NZ_CP020027	Streptococcus pyogenes strain STAB090229 chromosome, complete genome	3	1241761-1241989	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,TTTCAATCCACTCACCCATGAAGGGTGAGAC	32,32,31	0	0	NA	NA	I-C:I-C:I-C	3,3,3	3	TypeI-U?,TypeI-C,TypeI-U	cas3,DinG,csm6,cas2,cas1,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA	NA|412aa|up_9|NZ_CP020027.1_1231694_1232930_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|NZ_CP020027.1_1233203_1233884_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|NZ_CP020027.1_1234025_1234499_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|NZ_CP020027.1_1234665_1235382_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|NZ_CP020027.1_1235395_1236475_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|NZ_CP020027.1_1236547_1238281_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NZ_CP020027.1_1238277_1239018_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|NZ_CP020027.1_1239105_1240212_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_CP020027.1_1240254_1240878_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_CP020027.1_1240890_1241601_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_CP020027.1_1242137_1242431_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_CP020027.1_1242441_1243467_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_CP020027.1_1243463_1244138_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_CP020027.1_1244139_1244988_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NZ_CP020027.1_1244992_1246888_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|NZ_CP020027.1_1246887_1247616_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|NZ_CP020027.1_1247748_1250157_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NZ_CP020027.1_1250310_1252959_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NZ_CP020027.1_1252960_1253524_-	pfam13238, AAA_18, AAA domain	NA|132aa|down_9|NZ_CP020027.1_1254125_1254521_-	PRK07758, PRK07758, hypothetical protein; Provisional
