assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002236855.1_ASM223685v1	NZ_CP022206	Streptococcus pyogenes strain GURSA1 chromosome, complete genome	1	858426-858526	1	CRISPRCasFinder	no		cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	Orphan	TATAATTAGACTATACCAATTTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	NA|262aa|up_6|NZ_CP022206.1_849809_850595_-,NA	NA|755aa|up_9|NZ_CP022206.1_845182_847447_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|207aa|up_8|NZ_CP022206.1_847703_848324_-	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|205aa|up_7|NZ_CP022206.1_849064_849679_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|262aa|up_6|NZ_CP022206.1_849809_850595_-	NA	NA|233aa|up_5|NZ_CP022206.1_850604_851303_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|124aa|up_4|NZ_CP022206.1_851302_851674_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|1037aa|up_3|NZ_CP022206.1_851858_854969_+	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|338aa|up_2|NZ_CP022206.1_855048_856062_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|501aa|up_1|NZ_CP022206.1_856124_857627_+	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|186aa|up_0|NZ_CP022206.1_857844_858402_+	TIGR02227, Inactive_signal_peptidase_IA	NA|605aa|down_0|NZ_CP022206.1_858577_860392_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|112aa|down_1|NZ_CP022206.1_860587_860923_+	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|214aa|down_2|NZ_CP022206.1_861029_861671_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|210aa|down_3|NZ_CP022206.1_861680_862310_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|279aa|down_4|NZ_CP022206.1_862325_863162_+	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|258aa|down_5|NZ_CP022206.1_863532_864306_+	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|412aa|down_6|NZ_CP022206.1_864675_865911_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|441aa|down_7|NZ_CP022206.1_866030_867353_-	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|773aa|down_8|NZ_CP022206.1_867882_870201_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|83aa|down_9|NZ_CP022206.1_870563_870812_+	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_002236855.1_ASM223685v1	NZ_CP022206	Streptococcus pyogenes strain GURSA1 chromosome, complete genome	2	1033264-1033827	1	CRT	no		cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	Orphan	TGGACCTACTGGACCNNNTNNNCC	24	0	0	NA	NA	NA	8	8	Orphan	cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	NA,NA|61aa|down_1|NZ_CP022206.1_1037407_1037590_-,NA|49aa|down_3|NZ_CP022206.1_1038151_1038298_+,NA|84aa|down_4|NZ_CP022206.1_1038438_1038690_+,NA|80aa|down_5|NZ_CP022206.1_1038953_1039193_+,NA|119aa|down_6|NZ_CP022206.1_1039250_1039607_+,NA|91aa|down_9|NZ_CP022206.1_1041274_1041547_-	NA|466aa|up_9|NZ_CP022206.1_1023129_1024527_-	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like	NA|349aa|up_8|NZ_CP022206.1_1024641_1025688_-	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily	NA|263aa|up_7|NZ_CP022206.1_1025681_1026470_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|550aa|up_6|NZ_CP022206.1_1026473_1028123_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|276aa|up_5|NZ_CP022206.1_1028258_1029086_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_4|NZ_CP022206.1_1029082_1029892_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_3|NZ_CP022206.1_1029908_1030400_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_2|NZ_CP022206.1_1030418_1030844_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_1|NZ_CP022206.1_1031050_1032070_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_0|NZ_CP022206.1_1032199_1032637_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|611aa|down_0|NZ_CP022206.1_1034689_1036522_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|61aa|down_1|NZ_CP022206.1_1037407_1037590_-	NA	NA|70aa|down_2|NZ_CP022206.1_1037788_1037998_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|49aa|down_3|NZ_CP022206.1_1038151_1038298_+	NA	NA|84aa|down_4|NZ_CP022206.1_1038438_1038690_+	NA	NA|80aa|down_5|NZ_CP022206.1_1038953_1039193_+	NA	NA|119aa|down_6|NZ_CP022206.1_1039250_1039607_+	NA	NA|402aa|down_7|NZ_CP022206.1_1039722_1040928_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|76aa|down_8|NZ_CP022206.1_1041050_1041278_-	COG5546, COG5546, Small integral membrane protein [Function unknown]	NA|91aa|down_9|NZ_CP022206.1_1041274_1041547_-	NA
GCF_002236855.1_ASM223685v1	NZ_CP022206	Streptococcus pyogenes strain GURSA1 chromosome, complete genome	3	1037173-1037335	2	CRISPRCasFinder	no		cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	Orphan	GACCATTCAAAATAGCATAGCTCTAAAACAT	31	0	0	NA	NA	II-A,II-B	2	2	Orphan	cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	NA,NA|61aa|down_0|NZ_CP022206.1_1037407_1037590_-,NA|49aa|down_2|NZ_CP022206.1_1038151_1038298_+,NA|84aa|down_3|NZ_CP022206.1_1038438_1038690_+,NA|80aa|down_4|NZ_CP022206.1_1038953_1039193_+,NA|119aa|down_5|NZ_CP022206.1_1039250_1039607_+,NA|91aa|down_8|NZ_CP022206.1_1041274_1041547_-,NA|213aa|down_9|NZ_CP022206.1_1041558_1042197_-	NA|263aa|up_9|NZ_CP022206.1_1025681_1026470_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|550aa|up_8|NZ_CP022206.1_1026473_1028123_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|276aa|up_7|NZ_CP022206.1_1028258_1029086_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|270aa|up_6|NZ_CP022206.1_1029082_1029892_-	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|164aa|up_5|NZ_CP022206.1_1029908_1030400_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_4|NZ_CP022206.1_1030418_1030844_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_3|NZ_CP022206.1_1031050_1032070_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|146aa|up_2|NZ_CP022206.1_1032199_1032637_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|561aa|up_1|NZ_CP022206.1_1032822_1034505_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|611aa|up_0|NZ_CP022206.1_1034689_1036522_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|61aa|down_0|NZ_CP022206.1_1037407_1037590_-	NA	NA|70aa|down_1|NZ_CP022206.1_1037788_1037998_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|49aa|down_2|NZ_CP022206.1_1038151_1038298_+	NA	NA|84aa|down_3|NZ_CP022206.1_1038438_1038690_+	NA	NA|80aa|down_4|NZ_CP022206.1_1038953_1039193_+	NA	NA|119aa|down_5|NZ_CP022206.1_1039250_1039607_+	NA	NA|402aa|down_6|NZ_CP022206.1_1039722_1040928_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|76aa|down_7|NZ_CP022206.1_1041050_1041278_-	COG5546, COG5546, Small integral membrane protein [Function unknown]	NA|91aa|down_8|NZ_CP022206.1_1041274_1041547_-	NA	NA|213aa|down_9|NZ_CP022206.1_1041558_1042197_-	NA
GCF_002236855.1_ASM223685v1	NZ_CP022206	Streptococcus pyogenes strain GURSA1 chromosome, complete genome	4	1075733-1075834	3	CRISPRCasFinder	no	csn2,cas2,cas1,cas9	cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	Type II-B,Type II-C,Type II-A	GTTTTGGGACCATTCAAAACAGCATAGCTCTAAAAC	36	0	0	NA	NA	II-A	1	1	TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,csn2,cas2,cas1,cas9,csm6,DinG,csa3	NA|63aa|up_9|NZ_CP022206.1_1069613_1069802_-,NA|86aa|up_8|NZ_CP022206.1_1069956_1070214_-,NA|69aa|up_7|NZ_CP022206.1_1070470_1070677_+,NA|71aa|up_6|NZ_CP022206.1_1070673_1070886_-,NA|76aa|up_4|NZ_CP022206.1_1071722_1071950_-,NA|194aa|up_3|NZ_CP022206.1_1072188_1072770_-,NA|49aa|up_2|NZ_CP022206.1_1072944_1073091_-,NA|214aa|down_8|NZ_CP022206.1_1085728_1086370_-	NA|63aa|up_9|NZ_CP022206.1_1069613_1069802_-	NA	NA|86aa|up_8|NZ_CP022206.1_1069956_1070214_-	NA	NA|69aa|up_7|NZ_CP022206.1_1070470_1070677_+	NA	NA|71aa|up_6|NZ_CP022206.1_1070673_1070886_-	NA	NA|240aa|up_5|NZ_CP022206.1_1070960_1071680_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|76aa|up_4|NZ_CP022206.1_1071722_1071950_-	NA	NA|194aa|up_3|NZ_CP022206.1_1072188_1072770_-	NA	NA|49aa|up_2|NZ_CP022206.1_1072944_1073091_-	NA	NA|252aa|up_1|NZ_CP022206.1_1073249_1074005_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|399aa|up_0|NZ_CP022206.1_1074400_1075597_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	csn2|221aa|down_0|NZ_CP022206.1_1075936_1076599_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP022206.1_1076588_1076930_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP022206.1_1076926_1077796_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1368aa|down_3|NZ_CP022206.1_1077795_1081899_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|211aa|down_4|NZ_CP022206.1_1082377_1083010_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|NZ_CP022206.1_1083009_1083774_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|NZ_CP022206.1_1083773_1084526_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|NZ_CP022206.1_1084535_1085666_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|NZ_CP022206.1_1085728_1086370_-	NA	NA|452aa|down_9|NZ_CP022206.1_1086493_1087849_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
