assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002234735.1_ASM223473v1	NZ_CP022491	Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 chromosome, complete genome	1	1239373-1239473	1	CRISPRCasFinder	no		DEDDh,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,cas14j,c2c9_V-U4	NA,NA|177aa|down_1|NZ_CP022491.1_1240991_1241522_-	NA|355aa|up_9|NZ_CP022491.1_1224301_1225366_+	pfam09234, DUF1963, Domain of unknown function (DUF1963)	NA|448aa|up_8|NZ_CP022491.1_1225451_1226795_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|155aa|up_7|NZ_CP022491.1_1227410_1227875_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_6|NZ_CP022491.1_1227902_1229405_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_5|NZ_CP022491.1_1229429_1232108_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_4|NZ_CP022491.1_1232328_1232730_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_3|NZ_CP022491.1_1232729_1233674_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_2|NZ_CP022491.1_1233824_1234094_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_1|NZ_CP022491.1_1234335_1236471_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_0|NZ_CP022491.1_1236580_1237465_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|415aa|down_0|NZ_CP022491.1_1239686_1240931_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP022491.1_1240991_1241522_-	NA	NA|240aa|down_2|NZ_CP022491.1_1241680_1242400_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP022491.1_1242377_1243385_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP022491.1_1243562_1244459_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP022491.1_1244449_1245445_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP022491.1_1245661_1246186_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP022491.1_1246179_1246683_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP022491.1_1246669_1246987_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP022491.1_1247024_1247468_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_002234735.1_ASM223473v1	NZ_CP022491	Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 chromosome, complete genome	2	1588325-1589695	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,22,22	22	TypeI-E	DEDDh,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,cas14j,c2c9_V-U4	NA,NA|57aa|down_2|NZ_CP022491.1_1590968_1591139_+,NA|81aa|down_6|NZ_CP022491.1_1595673_1595916_-	NA|381aa|up_9|NZ_CP022491.1_1574123_1575266_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP022491.1_1575309_1578066_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP022491.1_1578123_1579419_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP022491.1_1579470_1581705_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP022491.1_1581788_1582145_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP022491.1_1582110_1582407_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP022491.1_1583174_1583975_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP022491.1_1584202_1585840_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP022491.1_1585922_1587221_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP022491.1_1587356_1588028_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP022491.1_1589792_1590590_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP022491.1_1590677_1591040_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|NZ_CP022491.1_1590968_1591139_+	NA	NA|600aa|down_3|NZ_CP022491.1_1591463_1593263_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|NZ_CP022491.1_1593262_1594975_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|NZ_CP022491.1_1595050_1595785_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|81aa|down_6|NZ_CP022491.1_1595673_1595916_-	NA	NA|318aa|down_7|NZ_CP022491.1_1595997_1596951_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_8|NZ_CP022491.1_1597394_1600058_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|down_9|NZ_CP022491.1_1600069_1601629_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCF_002234735.1_ASM223473v1	NZ_CP022491	Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 chromosome, complete genome	3	1605954-1606776	3,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	13,13	13	TypeI-E	DEDDh,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,cas14j,c2c9_V-U4	NA|81aa|up_9|NZ_CP022491.1_1595673_1595916_-,NA	NA|81aa|up_9|NZ_CP022491.1_1595673_1595916_-	NA	NA|318aa|up_8|NZ_CP022491.1_1595997_1596951_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP022491.1_1597394_1600058_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_6|NZ_CP022491.1_1600069_1601629_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP022491.1_1601625_1602186_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP022491.1_1602199_1603258_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP022491.1_1603268_1604015_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP022491.1_1603996_1604647_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP022491.1_1604643_1605564_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP022491.1_1605563_1605857_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP022491.1_1606790_1607837_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP022491.1_1608087_1608996_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP022491.1_1609005_1610445_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP022491.1_1610431_1611037_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP022491.1_1611054_1611411_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP022491.1_1611601_1611913_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP022491.1_1611931_1612642_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP022491.1_1612641_1613121_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP022491.1_1613117_1614167_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP022491.1_1614147_1614909_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002234735.1_ASM223473v1	NZ_CP022491	Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 chromosome, complete genome	4	3719228-3719332	4	CRISPRCasFinder	no		DEDDh,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	TTATCGGATGGTTTATCGCGTGGTTCATCGGGTGAA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,cas14j,c2c9_V-U4	NA|134aa|up_4|NZ_CP022491.1_3715402_3715804_-,NA|87aa|down_0|NZ_CP022491.1_3719744_3720005_-,NA|101aa|down_6|NZ_CP022491.1_3723426_3723729_+	NA|63aa|up_9|NZ_CP022491.1_3713684_3713873_-	pfam06322, Phage_NinH, Phage NinH protein	NA|121aa|up_8|NZ_CP022491.1_3713869_3714232_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_7|NZ_CP022491.1_3714228_3714519_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|241aa|up_6|NZ_CP022491.1_3714518_3715241_-	COG3645, COG3645, Uncharacterized phage-encoded protein [Function unknown]	NA|70aa|up_5|NZ_CP022491.1_3715233_3715443_-	pfam05810, NinF, NinF protein	NA|134aa|up_4|NZ_CP022491.1_3715402_3715804_-	NA	NA|59aa|up_3|NZ_CP022491.1_3715806_3715983_-	pfam05322, NinE, NINE Protein	NA|278aa|up_2|NZ_CP022491.1_3715991_3716825_-	cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	NA|149aa|up_1|NZ_CP022491.1_3716821_3717268_-	pfam05772, NinB, NinB protein	NA|459aa|up_0|NZ_CP022491.1_3717448_3718825_-	TIGR00665, DnaB, replicative DNA helicase	NA|87aa|down_0|NZ_CP022491.1_3719744_3720005_-	NA	NA|94aa|down_1|NZ_CP022491.1_3720041_3720323_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|72aa|down_2|NZ_CP022491.1_3720433_3720649_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_3|NZ_CP022491.1_3720759_3721449_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|360aa|down_4|NZ_CP022491.1_3721612_3722692_+	pfam10546, P63C, P63C domain	NA|70aa|down_5|NZ_CP022491.1_3722838_3723048_-	PRK10292, PRK10292, fumarate hydratase FumD	NA|101aa|down_6|NZ_CP022491.1_3723426_3723729_+	NA	NA|193aa|down_7|NZ_CP022491.1_3723749_3724328_-	pfam14163, SieB, Super-infection exclusion protein B	NA|190aa|down_8|NZ_CP022491.1_3724520_3725090_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|58aa|down_9|NZ_CP022491.1_3725406_3725580_+	pfam02061, Lambda_CIII, Lambda Phage CIII
