assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	1	444888-445057	1	CRISPRCasFinder	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	TGCCGGGCGGGGTGGTGCCGCGCTGCGGCGTGGCGTTGGCGGACGGG	47	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|309aa|up_8|NZ_CP022521.1_437433_438360_-,NA|250aa|up_5|NZ_CP022521.1_440684_441434_-,NA|268aa|down_7|NZ_CP022521.1_452975_453779_-,NA|184aa|down_8|NZ_CP022521.1_453778_454330_-,NA|377aa|down_9|NZ_CP022521.1_454326_455457_-	NA|348aa|up_9|NZ_CP022521.1_436073_437117_+	COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]	NA|309aa|up_8|NZ_CP022521.1_437433_438360_-	NA	NA|437aa|up_7|NZ_CP022521.1_438678_439989_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|223aa|up_6|NZ_CP022521.1_439976_440645_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|250aa|up_5|NZ_CP022521.1_440684_441434_-	NA	NA|122aa|up_4|NZ_CP022521.1_441521_441887_-	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|129aa|up_3|NZ_CP022521.1_441883_442270_-	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|119aa|up_2|NZ_CP022521.1_442476_442833_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|248aa|up_1|NZ_CP022521.1_442869_443613_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|96aa|up_0|NZ_CP022521.1_443794_444082_+	pfam10724, DUF2516, Protein of unknown function (DUF2516)	NA|184aa|down_0|NZ_CP022521.1_445724_446276_-	PRK14086, dnaA, chromosomal replication initiator protein DnaA	NA|282aa|down_1|NZ_CP022521.1_448013_448859_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|64aa|down_2|NZ_CP022521.1_448855_449047_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|367aa|down_3|NZ_CP022521.1_449292_450393_-	cd03786, GTB_UDP-GlcNAc_2-Epimerase, UDP-N-acetylglucosamine 2-epimerase and similar proteins	NA|217aa|down_4|NZ_CP022521.1_450410_451061_-	cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|259aa|down_5|NZ_CP022521.1_451069_451846_-	cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose	NA|379aa|down_6|NZ_CP022521.1_451842_452979_-	cd01918, HprK_C, HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria	NA|268aa|down_7|NZ_CP022521.1_452975_453779_-	NA	NA|184aa|down_8|NZ_CP022521.1_453778_454330_-	NA	NA|377aa|down_9|NZ_CP022521.1_454326_455457_-	NA
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	2	809660-810480	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	ATCGG------CCCCGCACGCGCGGGGATGGCTC,ATCGGCCCCGCACGCGCGGGGATGGCTC,ATCGGCCCCGCACGCGCGGGGATGGCTC	34,28,28	0	0	NA	NA	NA:NA:NA	12,13,13	13	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|69aa|up_3|NZ_CP022521.1_808041_808248_+,NA|129aa|up_2|NZ_CP022521.1_808244_808631_+,NA|66aa|up_1|NZ_CP022521.1_808657_808855_+,NA|161aa|up_0|NZ_CP022521.1_808955_809438_+,NA|190aa|down_4|NZ_CP022521.1_815950_816520_+	NA|304aa|up_9|NZ_CP022521.1_801699_802611_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|346aa|up_8|NZ_CP022521.1_802734_803772_+	cd08998, GH43_Arb43a-like, Glycosyl hydrolase family 43 protein such as Bacillus subtilis subsp	NA|510aa|up_7|NZ_CP022521.1_803925_805455_+	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|385aa|up_6|NZ_CP022521.1_805547_806702_+	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily	NA|64aa|up_5|NZ_CP022521.1_806831_807023_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|259aa|up_4|NZ_CP022521.1_807025_807802_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|69aa|up_3|NZ_CP022521.1_808041_808248_+	NA	NA|129aa|up_2|NZ_CP022521.1_808244_808631_+	NA	NA|66aa|up_1|NZ_CP022521.1_808657_808855_+	NA	NA|161aa|up_0|NZ_CP022521.1_808955_809438_+	NA	NA|290aa|down_0|NZ_CP022521.1_810967_811837_-	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region	NA|87aa|down_1|NZ_CP022521.1_812156_812417_-	COG2719, SpoVR, Uncharacterized conserved protein [Function unknown]	NA|401aa|down_2|NZ_CP022521.1_812597_813800_+	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|290aa|down_3|NZ_CP022521.1_814442_815312_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|190aa|down_4|NZ_CP022521.1_815950_816520_+	NA	NA|400aa|down_5|NZ_CP022521.1_817182_818382_-	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase	NA|167aa|down_6|NZ_CP022521.1_818541_819042_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|165aa|down_7|NZ_CP022521.1_819386_819881_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|146aa|down_8|NZ_CP022521.1_820053_820491_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|294aa|down_9|NZ_CP022521.1_820676_821558_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	3	1133160-1133260	3	CRISPRCasFinder	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GTCTCGATTCCGGAGGACTTCGACGGCTCCAC	32	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|241aa|up_8|NZ_CP022521.1_1122783_1123506_-,NA|108aa|up_0|NZ_CP022521.1_1131504_1131828_+,NA|195aa|down_6|NZ_CP022521.1_1141048_1141633_+,NA|57aa|down_8|NZ_CP022521.1_1143636_1143807_-	NA|989aa|up_9|NZ_CP022521.1_1119595_1122562_+	cd04083, CBM35_Lmo2446-like, Carbohydrate Binding Module 35 (CBM35) domains similar to Lmo2446	NA|241aa|up_8|NZ_CP022521.1_1122783_1123506_-	NA	NA|297aa|up_7|NZ_CP022521.1_1123551_1124442_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|403aa|up_6|NZ_CP022521.1_1124831_1126040_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|201aa|up_5|NZ_CP022521.1_1126036_1126639_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|520aa|up_4|NZ_CP022521.1_1127003_1128563_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|255aa|up_3|NZ_CP022521.1_1128798_1129563_+	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|247aa|up_2|NZ_CP022521.1_1129675_1130416_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|184aa|up_1|NZ_CP022521.1_1130953_1131505_+	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|108aa|up_0|NZ_CP022521.1_1131504_1131828_+	NA	NA|438aa|down_0|NZ_CP022521.1_1133688_1135002_-	cd00610, OAT_like, Acetyl ornithine aminotransferase family	NA|304aa|down_1|NZ_CP022521.1_1135111_1136023_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|222aa|down_2|NZ_CP022521.1_1136267_1136933_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|418aa|down_3|NZ_CP022521.1_1136899_1138153_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|257aa|down_4|NZ_CP022521.1_1138718_1139489_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|196aa|down_5|NZ_CP022521.1_1139600_1140188_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|195aa|down_6|NZ_CP022521.1_1141048_1141633_+	NA	NA|581aa|down_7|NZ_CP022521.1_1141679_1143422_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|57aa|down_8|NZ_CP022521.1_1143636_1143807_-	NA	NA|386aa|down_9|NZ_CP022521.1_1145716_1146874_+	COG0583, LysR, Transcriptional regulator [Transcription]
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	4	1621846-1622001	4	CRISPRCasFinder	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GTGATCCCCGCGCAAGCGGGGGTGAGCCGCAGCC	34	0	0	NA	NA	I-E	2	2	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|47aa|up_6|NZ_CP022521.1_1616090_1616231_+,NA|181aa|up_2|NZ_CP022521.1_1619136_1619679_+,NA|264aa|down_2|NZ_CP022521.1_1624432_1625224_-,NA|147aa|down_6|NZ_CP022521.1_1628040_1628481_-,NA|161aa|down_8|NZ_CP022521.1_1631071_1631554_+	NA|405aa|up_9|NZ_CP022521.1_1611663_1612878_+	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional	NA|306aa|up_8|NZ_CP022521.1_1613774_1614692_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|289aa|up_7|NZ_CP022521.1_1615137_1616004_+	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain	NA|47aa|up_6|NZ_CP022521.1_1616090_1616231_+	NA	NA|608aa|up_5|NZ_CP022521.1_1616596_1618420_+	cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine Synthase B	NA|86aa|up_4|NZ_CP022521.1_1618416_1618674_+	pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD)	NA|138aa|up_3|NZ_CP022521.1_1618670_1619084_+	pfam13471, Transglut_core3, Transglutaminase-like superfamily	NA|181aa|up_2|NZ_CP022521.1_1619136_1619679_+	NA	NA|312aa|up_1|NZ_CP022521.1_1619693_1620629_+	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|296aa|up_0|NZ_CP022521.1_1620651_1621539_+	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|339aa|down_0|NZ_CP022521.1_1622048_1623065_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|254aa|down_1|NZ_CP022521.1_1623621_1624383_+	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain	NA|264aa|down_2|NZ_CP022521.1_1624432_1625224_-	NA	NA|156aa|down_3|NZ_CP022521.1_1625546_1626014_+	cd07817, SRPBCC_8, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|287aa|down_4|NZ_CP022521.1_1626413_1627274_+	PRK06701, PRK06701, short chain dehydrogenase; Provisional	NA|202aa|down_5|NZ_CP022521.1_1627438_1628044_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|147aa|down_6|NZ_CP022521.1_1628040_1628481_-	NA	NA|549aa|down_7|NZ_CP022521.1_1629073_1630720_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|161aa|down_8|NZ_CP022521.1_1631071_1631554_+	NA	NA|70aa|down_9|NZ_CP022521.1_1632506_1632716_-	pfam01361, Tautomerase, Tautomerase enzyme
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	5	2107076-2107283	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GTCCGCCCCGCGCAGCGGGGGTGAGCCG,GTCCGCCCCGCGCNAGCGGGGGTGAGCCG,GGCGTCCGCCCCGCGC-AGCGGGGGTGAGCCG	28,29,32	0	0	NA	NA	NA:NA:NA	2,3,2	3	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|176aa|up_9|NZ_CP022521.1_2099718_2100246_+,NA|172aa|up_8|NZ_CP022521.1_2100242_2100758_+,NA|52aa|up_4|NZ_CP022521.1_2103870_2104026_+,NA|70aa|up_1|NZ_CP022521.1_2105710_2105920_+,NA|133aa|down_4|NZ_CP022521.1_2111651_2112050_+,NA|200aa|down_6|NZ_CP022521.1_2112558_2113158_-,NA|155aa|down_7|NZ_CP022521.1_2113819_2114284_-	NA|176aa|up_9|NZ_CP022521.1_2099718_2100246_+	NA	NA|172aa|up_8|NZ_CP022521.1_2100242_2100758_+	NA	NA|396aa|up_7|NZ_CP022521.1_2100824_2102012_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|303aa|up_6|NZ_CP022521.1_2102099_2103008_-	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family	NA|200aa|up_5|NZ_CP022521.1_2103195_2103795_+	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB	NA|52aa|up_4|NZ_CP022521.1_2103870_2104026_+	NA	NA|154aa|up_3|NZ_CP022521.1_2104300_2104762_-	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator	NA|211aa|up_2|NZ_CP022521.1_2105081_2105714_+	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|70aa|up_1|NZ_CP022521.1_2105710_2105920_+	NA	NA|160aa|up_0|NZ_CP022521.1_2106231_2106711_-	pfam14430, Imm1, Immunity protein Imm1	NA|244aa|down_0|NZ_CP022521.1_2107320_2108052_+	PRK14024, PRK14024, phosphoribosyl isomerase A; Provisional	NA|251aa|down_1|NZ_CP022521.1_2108740_2109493_-	pfam02517, Abi, CAAX protease self-immunity	NA|453aa|down_2|NZ_CP022521.1_2109512_2110871_+	pfam01757, Acyl_transf_3, Acyltransferase family	NA|258aa|down_3|NZ_CP022521.1_2110881_2111655_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|133aa|down_4|NZ_CP022521.1_2111651_2112050_+	NA	NA|119aa|down_5|NZ_CP022521.1_2112046_2112403_+	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed	NA|200aa|down_6|NZ_CP022521.1_2112558_2113158_-	NA	NA|155aa|down_7|NZ_CP022521.1_2113819_2114284_-	NA	NA|63aa|down_8|NZ_CP022521.1_2114493_2114682_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|292aa|down_9|NZ_CP022521.1_2114668_2115544_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	6	2127605-2128306	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GTAAGCCCCGCGCAAGCGGGGGTGAGCC,GTAAGCCCCGCGCAAGCGGGGGTGAGCC,GTAAGCCCCGCGCAAGCGGGGGTGAGCCG	28,28,29	0	0	NA	NA	NA:NA:NA	10,11,11	11	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|81aa|up_9|NZ_CP022521.1_2116917_2117160_+,NA|150aa|up_8|NZ_CP022521.1_2118089_2118539_+,NA|185aa|down_3|NZ_CP022521.1_2131867_2132422_+,NA|117aa|down_4|NZ_CP022521.1_2132418_2132769_+,NA|114aa|down_5|NZ_CP022521.1_2132933_2133275_+	NA|81aa|up_9|NZ_CP022521.1_2116917_2117160_+	NA	NA|150aa|up_8|NZ_CP022521.1_2118089_2118539_+	NA	NA|205aa|up_7|NZ_CP022521.1_2118548_2119163_-	pfam17920, TetR_C_16, Tetracyclin repressor-like, C-terminal domain	NA|540aa|up_6|NZ_CP022521.1_2119246_2120866_+	PRK13571, PRK13571, anthranilate synthase component I; Provisional	NA|235aa|up_5|NZ_CP022521.1_2121311_2122016_+	pfam09534, Trp_oprn_chp, Tryptophan-associated transmembrane protein (Trp_oprn_chp)	NA|271aa|up_4|NZ_CP022521.1_2122191_2123004_+	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|428aa|up_3|NZ_CP022521.1_2123000_2124284_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|272aa|up_2|NZ_CP022521.1_2124283_2125099_+	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|186aa|up_1|NZ_CP022521.1_2125236_2125794_+	pfam05685, Uma2, Putative restriction endonuclease	NA|385aa|up_0|NZ_CP022521.1_2125871_2127026_+	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed	NA|242aa|down_0|NZ_CP022521.1_2128614_2129340_+	PRK00023, cmk, (d)CMP kinase	NA|241aa|down_1|NZ_CP022521.1_2129336_2130059_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|473aa|down_2|NZ_CP022521.1_2130055_2131474_+	PRK03003, PRK03003, GTP-binding protein Der; Reviewed	NA|185aa|down_3|NZ_CP022521.1_2131867_2132422_+	NA	NA|117aa|down_4|NZ_CP022521.1_2132418_2132769_+	NA	NA|114aa|down_5|NZ_CP022521.1_2132933_2133275_+	NA	NA|1218aa|down_6|NZ_CP022521.1_2133434_2137088_-	pfam09992, NAGPA, Phosphodiester glycosidase	NA|319aa|down_7|NZ_CP022521.1_2138347_2139304_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|533aa|down_8|NZ_CP022521.1_2139303_2140902_-	PRK03893, PRK03893, putative sialic acid transporter; Provisional	NA|230aa|down_9|NZ_CP022521.1_2141000_2141690_+	COG2186, FadR, Transcriptional regulators [Transcription]
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	7	2142061-2142394	4,7,4	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GTGCTCTCCACACGCGTGGAGGTTGGTCG,GTGCTCTCCACACGCGTGGAGGTTGGTCG,GTGCTCTCCACACGCGTGGAGGTTGGTCG	29,29,29	0	0	NA	NA	NA:NA:NA	4,4,5	5	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|185aa|up_6|NZ_CP022521.1_2131867_2132422_+,NA|117aa|up_5|NZ_CP022521.1_2132418_2132769_+,NA|114aa|up_4|NZ_CP022521.1_2132933_2133275_+,NA	NA|242aa|up_9|NZ_CP022521.1_2128614_2129340_+	PRK00023, cmk, (d)CMP kinase	NA|241aa|up_8|NZ_CP022521.1_2129336_2130059_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|473aa|up_7|NZ_CP022521.1_2130055_2131474_+	PRK03003, PRK03003, GTP-binding protein Der; Reviewed	NA|185aa|up_6|NZ_CP022521.1_2131867_2132422_+	NA	NA|117aa|up_5|NZ_CP022521.1_2132418_2132769_+	NA	NA|114aa|up_4|NZ_CP022521.1_2132933_2133275_+	NA	NA|1218aa|up_3|NZ_CP022521.1_2133434_2137088_-	pfam09992, NAGPA, Phosphodiester glycosidase	NA|319aa|up_2|NZ_CP022521.1_2138347_2139304_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|533aa|up_1|NZ_CP022521.1_2139303_2140902_-	PRK03893, PRK03893, putative sialic acid transporter; Provisional	NA|230aa|up_0|NZ_CP022521.1_2141000_2141690_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|187aa|down_0|NZ_CP022521.1_2142510_2143071_-	PRK14781, PRK14781, lipoprotein signal peptidase; Provisional	NA|229aa|down_1|NZ_CP022521.1_2143114_2143801_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|180aa|down_2|NZ_CP022521.1_2143906_2144446_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|203aa|down_3|NZ_CP022521.1_2144541_2145150_+	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|279aa|down_4|NZ_CP022521.1_2145423_2146260_+	pfam11599, AviRa, RRNA methyltransferase AviRa	NA|389aa|down_5|NZ_CP022521.1_2147091_2148258_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|523aa|down_6|NZ_CP022521.1_2148250_2149819_+	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|332aa|down_7|NZ_CP022521.1_2149815_2150811_+	cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphate Synthases, head-to-head	NA|409aa|down_8|NZ_CP022521.1_2151330_2152557_+	pfam06259, Abhydrolase_8, Alpha/beta hydrolase	NA|572aa|down_9|NZ_CP022521.1_2152562_2154278_+	pfam01757, Acyl_transf_3, Acyltransferase family
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	8	2158044-2158681	8,5,5	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GGCTCACCCCCGCTCGCGCGGGGAAGAC,GGCTCACCCCCGCTCGCGCGGGGAAGAC,GGCTCACCCCCGCTCGCGCGGGGAAGAC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	10,10,7	10	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA,NA|112aa|down_0|NZ_CP022521.1_2158914_2159250_-,NA|144aa|down_1|NZ_CP022521.1_2159242_2159674_-,NA|274aa|down_9|NZ_CP022521.1_2168100_2168922_-	NA|203aa|up_9|NZ_CP022521.1_2144541_2145150_+	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|279aa|up_8|NZ_CP022521.1_2145423_2146260_+	pfam11599, AviRa, RRNA methyltransferase AviRa	NA|389aa|up_7|NZ_CP022521.1_2147091_2148258_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|523aa|up_6|NZ_CP022521.1_2148250_2149819_+	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|332aa|up_5|NZ_CP022521.1_2149815_2150811_+	cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphate Synthases, head-to-head	NA|409aa|up_4|NZ_CP022521.1_2151330_2152557_+	pfam06259, Abhydrolase_8, Alpha/beta hydrolase	NA|572aa|up_3|NZ_CP022521.1_2152562_2154278_+	pfam01757, Acyl_transf_3, Acyltransferase family	NA|433aa|up_2|NZ_CP022521.1_2154415_2155714_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|288aa|up_1|NZ_CP022521.1_2155710_2156574_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_0|NZ_CP022521.1_2156844_2157684_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|112aa|down_0|NZ_CP022521.1_2158914_2159250_-	NA	NA|144aa|down_1|NZ_CP022521.1_2159242_2159674_-	NA	NA|224aa|down_2|NZ_CP022521.1_2159993_2160665_+	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|254aa|down_3|NZ_CP022521.1_2160689_2161451_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|312aa|down_4|NZ_CP022521.1_2161533_2162469_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|354aa|down_5|NZ_CP022521.1_2162965_2164027_+	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	NA|143aa|down_6|NZ_CP022521.1_2164444_2164873_+	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|459aa|down_7|NZ_CP022521.1_2165184_2166561_+	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]	NA|221aa|down_8|NZ_CP022521.1_2167161_2167824_-	PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional	NA|274aa|down_9|NZ_CP022521.1_2168100_2168922_-	NA
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	9	2166720-2167116	6,6,9	PILER-CR,CRT,CRISPRCasFinder	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GTGCGCCCCGCGCAAGCGGGGGTGAGCC,GTGCGCCCCGCGCAAGCGGGGGTGAGCC,GCCCCGCGCAAGCGGGGGTGAGCC	28,28,24	0	0	NA	NA	NA:NA:NA	4,6,5	6	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|112aa|up_7|NZ_CP022521.1_2158914_2159250_-,NA|144aa|up_6|NZ_CP022521.1_2159242_2159674_-,NA|274aa|down_1|NZ_CP022521.1_2168100_2168922_-,NA|108aa|down_3|NZ_CP022521.1_2173667_2173991_-	NA|288aa|up_9|NZ_CP022521.1_2155710_2156574_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_8|NZ_CP022521.1_2156844_2157684_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|112aa|up_7|NZ_CP022521.1_2158914_2159250_-	NA	NA|144aa|up_6|NZ_CP022521.1_2159242_2159674_-	NA	NA|224aa|up_5|NZ_CP022521.1_2159993_2160665_+	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others	NA|254aa|up_4|NZ_CP022521.1_2160689_2161451_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|312aa|up_3|NZ_CP022521.1_2161533_2162469_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|354aa|up_2|NZ_CP022521.1_2162965_2164027_+	COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	NA|143aa|up_1|NZ_CP022521.1_2164444_2164873_+	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|459aa|up_0|NZ_CP022521.1_2165184_2166561_+	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]	NA|221aa|down_0|NZ_CP022521.1_2167161_2167824_-	PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional	NA|274aa|down_1|NZ_CP022521.1_2168100_2168922_-	NA	NA|442aa|down_2|NZ_CP022521.1_2169727_2171053_+	pfam01270, Glyco_hydro_8, Glycosyl hydrolases family 8	NA|108aa|down_3|NZ_CP022521.1_2173667_2173991_-	NA	NA|285aa|down_4|NZ_CP022521.1_2174188_2175043_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|934aa|down_5|NZ_CP022521.1_2175793_2178595_-	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)	NA|162aa|down_6|NZ_CP022521.1_2179038_2179524_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|206aa|down_7|NZ_CP022521.1_2179640_2180258_+	pfam01810, LysE, LysE type translocator	NA|393aa|down_8|NZ_CP022521.1_2180645_2181824_-	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|121aa|down_9|NZ_CP022521.1_2181820_2182183_-	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	10	2893681-2893795	10	CRISPRCasFinder	no	csa3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-A	GGTGGCACCGGTTCTCCGGGGCCGGTGAGGATCGCAACCAGGC	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA,NA	NA|349aa|up_9|NZ_CP022521.1_2880930_2881977_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|362aa|up_8|NZ_CP022521.1_2882022_2883108_+	cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like	NA|450aa|up_7|NZ_CP022521.1_2883104_2884454_+	pfam14315, DUF4380, Domain of unknown function (DUF4380)	NA|254aa|up_6|NZ_CP022521.1_2884450_2885212_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|382aa|up_5|NZ_CP022521.1_2886385_2887531_+	PRK14017, PRK14017, galactonate dehydratase; Provisional	NA|226aa|up_4|NZ_CP022521.1_2888082_2888760_+	cd00452, KDPG_aldolase, KDPG and KHG aldolase	NA|315aa|up_3|NZ_CP022521.1_2888756_2889701_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|210aa|up_2|NZ_CP022521.1_2889955_2890585_-	TIGR03968, transcriptional_regulator_TetR_family, mycofactocin system transcriptional regulator	NA|149aa|up_1|NZ_CP022521.1_2890694_2891141_+	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|298aa|up_0|NZ_CP022521.1_2891307_2892201_+	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|479aa|down_0|NZ_CP022521.1_2894373_2895810_+	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase	NA|155aa|down_1|NZ_CP022521.1_2895818_2896283_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|142aa|down_2|NZ_CP022521.1_2896413_2896839_+	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|450aa|down_3|NZ_CP022521.1_2897310_2898660_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|239aa|down_4|NZ_CP022521.1_2898656_2899373_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|282aa|down_5|NZ_CP022521.1_2900048_2900894_-	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|403aa|down_6|NZ_CP022521.1_2901140_2902349_-	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|260aa|down_7|NZ_CP022521.1_2902482_2903262_-	PRK07231, FabG-like, SDR family oxidoreductase	NA|281aa|down_8|NZ_CP022521.1_2903544_2904387_-	cd05233, SDR_c, classical (c) SDRs	NA|345aa|down_9|NZ_CP022521.1_2905322_2906357_-	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	11	3692216-3692792	7,11,7	PILER-CR,CRISPRCasFinder,CRT	no	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	GTGCTCTCCACGCACGTGGAGGTTGGTCG,CGACCAACCTCCACGTGCGTGGAGAGCAC,CGACCAACCTCCACGTGCGTGGAGAGCAC	29,29,29	1	1	3692610-3692641	NZ_CP022521.1_3323108-3323077	NA:NA:NA	9,9,9	9	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA,NA	NA|666aa|up_9|NZ_CP022521.1_3682902_3684900_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|245aa|up_8|NZ_CP022521.1_3685048_3685783_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|138aa|up_7|NZ_CP022521.1_3685871_3686285_-	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|193aa|up_6|NZ_CP022521.1_3686281_3686860_-	cd07826, SRPBCC_CalC_Aha1-like_9, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	csa3|119aa|up_5|NZ_CP022521.1_3686859_3687216_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|190aa|up_4|NZ_CP022521.1_3687298_3687868_-	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|176aa|up_3|NZ_CP022521.1_3688276_3688804_+	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	NA|370aa|up_2|NZ_CP022521.1_3689017_3690127_+	PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional	NA|206aa|up_1|NZ_CP022521.1_3690123_3690741_+	COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|331aa|up_0|NZ_CP022521.1_3690737_3691730_+	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	cas2|102aa|down_0|NZ_CP022521.1_3692810_3693116_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|325aa|down_1|NZ_CP022521.1_3693119_3694094_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|211aa|down_2|NZ_CP022521.1_3694099_3694732_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|250aa|down_3|NZ_CP022521.1_3694733_3695483_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|396aa|down_4|NZ_CP022521.1_3695479_3696667_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|272aa|down_5|NZ_CP022521.1_3696663_3697479_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|down_6|NZ_CP022521.1_3697471_3699070_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|919aa|down_7|NZ_CP022521.1_3700967_3703724_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|287aa|down_8|NZ_CP022521.1_3704774_3705635_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|223aa|down_9|NZ_CP022521.1_3705835_3706504_-	pfam17933, TetR_C_25, Tetracyclin repressor-like, C-terminal domain
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	12	3699127-3699205	12	CRISPRCasFinder	no	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	GTGCTCTCCACGCATGTGGAGGTTGGTCG	29	0	0	NA	NA	NA	1	1	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA,NA|160aa|down_7|NZ_CP022521.1_3710677_3711157_+,NA|60aa|down_8|NZ_CP022521.1_3711308_3711488_-,NA|146aa|down_9|NZ_CP022521.1_3711776_3712214_-	NA|370aa|up_9|NZ_CP022521.1_3689017_3690127_+	PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional	NA|206aa|up_8|NZ_CP022521.1_3690123_3690741_+	COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|331aa|up_7|NZ_CP022521.1_3690737_3691730_+	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	cas2|102aa|up_6|NZ_CP022521.1_3692810_3693116_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|325aa|up_5|NZ_CP022521.1_3693119_3694094_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|211aa|up_4|NZ_CP022521.1_3694099_3694732_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|250aa|up_3|NZ_CP022521.1_3694733_3695483_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|396aa|up_2|NZ_CP022521.1_3695479_3696667_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|272aa|up_1|NZ_CP022521.1_3696663_3697479_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|up_0|NZ_CP022521.1_3697471_3699070_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|919aa|down_0|NZ_CP022521.1_3700967_3703724_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|287aa|down_1|NZ_CP022521.1_3704774_3705635_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|223aa|down_2|NZ_CP022521.1_3705835_3706504_-	pfam17933, TetR_C_25, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_3|NZ_CP022521.1_3706890_3707553_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|228aa|down_4|NZ_CP022521.1_3708214_3708898_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|297aa|down_5|NZ_CP022521.1_3708982_3709873_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|172aa|down_6|NZ_CP022521.1_3710117_3710633_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|160aa|down_7|NZ_CP022521.1_3710677_3711157_+	NA	NA|60aa|down_8|NZ_CP022521.1_3711308_3711488_-	NA	NA|146aa|down_9|NZ_CP022521.1_3711776_3712214_-	NA
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	13	3699574-3699968	8,13,8	PILER-CR,CRISPRCasFinder,CRT	no	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	GTGCTCTCCACGCATGTGGAGGTTGGTCG,GTGCTCTCCACGCATGTGGAGGTTGGTCG,GTGCTCTCCACGCATGTGGAGGTTGGTCG	29,29,29	0	0	NA	NA	NA:NA:NA	3,6,5	6	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA,NA|160aa|down_7|NZ_CP022521.1_3710677_3711157_+,NA|60aa|down_8|NZ_CP022521.1_3711308_3711488_-,NA|146aa|down_9|NZ_CP022521.1_3711776_3712214_-	NA|370aa|up_9|NZ_CP022521.1_3689017_3690127_+	PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional	NA|206aa|up_8|NZ_CP022521.1_3690123_3690741_+	COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|331aa|up_7|NZ_CP022521.1_3690737_3691730_+	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	cas2|102aa|up_6|NZ_CP022521.1_3692810_3693116_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|325aa|up_5|NZ_CP022521.1_3693119_3694094_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|211aa|up_4|NZ_CP022521.1_3694099_3694732_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|250aa|up_3|NZ_CP022521.1_3694733_3695483_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|396aa|up_2|NZ_CP022521.1_3695479_3696667_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|272aa|up_1|NZ_CP022521.1_3696663_3697479_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|up_0|NZ_CP022521.1_3697471_3699070_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|919aa|down_0|NZ_CP022521.1_3700967_3703724_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|287aa|down_1|NZ_CP022521.1_3704774_3705635_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|223aa|down_2|NZ_CP022521.1_3705835_3706504_-	pfam17933, TetR_C_25, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_3|NZ_CP022521.1_3706890_3707553_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|228aa|down_4|NZ_CP022521.1_3708214_3708898_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|297aa|down_5|NZ_CP022521.1_3708982_3709873_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|172aa|down_6|NZ_CP022521.1_3710117_3710633_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|160aa|down_7|NZ_CP022521.1_3710677_3711157_+	NA	NA|60aa|down_8|NZ_CP022521.1_3711308_3711488_-	NA	NA|146aa|down_9|NZ_CP022521.1_3711776_3712214_-	NA
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	14	3700059-3700153	14	CRISPRCasFinder	no	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	GTGCTCTCCACGCATGTGGAGGTTGGTCG	29	0	0	NA	NA	NA	1	1	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA,NA|160aa|down_7|NZ_CP022521.1_3710677_3711157_+,NA|60aa|down_8|NZ_CP022521.1_3711308_3711488_-,NA|146aa|down_9|NZ_CP022521.1_3711776_3712214_-	NA|370aa|up_9|NZ_CP022521.1_3689017_3690127_+	PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional	NA|206aa|up_8|NZ_CP022521.1_3690123_3690741_+	COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|331aa|up_7|NZ_CP022521.1_3690737_3691730_+	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	cas2|102aa|up_6|NZ_CP022521.1_3692810_3693116_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|325aa|up_5|NZ_CP022521.1_3693119_3694094_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|211aa|up_4|NZ_CP022521.1_3694099_3694732_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|250aa|up_3|NZ_CP022521.1_3694733_3695483_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|396aa|up_2|NZ_CP022521.1_3695479_3696667_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|272aa|up_1|NZ_CP022521.1_3696663_3697479_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|up_0|NZ_CP022521.1_3697471_3699070_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|919aa|down_0|NZ_CP022521.1_3700967_3703724_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|287aa|down_1|NZ_CP022521.1_3704774_3705635_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|223aa|down_2|NZ_CP022521.1_3705835_3706504_-	pfam17933, TetR_C_25, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_3|NZ_CP022521.1_3706890_3707553_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|228aa|down_4|NZ_CP022521.1_3708214_3708898_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|297aa|down_5|NZ_CP022521.1_3708982_3709873_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|172aa|down_6|NZ_CP022521.1_3710117_3710633_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|160aa|down_7|NZ_CP022521.1_3710677_3711157_+	NA	NA|60aa|down_8|NZ_CP022521.1_3711308_3711488_-	NA	NA|146aa|down_9|NZ_CP022521.1_3711776_3712214_-	NA
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	15	3703933-3704694	15,9,9	CRISPRCasFinder,CRT,PILER-CR	no	csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	GTGTTCTCCACACGCGTGGAGGTTGGTCG,GTGTTCTCCACACGCGTGGAGGTTGGTCG,GTGTTCTCCACACGCGTGGAGGTTGGTCG	29,29,29	0	0	NA	NA	NA:NA:NA	12,12,9	12	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA,NA|160aa|down_6|NZ_CP022521.1_3710677_3711157_+,NA|60aa|down_7|NZ_CP022521.1_3711308_3711488_-,NA|146aa|down_8|NZ_CP022521.1_3711776_3712214_-,NA|78aa|down_9|NZ_CP022521.1_3712308_3712542_-	NA|206aa|up_9|NZ_CP022521.1_3690123_3690741_+	COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|331aa|up_8|NZ_CP022521.1_3690737_3691730_+	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c	cas2|102aa|up_7|NZ_CP022521.1_3692810_3693116_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|325aa|up_6|NZ_CP022521.1_3693119_3694094_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|211aa|up_5|NZ_CP022521.1_3694099_3694732_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|250aa|up_4|NZ_CP022521.1_3694733_3695483_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|396aa|up_3|NZ_CP022521.1_3695479_3696667_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|272aa|up_2|NZ_CP022521.1_3696663_3697479_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|533aa|up_1|NZ_CP022521.1_3697471_3699070_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|919aa|up_0|NZ_CP022521.1_3700967_3703724_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|287aa|down_0|NZ_CP022521.1_3704774_3705635_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|223aa|down_1|NZ_CP022521.1_3705835_3706504_-	pfam17933, TetR_C_25, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_2|NZ_CP022521.1_3706890_3707553_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|228aa|down_3|NZ_CP022521.1_3708214_3708898_-	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|297aa|down_4|NZ_CP022521.1_3708982_3709873_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|172aa|down_5|NZ_CP022521.1_3710117_3710633_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|160aa|down_6|NZ_CP022521.1_3710677_3711157_+	NA	NA|60aa|down_7|NZ_CP022521.1_3711308_3711488_-	NA	NA|146aa|down_8|NZ_CP022521.1_3711776_3712214_-	NA	NA|78aa|down_9|NZ_CP022521.1_3712308_3712542_-	NA
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	16	3718728-3718923	16,10	CRISPRCasFinder,PILER-CR	no	cas3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Unclear	GTTGCGATCCTCATCGGCCCCGGAGGGCCGATGCCAC,GTTGCGATCCTCATCGACCCCGAAGGGCCGATGCCACCCACTCGT	37,45	0	0	NA	NA	NA:NA	2,2	2	Unclear	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|160aa|up_9|NZ_CP022521.1_3710677_3711157_+,NA|60aa|up_8|NZ_CP022521.1_3711308_3711488_-,NA|146aa|up_7|NZ_CP022521.1_3711776_3712214_-,NA|78aa|up_6|NZ_CP022521.1_3712308_3712542_-,NA|85aa|down_0|NZ_CP022521.1_3719360_3719615_-,NA|127aa|down_1|NZ_CP022521.1_3719618_3719999_-	NA|160aa|up_9|NZ_CP022521.1_3710677_3711157_+	NA	NA|60aa|up_8|NZ_CP022521.1_3711308_3711488_-	NA	NA|146aa|up_7|NZ_CP022521.1_3711776_3712214_-	NA	NA|78aa|up_6|NZ_CP022521.1_3712308_3712542_-	NA	NA|292aa|up_5|NZ_CP022521.1_3712935_3713811_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|63aa|up_4|NZ_CP022521.1_3713797_3713986_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|303aa|up_3|NZ_CP022521.1_3714064_3714973_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|360aa|up_2|NZ_CP022521.1_3714969_3716049_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|581aa|up_1|NZ_CP022521.1_3716216_3717959_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|225aa|up_0|NZ_CP022521.1_3717955_3718630_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|85aa|down_0|NZ_CP022521.1_3719360_3719615_-	NA	NA|127aa|down_1|NZ_CP022521.1_3719618_3719999_-	NA	NA|300aa|down_2|NZ_CP022521.1_3720706_3721606_-	pfam02517, Abi, CAAX protease self-immunity	NA|276aa|down_3|NZ_CP022521.1_3721602_3722430_-	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator	NA|135aa|down_4|NZ_CP022521.1_3722565_3722970_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|688aa|down_5|NZ_CP022521.1_3722999_3725063_-	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127	NA|284aa|down_6|NZ_CP022521.1_3725141_3725993_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|258aa|down_7|NZ_CP022521.1_3725992_3726766_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|430aa|down_8|NZ_CP022521.1_3727079_3728369_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|345aa|down_9|NZ_CP022521.1_3728650_3729685_+	COG1609, PurR, Transcriptional regulators [Transcription]
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	17	3720003-3720439	17,10,11	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Unclear	GTTGCGATCCTCATCGGCCCCGGAGGGCCGATGCCAC,GTTGCGATCCTCATCGGCCCCGNAGGGCCGATGCCAC,GTTGCGATCCTCATCGGCCCCGGAGGGCCGATGCCAC	37,37,37	0	0	NA	NA	NA:NA:NA	5,5,4	5	Unclear	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|146aa|up_9|NZ_CP022521.1_3711776_3712214_-,NA|78aa|up_8|NZ_CP022521.1_3712308_3712542_-,NA|85aa|up_1|NZ_CP022521.1_3719360_3719615_-,NA|127aa|up_0|NZ_CP022521.1_3719618_3719999_-,NA	NA|146aa|up_9|NZ_CP022521.1_3711776_3712214_-	NA	NA|78aa|up_8|NZ_CP022521.1_3712308_3712542_-	NA	NA|292aa|up_7|NZ_CP022521.1_3712935_3713811_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|63aa|up_6|NZ_CP022521.1_3713797_3713986_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|303aa|up_5|NZ_CP022521.1_3714064_3714973_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|360aa|up_4|NZ_CP022521.1_3714969_3716049_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|581aa|up_3|NZ_CP022521.1_3716216_3717959_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|225aa|up_2|NZ_CP022521.1_3717955_3718630_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|85aa|up_1|NZ_CP022521.1_3719360_3719615_-	NA	NA|127aa|up_0|NZ_CP022521.1_3719618_3719999_-	NA	NA|300aa|down_0|NZ_CP022521.1_3720706_3721606_-	pfam02517, Abi, CAAX protease self-immunity	NA|276aa|down_1|NZ_CP022521.1_3721602_3722430_-	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator	NA|135aa|down_2|NZ_CP022521.1_3722565_3722970_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|688aa|down_3|NZ_CP022521.1_3722999_3725063_-	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127	NA|284aa|down_4|NZ_CP022521.1_3725141_3725993_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|258aa|down_5|NZ_CP022521.1_3725992_3726766_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|430aa|down_6|NZ_CP022521.1_3727079_3728369_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|345aa|down_7|NZ_CP022521.1_3728650_3729685_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|229aa|down_8|NZ_CP022521.1_3729629_3730316_-	pfam07532, Big_4, Bacterial Ig-like domain (group 4)	NA|255aa|down_9|NZ_CP022521.1_3730433_3731198_-	pfam10067, DUF2306, Predicted membrane protein (DUF2306)
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	18	3744340-3744513	12	PILER-CR	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GTTGCGATCCTCATCGGCCCCGGAGGGCCGATGCCACCCTGACCG	45	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|116aa|up_8|NZ_CP022521.1_3735226_3735574_-,NA|127aa|up_7|NZ_CP022521.1_3735952_3736333_-,NA|97aa|up_4|NZ_CP022521.1_3740718_3741009_+,NA|75aa|up_3|NZ_CP022521.1_3741385_3741610_+,NA|150aa|up_2|NZ_CP022521.1_3741606_3742056_+,NA|60aa|down_1|NZ_CP022521.1_3747914_3748094_+,NA|265aa|down_3|NZ_CP022521.1_3748864_3749659_-	NA|132aa|up_9|NZ_CP022521.1_3734310_3734706_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|116aa|up_8|NZ_CP022521.1_3735226_3735574_-	NA	NA|127aa|up_7|NZ_CP022521.1_3735952_3736333_-	NA	NA|875aa|up_6|NZ_CP022521.1_3736647_3739272_-	PRK09234, fbiC, FO synthase; Reviewed	NA|235aa|up_5|NZ_CP022521.1_3739830_3740535_+	pfam13305, WHG, WHG domain	NA|97aa|up_4|NZ_CP022521.1_3740718_3741009_+	NA	NA|75aa|up_3|NZ_CP022521.1_3741385_3741610_+	NA	NA|150aa|up_2|NZ_CP022521.1_3741606_3742056_+	NA	NA|401aa|up_1|NZ_CP022521.1_3742226_3743429_-	PRK07588, PRK07588, FAD-binding domain	NA|166aa|up_0|NZ_CP022521.1_3743652_3744150_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|923aa|down_0|NZ_CP022521.1_3744827_3747596_-	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|60aa|down_1|NZ_CP022521.1_3747914_3748094_+	NA	NA|92aa|down_2|NZ_CP022521.1_3748195_3748471_+	COG3462, COG3462, Predicted membrane protein [Function unknown]	NA|265aa|down_3|NZ_CP022521.1_3748864_3749659_-	NA	NA|288aa|down_4|NZ_CP022521.1_3750228_3751092_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|352aa|down_5|NZ_CP022521.1_3751336_3752392_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|585aa|down_6|NZ_CP022521.1_3752388_3754143_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|559aa|down_7|NZ_CP022521.1_3754176_3755853_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|3179aa|down_8|NZ_CP022521.1_3755833_3765370_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|328aa|down_9|NZ_CP022521.1_3765427_3766411_-	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	19	3863699-3864100	11,18,13	CRT,CRISPRCasFinder,PILER-CR	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GCGATCCNCACCGGCNCCGGANAGCCGGTGCCACN,GCGATCCTCACCGGCTCCGGAGAGCCGGTGCCAC,GTGGCACCGGCTCTCCGGAGCCGGTGAGGATCGCAACGCTGC	35,34,42	0	0	NA	NA	NA:NA:NA	5,4,2	5	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|339aa|up_5|NZ_CP022521.1_3854549_3855566_+,NA|196aa|up_0|NZ_CP022521.1_3862860_3863448_-,NA	NA|259aa|up_9|NZ_CP022521.1_3850202_3850979_-	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|445aa|up_8|NZ_CP022521.1_3851855_3853190_+	TIGR04188, conserved_hypothetical_protein, methyltransferase, ATP-grasp peptide maturase system	NA|144aa|up_7|NZ_CP022521.1_3853144_3853576_+	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|165aa|up_6|NZ_CP022521.1_3853874_3854369_+	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|339aa|up_5|NZ_CP022521.1_3854549_3855566_+	NA	NA|307aa|up_4|NZ_CP022521.1_3856115_3857036_-	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|199aa|up_3|NZ_CP022521.1_3857144_3857741_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|194aa|up_2|NZ_CP022521.1_3857987_3858569_-	sd00045, ANK, ankyrin repeats	NA|703aa|up_1|NZ_CP022521.1_3858914_3861023_-	pfam02065, Melibiase, Melibiase	NA|196aa|up_0|NZ_CP022521.1_3862860_3863448_-	NA	NA|545aa|down_0|NZ_CP022521.1_3864438_3866073_+	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|345aa|down_1|NZ_CP022521.1_3866152_3867187_-	PRK08241, PRK08241, RNA polymerase subunit sigma-70	NA|395aa|down_2|NZ_CP022521.1_3867626_3868811_-	cd01935, Ntn_CGH_like, Choloylglycine hydrolase (CGH)_like	NA|204aa|down_3|NZ_CP022521.1_3868916_3869528_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|308aa|down_4|NZ_CP022521.1_3869806_3870730_+	cd07377, WHTH_GntR, Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators	NA|547aa|down_5|NZ_CP022521.1_3870991_3872632_-	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	NA|302aa|down_6|NZ_CP022521.1_3872779_3873685_-	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|265aa|down_7|NZ_CP022521.1_3874238_3875033_+	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase	NA|535aa|down_8|NZ_CP022521.1_3875230_3876835_-	TIGR03832, putative_ammonia_lyase/transferase, tyrosine 2,3-aminomutase	NA|1128aa|down_9|NZ_CP022521.1_3876921_3880305_-	PRK12316, PRK12316, peptide synthase; Provisional
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	20	4068726-4069083	19,14	CRISPRCasFinder,PILER-CR	no	csa3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-A	GTTGGAACTCCTCGTAGGAGCGATGAAGAC,GTTGGAACTCCTCGTAGGAGCGATGAAGAC	30,30	0	0	NA	NA	NA:NA	5,4	5	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|74aa|up_9|NZ_CP022521.1_4063022_4063244_-,NA|84aa|up_8|NZ_CP022521.1_4063260_4063512_-,NA|88aa|up_7|NZ_CP022521.1_4063618_4063882_-,NA|66aa|up_6|NZ_CP022521.1_4063961_4064159_-,NA|68aa|up_5|NZ_CP022521.1_4064155_4064359_-,NA|155aa|up_3|NZ_CP022521.1_4065324_4065789_-,NA|124aa|down_1|NZ_CP022521.1_4071414_4071786_-,NA|99aa|down_3|NZ_CP022521.1_4073040_4073337_-	NA|74aa|up_9|NZ_CP022521.1_4063022_4063244_-	NA	NA|84aa|up_8|NZ_CP022521.1_4063260_4063512_-	NA	NA|88aa|up_7|NZ_CP022521.1_4063618_4063882_-	NA	NA|66aa|up_6|NZ_CP022521.1_4063961_4064159_-	NA	NA|68aa|up_5|NZ_CP022521.1_4064155_4064359_-	NA	NA|225aa|up_4|NZ_CP022521.1_4064555_4065230_-	pfam13349, DUF4097, Putative adhesin	NA|155aa|up_3|NZ_CP022521.1_4065324_4065789_-	NA	NA|64aa|up_2|NZ_CP022521.1_4065788_4065980_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|250aa|up_1|NZ_CP022521.1_4066363_4067113_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|175aa|up_0|NZ_CP022521.1_4067105_4067630_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|82aa|down_0|NZ_CP022521.1_4069924_4070170_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|124aa|down_1|NZ_CP022521.1_4071414_4071786_-	NA	NA|393aa|down_2|NZ_CP022521.1_4071862_4073041_-	pfam00110, wnt, wnt family	NA|99aa|down_3|NZ_CP022521.1_4073040_4073337_-	NA	NA|506aa|down_4|NZ_CP022521.1_4073589_4075107_-	pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain	NA|149aa|down_5|NZ_CP022521.1_4076419_4076866_-	cd07254, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	csa3|123aa|down_6|NZ_CP022521.1_4076950_4077319_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|362aa|down_7|NZ_CP022521.1_4077315_4078401_+	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein	NA|137aa|down_8|NZ_CP022521.1_4078678_4079089_+	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|402aa|down_9|NZ_CP022521.1_4079495_4080701_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	21	4070561-4070744	20	CRISPRCasFinder	no	csa3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-A	GCCGCAATGAGGCCCGGCCGTGAAGGCCGGGTGCGACCC	39	1	1	4070673-4070705	NZ_CP022521.1_5374633-5374665	NA	2	2	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|88aa|up_9|NZ_CP022521.1_4063618_4063882_-,NA|66aa|up_8|NZ_CP022521.1_4063961_4064159_-,NA|68aa|up_7|NZ_CP022521.1_4064155_4064359_-,NA|155aa|up_5|NZ_CP022521.1_4065324_4065789_-,NA|124aa|down_0|NZ_CP022521.1_4071414_4071786_-,NA|99aa|down_2|NZ_CP022521.1_4073040_4073337_-	NA|88aa|up_9|NZ_CP022521.1_4063618_4063882_-	NA	NA|66aa|up_8|NZ_CP022521.1_4063961_4064159_-	NA	NA|68aa|up_7|NZ_CP022521.1_4064155_4064359_-	NA	NA|225aa|up_6|NZ_CP022521.1_4064555_4065230_-	pfam13349, DUF4097, Putative adhesin	NA|155aa|up_5|NZ_CP022521.1_4065324_4065789_-	NA	NA|64aa|up_4|NZ_CP022521.1_4065788_4065980_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|250aa|up_3|NZ_CP022521.1_4066363_4067113_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|175aa|up_2|NZ_CP022521.1_4067105_4067630_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|252aa|up_1|NZ_CP022521.1_4069064_4069820_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|82aa|up_0|NZ_CP022521.1_4069924_4070170_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|124aa|down_0|NZ_CP022521.1_4071414_4071786_-	NA	NA|393aa|down_1|NZ_CP022521.1_4071862_4073041_-	pfam00110, wnt, wnt family	NA|99aa|down_2|NZ_CP022521.1_4073040_4073337_-	NA	NA|506aa|down_3|NZ_CP022521.1_4073589_4075107_-	pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain	NA|149aa|down_4|NZ_CP022521.1_4076419_4076866_-	cd07254, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	csa3|123aa|down_5|NZ_CP022521.1_4076950_4077319_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|362aa|down_6|NZ_CP022521.1_4077315_4078401_+	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein	NA|137aa|down_7|NZ_CP022521.1_4078678_4079089_+	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	NA|402aa|down_8|NZ_CP022521.1_4079495_4080701_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|324aa|down_9|NZ_CP022521.1_4080760_4081732_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	22	4279510-4279965	15,21,12	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GAGCCATCCCCGCGTGCGCGGGGCCGAT,GAGCCATCCCCGCGTGCGCGGGGCCGAT,GAGCCATCCCCGCGTGCGCGGGGCCGAT	28,28,28	0	0	NA	NA	NA:NA:NA	7,7,7	7	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|244aa|up_1|NZ_CP022521.1_4275282_4276014_-,NA|94aa|down_0|NZ_CP022521.1_4280378_4280660_-,NA|190aa|down_4|NZ_CP022521.1_4284950_4285520_-,NA|219aa|down_5|NZ_CP022521.1_4285630_4286287_+	NA|238aa|up_9|NZ_CP022521.1_4264438_4265152_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|563aa|up_8|NZ_CP022521.1_4265439_4267128_+	cd08511, PBP2_NikA_DppA_OppA_like_5, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|318aa|up_7|NZ_CP022521.1_4267129_4268083_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|292aa|up_6|NZ_CP022521.1_4268082_4268958_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|601aa|up_5|NZ_CP022521.1_4268968_4270771_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|563aa|up_4|NZ_CP022521.1_4270965_4272654_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|378aa|up_3|NZ_CP022521.1_4273028_4274162_+	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|141aa|up_2|NZ_CP022521.1_4274573_4274996_+	TIGR02246, hypothetical_protein, conserved hypothetical protein	NA|244aa|up_1|NZ_CP022521.1_4275282_4276014_-	NA	NA|790aa|up_0|NZ_CP022521.1_4276438_4278808_-	pfam00656, Peptidase_C14, Caspase domain	NA|94aa|down_0|NZ_CP022521.1_4280378_4280660_-	NA	NA|280aa|down_1|NZ_CP022521.1_4281524_4282364_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|290aa|down_2|NZ_CP022521.1_4282468_4283338_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|517aa|down_3|NZ_CP022521.1_4283403_4284954_-	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|190aa|down_4|NZ_CP022521.1_4284950_4285520_-	NA	NA|219aa|down_5|NZ_CP022521.1_4285630_4286287_+	NA	NA|213aa|down_6|NZ_CP022521.1_4286561_4287200_+	PRK13756, PRK13756, TetR family transcriptional regulator	NA|529aa|down_7|NZ_CP022521.1_4287544_4289131_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|433aa|down_8|NZ_CP022521.1_4291154_4292453_+	cd00075, HATPase, Histidine kinase-like ATPase domain	NA|138aa|down_9|NZ_CP022521.1_4292449_4292863_+	pfam03259, Robl_LC7, Roadblock/LC7 domain
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	23	4280687-4281324	16,22,13	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GAGCCATCCCCGCGTGCGCGGGGCCGAT,GAGCCATCCCCGCGTGCGCGGGGCCGAT,GAGCCATCCCCGCGTGCGCGGGGCCGAT	28,28,28	0	0	NA	NA	NA:NA:NA	10,10,10	10	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|244aa|up_2|NZ_CP022521.1_4275282_4276014_-,NA|94aa|up_0|NZ_CP022521.1_4280378_4280660_-,NA|190aa|down_3|NZ_CP022521.1_4284950_4285520_-,NA|219aa|down_4|NZ_CP022521.1_4285630_4286287_+	NA|563aa|up_9|NZ_CP022521.1_4265439_4267128_+	cd08511, PBP2_NikA_DppA_OppA_like_5, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|318aa|up_8|NZ_CP022521.1_4267129_4268083_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|292aa|up_7|NZ_CP022521.1_4268082_4268958_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|601aa|up_6|NZ_CP022521.1_4268968_4270771_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|563aa|up_5|NZ_CP022521.1_4270965_4272654_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|378aa|up_4|NZ_CP022521.1_4273028_4274162_+	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|141aa|up_3|NZ_CP022521.1_4274573_4274996_+	TIGR02246, hypothetical_protein, conserved hypothetical protein	NA|244aa|up_2|NZ_CP022521.1_4275282_4276014_-	NA	NA|790aa|up_1|NZ_CP022521.1_4276438_4278808_-	pfam00656, Peptidase_C14, Caspase domain	NA|94aa|up_0|NZ_CP022521.1_4280378_4280660_-	NA	NA|280aa|down_0|NZ_CP022521.1_4281524_4282364_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|290aa|down_1|NZ_CP022521.1_4282468_4283338_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|517aa|down_2|NZ_CP022521.1_4283403_4284954_-	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|190aa|down_3|NZ_CP022521.1_4284950_4285520_-	NA	NA|219aa|down_4|NZ_CP022521.1_4285630_4286287_+	NA	NA|213aa|down_5|NZ_CP022521.1_4286561_4287200_+	PRK13756, PRK13756, TetR family transcriptional regulator	NA|529aa|down_6|NZ_CP022521.1_4287544_4289131_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|433aa|down_7|NZ_CP022521.1_4291154_4292453_+	cd00075, HATPase, Histidine kinase-like ATPase domain	NA|138aa|down_8|NZ_CP022521.1_4292449_4292863_+	pfam03259, Robl_LC7, Roadblock/LC7 domain	NA|118aa|down_9|NZ_CP022521.1_4292859_4293213_+	pfam05331, DUF742, Protein of unknown function (DUF742)
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	24	4570819-4571033	17	PILER-CR	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	ATCCCCAACATCCCCGGCGGCACCGGCTCGATGCCCGG	38	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|237aa|up_7|NZ_CP022521.1_4559103_4559814_+,NA|157aa|up_6|NZ_CP022521.1_4560993_4561464_+,NA|348aa|up_4|NZ_CP022521.1_4562369_4563413_+,NA|224aa|up_2|NZ_CP022521.1_4565812_4566484_+,NA|177aa|up_0|NZ_CP022521.1_4568755_4569286_+,NA	NA|265aa|up_9|NZ_CP022521.1_4556972_4557767_+	PRK09583, PRK09583, mycothiol-dependent maleylpyruvate isomerase; Reviewed	NA|226aa|up_8|NZ_CP022521.1_4557880_4558558_+	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|237aa|up_7|NZ_CP022521.1_4559103_4559814_+	NA	NA|157aa|up_6|NZ_CP022521.1_4560993_4561464_+	NA	NA|201aa|up_5|NZ_CP022521.1_4561661_4562264_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|348aa|up_4|NZ_CP022521.1_4562369_4563413_+	NA	NA|753aa|up_3|NZ_CP022521.1_4563409_4565668_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|224aa|up_2|NZ_CP022521.1_4565812_4566484_+	NA	NA|390aa|up_1|NZ_CP022521.1_4566609_4567779_-	COG2356, EndA, Endonuclease I [DNA replication, recombination, and repair]	NA|177aa|up_0|NZ_CP022521.1_4568755_4569286_+	NA	NA|265aa|down_0|NZ_CP022521.1_4571497_4572292_+	pfam14011, ESX-1_EspG, EspG family	NA|213aa|down_1|NZ_CP022521.1_4572380_4573019_+	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|249aa|down_2|NZ_CP022521.1_4573091_4573838_+	pfam10824, T7SS_ESX_EspC, Excreted virulence factor EspC, type VII ESX diderm	NA|399aa|down_3|NZ_CP022521.1_4573981_4575178_-	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain	NA|174aa|down_4|NZ_CP022521.1_4575504_4576026_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|395aa|down_5|NZ_CP022521.1_4576072_4577257_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|470aa|down_6|NZ_CP022521.1_4577410_4578820_-	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|220aa|down_7|NZ_CP022521.1_4579555_4580215_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|475aa|down_8|NZ_CP022521.1_4580211_4581636_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|152aa|down_9|NZ_CP022521.1_4581868_4582324_-	pfam06524, NOA36, NOA36 protein
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	25	4641772-4642335	14,23,18	CRT,CRISPRCasFinder,PILER-CR	no	csm3gr7,cas10,csx10gr5,cas6	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type III-B,Type III-C,Type III-A,Type III-D	GTTGGAACTCCTCGTAGGAGCGATGAAGAC,GTTGGAACTCCTCGTAGGAGCGATGAAGAC,GTTGGAACTCCTCGTAGGAGCGATGAAGAC	30,30,30	0	0	NA	NA	NA:NA:NA	8,7,6	8	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|97aa|up_9|NZ_CP022521.1_4628575_4628866_+,NA|54aa|up_0|NZ_CP022521.1_4640970_4641132_+,NA|349aa|down_0|NZ_CP022521.1_4642605_4643652_-,NA|140aa|down_6|NZ_CP022521.1_4652123_4652543_+,NA|84aa|down_8|NZ_CP022521.1_4654645_4654897_+,NA|183aa|down_9|NZ_CP022521.1_4654884_4655433_+	NA|97aa|up_9|NZ_CP022521.1_4628575_4628866_+	NA	NA|584aa|up_8|NZ_CP022521.1_4628862_4630614_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|333aa|up_7|NZ_CP022521.1_4631117_4632116_-	TIGR03773, anch_rpt_wall, putative ABC transporter-associated repeat protein	NA|301aa|up_6|NZ_CP022521.1_4632534_4633437_-	TIGR03770, anch_rpt_perm, anchored repeat-type ABC transporter, permease subunit	NA|256aa|up_5|NZ_CP022521.1_4633433_4634201_-	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit	NA|302aa|up_4|NZ_CP022521.1_4634197_4635103_-	TIGR03773, anch_rpt_wall, putative ABC transporter-associated repeat protein	NA|516aa|up_3|NZ_CP022521.1_4635147_4636695_-	TIGR03772, anch_rpt_subst, anchored repeat ABC transporter, substrate-binding protein	NA|586aa|up_2|NZ_CP022521.1_4636771_4638529_-	TIGR03773, anch_rpt_wall, putative ABC transporter-associated repeat protein	NA|593aa|up_1|NZ_CP022521.1_4638716_4640495_-	TIGR03773, anch_rpt_wall, putative ABC transporter-associated repeat protein	NA|54aa|up_0|NZ_CP022521.1_4640970_4641132_+	NA	NA|349aa|down_0|NZ_CP022521.1_4642605_4643652_-	NA	csm3gr7|711aa|down_1|NZ_CP022521.1_4645433_4647566_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	cas10|468aa|down_2|NZ_CP022521.1_4647565_4648969_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm3gr7|190aa|down_3|NZ_CP022521.1_4648965_4649535_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csx10gr5|427aa|down_4|NZ_CP022521.1_4649527_4650808_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm3gr7|441aa|down_5|NZ_CP022521.1_4650804_4652127_+	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|140aa|down_6|NZ_CP022521.1_4652123_4652543_+	NA	cas6|246aa|down_7|NZ_CP022521.1_4652539_4653277_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|84aa|down_8|NZ_CP022521.1_4654645_4654897_+	NA	NA|183aa|down_9|NZ_CP022521.1_4654884_4655433_+	NA
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	26	4644026-4644454	15,24,19	CRT,CRISPRCasFinder,PILER-CR	no	csm3gr7,cas10,csx10gr5,cas6	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type III-B,Type III-C,Type III-A,Type III-D	GTTGGAACCCCTCCTAGGGGCGATGAGGACN,GTTGGAACCCCTCCTAGGGGCGATGAGGAC,GTTGGAACCCCTCCTAGGGGCGATGAGGAC	31,30,30	0	0	NA	NA	NA:NA:NA	6,5,4	6	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|54aa|up_1|NZ_CP022521.1_4640970_4641132_+,NA|349aa|up_0|NZ_CP022521.1_4642605_4643652_-,NA|140aa|down_5|NZ_CP022521.1_4652123_4652543_+,NA|84aa|down_7|NZ_CP022521.1_4654645_4654897_+,NA|183aa|down_8|NZ_CP022521.1_4654884_4655433_+,NA|163aa|down_9|NZ_CP022521.1_4655807_4656296_-	NA|584aa|up_9|NZ_CP022521.1_4628862_4630614_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|333aa|up_8|NZ_CP022521.1_4631117_4632116_-	TIGR03773, anch_rpt_wall, putative ABC transporter-associated repeat protein	NA|301aa|up_7|NZ_CP022521.1_4632534_4633437_-	TIGR03770, anch_rpt_perm, anchored repeat-type ABC transporter, permease subunit	NA|256aa|up_6|NZ_CP022521.1_4633433_4634201_-	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit	NA|302aa|up_5|NZ_CP022521.1_4634197_4635103_-	TIGR03773, anch_rpt_wall, putative ABC transporter-associated repeat protein	NA|516aa|up_4|NZ_CP022521.1_4635147_4636695_-	TIGR03772, anch_rpt_subst, anchored repeat ABC transporter, substrate-binding protein	NA|586aa|up_3|NZ_CP022521.1_4636771_4638529_-	TIGR03773, anch_rpt_wall, putative ABC transporter-associated repeat protein	NA|593aa|up_2|NZ_CP022521.1_4638716_4640495_-	TIGR03773, anch_rpt_wall, putative ABC transporter-associated repeat protein	NA|54aa|up_1|NZ_CP022521.1_4640970_4641132_+	NA	NA|349aa|up_0|NZ_CP022521.1_4642605_4643652_-	NA	csm3gr7|711aa|down_0|NZ_CP022521.1_4645433_4647566_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	cas10|468aa|down_1|NZ_CP022521.1_4647565_4648969_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm3gr7|190aa|down_2|NZ_CP022521.1_4648965_4649535_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csx10gr5|427aa|down_3|NZ_CP022521.1_4649527_4650808_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm3gr7|441aa|down_4|NZ_CP022521.1_4650804_4652127_+	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|140aa|down_5|NZ_CP022521.1_4652123_4652543_+	NA	cas6|246aa|down_6|NZ_CP022521.1_4652539_4653277_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|84aa|down_7|NZ_CP022521.1_4654645_4654897_+	NA	NA|183aa|down_8|NZ_CP022521.1_4654884_4655433_+	NA	NA|163aa|down_9|NZ_CP022521.1_4655807_4656296_-	NA
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	27	4653529-4653891	16,20,25	CRT,PILER-CR,CRISPRCasFinder	no	csm3gr7,cas10,csx10gr5,cas6	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type III-B,Type III-C,Type III-A,Type III-D	GTTGTAACCCCTCCTAGGGGCGATGAGGAC,GTTGTAACCCCTCCTAGGGGCGATGAGGAC,GTTGTAACCCCTCCTAGGGGCGATGAGGAC	30,30,30	0	0	NA	NA	NA:NA:NA	5,4,4	5	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|54aa|up_8|NZ_CP022521.1_4640970_4641132_+,NA|349aa|up_7|NZ_CP022521.1_4642605_4643652_-,NA|140aa|up_1|NZ_CP022521.1_4652123_4652543_+,NA|84aa|down_0|NZ_CP022521.1_4654645_4654897_+,NA|183aa|down_1|NZ_CP022521.1_4654884_4655433_+,NA|163aa|down_2|NZ_CP022521.1_4655807_4656296_-,NA|119aa|down_4|NZ_CP022521.1_4658869_4659226_+,NA|142aa|down_5|NZ_CP022521.1_4660227_4660653_+,NA|90aa|down_6|NZ_CP022521.1_4661239_4661509_+,NA|60aa|down_7|NZ_CP022521.1_4661511_4661691_+,NA|63aa|down_9|NZ_CP022521.1_4663150_4663339_+	NA|593aa|up_9|NZ_CP022521.1_4638716_4640495_-	TIGR03773, anch_rpt_wall, putative ABC transporter-associated repeat protein	NA|54aa|up_8|NZ_CP022521.1_4640970_4641132_+	NA	NA|349aa|up_7|NZ_CP022521.1_4642605_4643652_-	NA	csm3gr7|711aa|up_6|NZ_CP022521.1_4645433_4647566_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	cas10|468aa|up_5|NZ_CP022521.1_4647565_4648969_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm3gr7|190aa|up_4|NZ_CP022521.1_4648965_4649535_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	csx10gr5|427aa|up_3|NZ_CP022521.1_4649527_4650808_+	TIGR02674, cas_cyan_RAMP_2, CRISPR-associated RAMP protein, Csx10 family	csm3gr7|441aa|up_2|NZ_CP022521.1_4650804_4652127_+	cd09683, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|140aa|up_1|NZ_CP022521.1_4652123_4652543_+	NA	cas6|246aa|up_0|NZ_CP022521.1_4652539_4653277_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|84aa|down_0|NZ_CP022521.1_4654645_4654897_+	NA	NA|183aa|down_1|NZ_CP022521.1_4654884_4655433_+	NA	NA|163aa|down_2|NZ_CP022521.1_4655807_4656296_-	NA	NA|245aa|down_3|NZ_CP022521.1_4657988_4658723_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|119aa|down_4|NZ_CP022521.1_4658869_4659226_+	NA	NA|142aa|down_5|NZ_CP022521.1_4660227_4660653_+	NA	NA|90aa|down_6|NZ_CP022521.1_4661239_4661509_+	NA	NA|60aa|down_7|NZ_CP022521.1_4661511_4661691_+	NA	NA|453aa|down_8|NZ_CP022521.1_4661792_4663151_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|63aa|down_9|NZ_CP022521.1_4663150_4663339_+	NA
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	28	4693117-4694005	17,26,21,22	CRT,CRISPRCasFinder,PILER-CR,PILER-CR	no	RT,cas6,cas7,cas5,cas3,cas4,cas1,cas2	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Unclear	GTTGCGAACCCTCGTAGGGACTATGAGGAC,TTGCGAACCCTCGTAGGGACTATGAGGAC,TTGCGAACCCTCGTAGGGACTATGAGGAC,GTTGCGAACCCTCGTAGGGACTATGAGGAC	30,29,29,30	0	0	NA	NA	NA:NA:NA:NA	13,13,10,10	13	Unclear	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|84aa|up_1|NZ_CP022521.1_4691698_4691950_+,NA|226aa|up_0|NZ_CP022521.1_4691946_4692624_+,NA|479aa|down_1|NZ_CP022521.1_4696091_4697528_+,NA|401aa|down_8|NZ_CP022521.1_4704974_4706177_-,NA|172aa|down_9|NZ_CP022521.1_4706173_4706689_-	NA|374aa|up_9|NZ_CP022521.1_4683724_4684846_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|202aa|up_8|NZ_CP022521.1_4684838_4685444_-	pfam00156, Pribosyltran, Phosphoribosyl transferase domain	NA|320aa|up_7|NZ_CP022521.1_4685440_4686400_-	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	NA|347aa|up_6|NZ_CP022521.1_4686396_4687437_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|164aa|up_5|NZ_CP022521.1_4687427_4687919_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|186aa|up_4|NZ_CP022521.1_4687915_4688473_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	RT|262aa|up_3|NZ_CP022521.1_4688479_4689265_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|233aa|up_2|NZ_CP022521.1_4689447_4690146_-	COG0603, COG0603, Predicted PP-loop superfamily ATPase [General function prediction only]	NA|84aa|up_1|NZ_CP022521.1_4691698_4691950_+	NA	NA|226aa|up_0|NZ_CP022521.1_4691946_4692624_+	NA	cas6|246aa|down_0|NZ_CP022521.1_4695357_4696095_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|479aa|down_1|NZ_CP022521.1_4696091_4697528_+	NA	cas7|341aa|down_2|NZ_CP022521.1_4697524_4698547_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|225aa|down_3|NZ_CP022521.1_4698543_4699218_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|810aa|down_4|NZ_CP022521.1_4699214_4701644_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas4|165aa|down_5|NZ_CP022521.1_4701643_4702138_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|327aa|down_6|NZ_CP022521.1_4702137_4703118_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|down_7|NZ_CP022521.1_4703120_4703384_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|401aa|down_8|NZ_CP022521.1_4704974_4706177_-	NA	NA|172aa|down_9|NZ_CP022521.1_4706173_4706689_-	NA
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	29	4703496-4704509	23,27,18	PILER-CR,CRISPRCasFinder,CRT	no	RT,cas6,cas7,cas5,cas3,cas4,cas1,cas2	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Unclear	GTTGCGAACCCTCCTAGGGCAGATGAAGAC,GTCTTCATCTGCCCTAGGAGGGTTCGCAAC,GTCTTCATCTGCCCTAGGAGGGTTCGCAAC	30,30,30	0	0	NA	NA	NA:NA:NA	14,15,15	15	Unclear	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|84aa|up_9|NZ_CP022521.1_4691698_4691950_+,NA|226aa|up_8|NZ_CP022521.1_4691946_4692624_+,NA|479aa|up_6|NZ_CP022521.1_4696091_4697528_+,NA|401aa|down_0|NZ_CP022521.1_4704974_4706177_-,NA|172aa|down_1|NZ_CP022521.1_4706173_4706689_-,NA|124aa|down_6|NZ_CP022521.1_4709584_4709956_+,NA|190aa|down_7|NZ_CP022521.1_4710408_4710978_+,NA|188aa|down_8|NZ_CP022521.1_4711214_4711778_+	NA|84aa|up_9|NZ_CP022521.1_4691698_4691950_+	NA	NA|226aa|up_8|NZ_CP022521.1_4691946_4692624_+	NA	cas6|246aa|up_7|NZ_CP022521.1_4695357_4696095_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|479aa|up_6|NZ_CP022521.1_4696091_4697528_+	NA	cas7|341aa|up_5|NZ_CP022521.1_4697524_4698547_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|225aa|up_4|NZ_CP022521.1_4698543_4699218_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|810aa|up_3|NZ_CP022521.1_4699214_4701644_+	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas4|165aa|up_2|NZ_CP022521.1_4701643_4702138_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|327aa|up_1|NZ_CP022521.1_4702137_4703118_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_0|NZ_CP022521.1_4703120_4703384_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|401aa|down_0|NZ_CP022521.1_4704974_4706177_-	NA	NA|172aa|down_1|NZ_CP022521.1_4706173_4706689_-	NA	NA|119aa|down_2|NZ_CP022521.1_4706685_4707042_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|195aa|down_3|NZ_CP022521.1_4707249_4707834_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|150aa|down_4|NZ_CP022521.1_4708053_4708503_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|215aa|down_5|NZ_CP022521.1_4708458_4709103_-	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|124aa|down_6|NZ_CP022521.1_4709584_4709956_+	NA	NA|190aa|down_7|NZ_CP022521.1_4710408_4710978_+	NA	NA|188aa|down_8|NZ_CP022521.1_4711214_4711778_+	NA	NA|473aa|down_9|NZ_CP022521.1_4712634_4714053_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	30	4743475-4746065	28,19,24	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	GTCCGCTCCGCGCAAGCGGAGGTGAGCCG,GTCCGCTCCGCGCAAGCGGAGGTGAGCCG,GTCCGCTCCGCGCAAGCGGAGGTGAGCC	29,29,28	0	0	NA	NA	NA:NA:NA	42,42,38	42	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|95aa|up_4|NZ_CP022521.1_4736019_4736304_-,NA|288aa|up_3|NZ_CP022521.1_4736495_4737359_-,NA	NA|350aa|up_9|NZ_CP022521.1_4727208_4728258_-	pfam13814, Replic_Relax, Replication-relaxation	NA|846aa|up_8|NZ_CP022521.1_4728296_4730834_-	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|631aa|up_7|NZ_CP022521.1_4730866_4732759_-	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|378aa|up_6|NZ_CP022521.1_4732746_4733880_-	pfam12666, PrgI, PrgI family protein	NA|681aa|up_5|NZ_CP022521.1_4733876_4735919_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|95aa|up_4|NZ_CP022521.1_4736019_4736304_-	NA	NA|288aa|up_3|NZ_CP022521.1_4736495_4737359_-	NA	NA|366aa|up_2|NZ_CP022521.1_4739032_4740130_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|310aa|up_1|NZ_CP022521.1_4741777_4742707_+	COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]	NA|65aa|up_0|NZ_CP022521.1_4742797_4742992_+	pfam12728, HTH_17, Helix-turn-helix domain	cas2|111aa|down_0|NZ_CP022521.1_4747102_4747435_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|323aa|down_1|NZ_CP022521.1_4747475_4748444_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|215aa|down_2|NZ_CP022521.1_4748440_4749085_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|288aa|down_3|NZ_CP022521.1_4749081_4749945_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|394aa|down_4|NZ_CP022521.1_4749941_4751123_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|263aa|down_5|NZ_CP022521.1_4751180_4751969_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|538aa|down_6|NZ_CP022521.1_4751965_4753579_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|928aa|down_7|NZ_CP022521.1_4753751_4756535_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|186aa|down_8|NZ_CP022521.1_4759428_4759986_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|287aa|down_9|NZ_CP022521.1_4760800_4761661_-	pfam07591, PT-HINT, Pretoxin HINT domain
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	31	4756854-4759012	29,20,25,26	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	CGGCTCACCTCCGCTTGCGCGGAGCGCAC,CGGCTCACCTCCGCTTGCGCGGAGCGCAC,GTGCGCTCCGCGCAAGCGGAGGTGAGCCG,GTGCGCTCCGCGCAAGCGGAGGTGAGCCG	29,29,29,29	0	0	NA	NA	NA:NA:NA:NA	35,34,19,19	35	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA,NA|237aa|down_4|NZ_CP022521.1_4763904_4764615_-	NA|310aa|up_9|NZ_CP022521.1_4741777_4742707_+	COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]	NA|65aa|up_8|NZ_CP022521.1_4742797_4742992_+	pfam12728, HTH_17, Helix-turn-helix domain	cas2|111aa|up_7|NZ_CP022521.1_4747102_4747435_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|323aa|up_6|NZ_CP022521.1_4747475_4748444_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|215aa|up_5|NZ_CP022521.1_4748440_4749085_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|288aa|up_4|NZ_CP022521.1_4749081_4749945_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|394aa|up_3|NZ_CP022521.1_4749941_4751123_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|263aa|up_2|NZ_CP022521.1_4751180_4751969_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|538aa|up_1|NZ_CP022521.1_4751965_4753579_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|928aa|up_0|NZ_CP022521.1_4753751_4756535_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|186aa|down_0|NZ_CP022521.1_4759428_4759986_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|287aa|down_1|NZ_CP022521.1_4760800_4761661_-	pfam07591, PT-HINT, Pretoxin HINT domain	NA|182aa|down_2|NZ_CP022521.1_4761747_4762293_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|245aa|down_3|NZ_CP022521.1_4763168_4763903_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|237aa|down_4|NZ_CP022521.1_4763904_4764615_-	NA	NA|288aa|down_5|NZ_CP022521.1_4764611_4765475_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|163aa|down_6|NZ_CP022521.1_4765554_4766043_+	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|299aa|down_7|NZ_CP022521.1_4766755_4767652_-	cd05155, APH_ChoK_like_1, Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and Choline kinase	NA|126aa|down_8|NZ_CP022521.1_4768333_4768711_-	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|86aa|down_9|NZ_CP022521.1_4768707_4768965_-	COG2212, MnhF, Multisubunit Na+/H+ antiporter, MnhF subunit [Inorganic ion transport and metabolism]
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	32	5000402-5000917	30,21,27	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GGCTCACCCCCGCCTGCGCGGGGAATAC,GGCTCACCCCCGCCTGCGCGGGGAATAC,GGCTCACCCCCGCCTGCGCGGGGAATAC	28,28,28	0	0	NA	NA	NA:NA:NA	8,8,7	8	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|133aa|up_9|NZ_CP022521.1_4987269_4987668_-,NA|230aa|up_3|NZ_CP022521.1_4992958_4993648_-,NA|119aa|up_2|NZ_CP022521.1_4994302_4994659_-,NA|225aa|up_0|NZ_CP022521.1_4999519_5000194_-,NA	NA|133aa|up_9|NZ_CP022521.1_4987269_4987668_-	NA	NA|284aa|up_8|NZ_CP022521.1_4988471_4989323_+	pfam01381, HTH_3, Helix-turn-helix	NA|63aa|up_7|NZ_CP022521.1_4989329_4989518_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|63aa|up_6|NZ_CP022521.1_4989608_4989797_+	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|479aa|up_5|NZ_CP022521.1_4990247_4991684_+	TIGR04188, conserved_hypothetical_protein, methyltransferase, ATP-grasp peptide maturase system	NA|259aa|up_4|NZ_CP022521.1_4991703_4992480_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|230aa|up_3|NZ_CP022521.1_4992958_4993648_-	NA	NA|119aa|up_2|NZ_CP022521.1_4994302_4994659_-	NA	NA|1189aa|up_1|NZ_CP022521.1_4994655_4998222_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|225aa|up_0|NZ_CP022521.1_4999519_5000194_-	NA	NA|123aa|down_0|NZ_CP022521.1_5001067_5001436_-	pfam13788, DUF4180, Domain of unknown function (DUF4180)	NA|150aa|down_1|NZ_CP022521.1_5001428_5001878_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|389aa|down_2|NZ_CP022521.1_5002063_5003230_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|222aa|down_3|NZ_CP022521.1_5003226_5003892_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|425aa|down_4|NZ_CP022521.1_5004869_5006144_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|259aa|down_5|NZ_CP022521.1_5006158_5006935_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|846aa|down_6|NZ_CP022521.1_5006955_5009493_+	cd18584, ABC_6TM_AarD_CydD, Six-transmembrane helical domain (6TM) of the CydD, a component of the ABC cysteine/GSH transporter, and a homolog AarD	NA|548aa|down_7|NZ_CP022521.1_5009489_5011133_+	TIGR02868, ABC_transporter_ATP-binding_protein, thiol reductant ABC exporter, CydC subunit	NA|220aa|down_8|NZ_CP022521.1_5011169_5011829_+	PRK12647, PRK12647, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|683aa|down_9|NZ_CP022521.1_5011762_5013811_-	COG2936, COG2936, Predicted acyl esterases [General function prediction only]
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	33	5039320-5039835	31,22,28	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GGCTCACCCCCGCTTGCGCGGGGCGGAC,GGCTCACCCCCGCTTGCGCGGGGCGGAC,GTCCGCCCCGCGCAAGCGGGGGTGAGCC	28,28,28	0	0	NA	NA	NA:NA:NA	8,8,4	8	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|221aa|up_1|NZ_CP022521.1_5036755_5037418_-,NA	NA|142aa|up_9|NZ_CP022521.1_5030910_5031336_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|267aa|up_8|NZ_CP022521.1_5031332_5032133_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|103aa|up_7|NZ_CP022521.1_5032179_5032488_-	pfam02467, Whib, Transcription factor WhiB	NA|123aa|up_6|NZ_CP022521.1_5032826_5033195_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|137aa|up_5|NZ_CP022521.1_5033508_5033919_+	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|109aa|up_4|NZ_CP022521.1_5034190_5034517_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|331aa|up_3|NZ_CP022521.1_5034816_5035809_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|244aa|up_2|NZ_CP022521.1_5035982_5036714_-	pfam04343, DUF488, Protein of unknown function, DUF488	NA|221aa|up_1|NZ_CP022521.1_5036755_5037418_-	NA	NA|500aa|up_0|NZ_CP022521.1_5037410_5038910_-	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|202aa|down_0|NZ_CP022521.1_5040256_5040862_+	cd07817, SRPBCC_8, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|270aa|down_1|NZ_CP022521.1_5041714_5042524_-	pfam01975, SurE, Survival protein SurE	NA|306aa|down_2|NZ_CP022521.1_5042558_5043476_-	TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family	NA|182aa|down_3|NZ_CP022521.1_5043967_5044513_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|403aa|down_4|NZ_CP022521.1_5044752_5045961_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|97aa|down_5|NZ_CP022521.1_5046209_5046500_-	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|144aa|down_6|NZ_CP022521.1_5046496_5046928_-	pfam12277, DUF3618, Protein of unknown function (DUF3618)	NA|141aa|down_7|NZ_CP022521.1_5046924_5047347_-	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|272aa|down_8|NZ_CP022521.1_5047785_5048601_-	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|194aa|down_9|NZ_CP022521.1_5048895_5049477_-	PRK06995, flhF, flagellar biosynthesis protein FlhF
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	34	5321173-5321434	29,23,32	PILER-CR,CRT,CRISPRCasFinder	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GTTGCGATCCTCACCGGCCCCGGAAGGCCGGTGCCACCC,GGGTGGCACCGGCCTTCCGGGGCCGGTGAGGATCGCAAC,GTGGCACCGGCCTTCCGGGGCCGGTGAGGATCGCAACA	39,39,38	0	0	NA	NA	NA:NA:NA	3,3,3	3	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|84aa|up_8|NZ_CP022521.1_5306652_5306904_-,NA|49aa|down_6|NZ_CP022521.1_5327172_5327319_+	NA|117aa|up_9|NZ_CP022521.1_5306228_5306579_-	pfam01337, Barstar, Barstar (barnase inhibitor)	NA|84aa|up_8|NZ_CP022521.1_5306652_5306904_-	NA	NA|322aa|up_7|NZ_CP022521.1_5306934_5307900_+	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family	NA|176aa|up_6|NZ_CP022521.1_5307896_5308424_+	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|215aa|up_5|NZ_CP022521.1_5308616_5309261_-	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|339aa|up_4|NZ_CP022521.1_5309921_5310938_-	pfam03060, NMO, Nitronate monooxygenase	NA|252aa|up_3|NZ_CP022521.1_5311044_5311800_+	pfam14325, DUF4383, Domain of unknown function (DUF4383)	NA|65aa|up_2|NZ_CP022521.1_5312446_5312641_+	pfam11248, DUF3046, Protein of unknown function (DUF3046)	NA|674aa|up_1|NZ_CP022521.1_5312967_5314989_-	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family	NA|1813aa|up_0|NZ_CP022521.1_5315287_5320726_+	PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional	NA|160aa|down_0|NZ_CP022521.1_5321692_5322172_+	pfam00293, NUDIX, NUDIX domain	NA|260aa|down_1|NZ_CP022521.1_5322821_5323601_-	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|131aa|down_2|NZ_CP022521.1_5323597_5323990_-	pfam18726, HEPN_SAV_6107, SAV_6107-like HEPN	NA|169aa|down_3|NZ_CP022521.1_5324188_5324695_+	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|171aa|down_4|NZ_CP022521.1_5324748_5325261_+	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|567aa|down_5|NZ_CP022521.1_5325473_5327174_-	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)	NA|49aa|down_6|NZ_CP022521.1_5327172_5327319_+	NA	NA|223aa|down_7|NZ_CP022521.1_5327526_5328195_+	pfam11353, DUF3153, Protein of unknown function (DUF3153)	NA|295aa|down_8|NZ_CP022521.1_5328354_5329239_-	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|372aa|down_9|NZ_CP022521.1_5329354_5330470_+	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	35	5381299-5381396	33	CRISPRCasFinder	no	DEDDh	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Unclear	CGCCGCAGCCGGTCCAGCTCCGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|133aa|up_4|NZ_CP022521.1_5373303_5373702_-,NA|137aa|down_6|NZ_CP022521.1_5390087_5390498_+	NA|317aa|up_9|NZ_CP022521.1_5368439_5369390_-	TIGR00744, Glucokinase_Glucose_kinase	NA|410aa|up_8|NZ_CP022521.1_5369383_5370613_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|400aa|up_7|NZ_CP022521.1_5370619_5371819_-	cd02035, ArsA, Arsenical pump-driving ATPase ArsA	NA|155aa|up_6|NZ_CP022521.1_5371827_5372292_-	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|262aa|up_5|NZ_CP022521.1_5372346_5373132_-	COG2129, COG2129, Predicted phosphoesterases, related to the Icc protein [General function prediction only]	NA|133aa|up_4|NZ_CP022521.1_5373303_5373702_-	NA	NA|604aa|up_3|NZ_CP022521.1_5373808_5375620_+	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|418aa|up_2|NZ_CP022521.1_5375775_5377029_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|487aa|up_1|NZ_CP022521.1_5377210_5378671_-	pfam04450, BSP, Peptidase of plants and bacteria	NA|345aa|up_0|NZ_CP022521.1_5379027_5380062_-	pfam00877, NLPC_P60, NlpC/P60 family	DEDDh|573aa|down_0|NZ_CP022521.1_5382594_5384313_+	PRK07883, PRK07883, DEDD exonuclease domain-containing protein	NA|95aa|down_1|NZ_CP022521.1_5384425_5384710_+	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|567aa|down_2|NZ_CP022521.1_5384923_5386624_-	COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy production and conversion]	NA|376aa|down_3|NZ_CP022521.1_5386620_5387748_-	COG0723, QcrA, Rieske Fe-S protein [Energy production and conversion]	NA|270aa|down_4|NZ_CP022521.1_5387744_5388554_-	COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion]	NA|204aa|down_5|NZ_CP022521.1_5388604_5389216_-	COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]	NA|137aa|down_6|NZ_CP022521.1_5390087_5390498_+	NA	NA|357aa|down_7|NZ_CP022521.1_5390512_5391583_+	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|133aa|down_8|NZ_CP022521.1_5392423_5392822_-	pfam12270, Cyt_c_ox_IV, Cytochrome c oxidase subunit IV	NA|306aa|down_9|NZ_CP022521.1_5392873_5393791_-	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	36	5554145-5554406	24,30,34	CRT,PILER-CR,CRISPRCasFinder	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	CCGTTGCGATCCTCACCGGCTCCGCAGAG,GTGGCACCGGCTCTGCGGAGCCGGTGAGGATCGCAA,GCGATCCTCACCGGCTCCGCAGAGCCGGTGCCAC	29,36,34	0	0	NA	NA	NA:NA:NA	3,3,3	3	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA,NA|133aa|down_1|NZ_CP022521.1_5555461_5555860_+	NA|269aa|up_9|NZ_CP022521.1_5543946_5544753_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|61aa|up_8|NZ_CP022521.1_5544772_5544955_-	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed	NA|202aa|up_7|NZ_CP022521.1_5544957_5545563_-	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]	NA|244aa|up_6|NZ_CP022521.1_5545849_5546581_-	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning]	NA|144aa|up_5|NZ_CP022521.1_5546699_5547131_-	cd00607, RNase_Sa, RNase_Sa	NA|161aa|up_4|NZ_CP022521.1_5547239_5547722_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|205aa|up_3|NZ_CP022521.1_5548095_5548710_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|244aa|up_2|NZ_CP022521.1_5548786_5549518_-	cd05233, SDR_c, classical (c) SDRs	NA|180aa|up_1|NZ_CP022521.1_5549567_5550107_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|1126aa|up_0|NZ_CP022521.1_5550505_5553883_-	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|216aa|down_0|NZ_CP022521.1_5554620_5555268_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|133aa|down_1|NZ_CP022521.1_5555461_5555860_+	NA	NA|423aa|down_2|NZ_CP022521.1_5556060_5557329_+	pfam04229, GrpB, GrpB protein	NA|164aa|down_3|NZ_CP022521.1_5557400_5557892_+	pfam04892, VanZ, VanZ like family	NA|735aa|down_4|NZ_CP022521.1_5558081_5560286_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|627aa|down_5|NZ_CP022521.1_5560324_5562205_-	pfam13684, Dak1_2, Dihydroxyacetone kinase family	NA|64aa|down_6|NZ_CP022521.1_5562625_5562817_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|226aa|down_7|NZ_CP022521.1_5563177_5563855_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|136aa|down_8|NZ_CP022521.1_5564134_5564542_-	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]	NA|220aa|down_9|NZ_CP022521.1_5564622_5565282_+	pfam13305, WHG, WHG domain
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	37	5575178-5575691	25,31,35	CRT,PILER-CR,CRISPRCasFinder	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	GAGCCATCCCCGCGCGTGCGGGGCCGAT,GAGCCATCCCCGCGCGTGCGGGGCCGAT,GAGCCATCCCCGCGCGTGCGGGGCCGAT	28,28,28	0	0	NA	NA	NA:NA:NA	8,7,7	8	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|317aa|up_1|NZ_CP022521.1_5572629_5573580_+,NA|322aa|up_0|NZ_CP022521.1_5574084_5575050_+,NA|107aa|down_7|NZ_CP022521.1_5586181_5586502_-	NA|256aa|up_9|NZ_CP022521.1_5565300_5566068_-	pfam10067, DUF2306, Predicted membrane protein (DUF2306)	NA|175aa|up_8|NZ_CP022521.1_5566738_5567263_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|211aa|up_7|NZ_CP022521.1_5567448_5568081_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|323aa|up_6|NZ_CP022521.1_5568425_5569394_-	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|78aa|up_5|NZ_CP022521.1_5569496_5569730_+	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|190aa|up_4|NZ_CP022521.1_5569771_5570341_+	pfam12028, DUF3515, Protein of unknown function (DUF3515)	NA|133aa|up_3|NZ_CP022521.1_5571356_5571755_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|294aa|up_2|NZ_CP022521.1_5571751_5572633_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|317aa|up_1|NZ_CP022521.1_5572629_5573580_+	NA	NA|322aa|up_0|NZ_CP022521.1_5574084_5575050_+	NA	cas3|1004aa|down_0|NZ_CP022521.1_5575848_5578860_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cse2gr11|207aa|down_1|NZ_CP022521.1_5580890_5581511_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|377aa|down_2|NZ_CP022521.1_5581665_5582796_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|269aa|down_3|NZ_CP022521.1_5582792_5583599_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|291aa|down_4|NZ_CP022521.1_5583604_5584477_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|347aa|down_5|NZ_CP022521.1_5584469_5585510_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|107aa|down_6|NZ_CP022521.1_5585506_5585827_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|107aa|down_7|NZ_CP022521.1_5586181_5586502_-	NA	NA|366aa|down_8|NZ_CP022521.1_5587445_5588543_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|619aa|down_9|NZ_CP022521.1_5589933_5591790_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	38	5586674-5587372	36,26,32,33	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	GAGCCATCCCCGCGTGCGCGGGGCCGAT,GAGCCATCCCCGCGTGCGCGGGGCCGAT,CGGAGCCATCCCCGCGTGCGCGGGGCCGATG,CGCGGAGCCATCCCCGCGTGCGCGGGGCCGAT	28,28,31,32	0	0	NA	NA	NA:NA:NA:NA	11,11,6,6	11	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|317aa|up_9|NZ_CP022521.1_5572629_5573580_+,NA|322aa|up_8|NZ_CP022521.1_5574084_5575050_+,NA|107aa|up_0|NZ_CP022521.1_5586181_5586502_-,NA	NA|317aa|up_9|NZ_CP022521.1_5572629_5573580_+	NA	NA|322aa|up_8|NZ_CP022521.1_5574084_5575050_+	NA	cas3|1004aa|up_7|NZ_CP022521.1_5575848_5578860_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cse2gr11|207aa|up_6|NZ_CP022521.1_5580890_5581511_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|377aa|up_5|NZ_CP022521.1_5581665_5582796_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|269aa|up_4|NZ_CP022521.1_5582792_5583599_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|291aa|up_3|NZ_CP022521.1_5583604_5584477_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|347aa|up_2|NZ_CP022521.1_5584469_5585510_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|107aa|up_1|NZ_CP022521.1_5585506_5585827_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|107aa|up_0|NZ_CP022521.1_5586181_5586502_-	NA	NA|366aa|down_0|NZ_CP022521.1_5587445_5588543_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|619aa|down_1|NZ_CP022521.1_5589933_5591790_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|111aa|down_2|NZ_CP022521.1_5591811_5592144_+	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase	NA|166aa|down_3|NZ_CP022521.1_5593446_5593944_-	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|387aa|down_4|NZ_CP022521.1_5595704_5596865_-	PRK07582, PRK07582, cystathionine gamma-lyase; Validated	NA|335aa|down_5|NZ_CP022521.1_5596861_5597866_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|226aa|down_6|NZ_CP022521.1_5598025_5598703_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|221aa|down_7|NZ_CP022521.1_5598939_5599602_+	TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase	NA|743aa|down_8|NZ_CP022521.1_5599783_5602012_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|330aa|down_9|NZ_CP022521.1_5602057_5603047_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	39	5589087-5589785	34,37,27	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	GTCGG------CCCCGCACGCGCGGGGATAGCTC,GTCGGCCCCGCACGCGCGGGGATAGCTC,CCCCGCACGCGCGGGGATAGCTC	34,28,23	0	0	NA	NA	NA:NA:NA	11,11,11	11	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|322aa|up_9|NZ_CP022521.1_5574084_5575050_+,NA|107aa|up_1|NZ_CP022521.1_5586181_5586502_-,NA	NA|322aa|up_9|NZ_CP022521.1_5574084_5575050_+	NA	cas3|1004aa|up_8|NZ_CP022521.1_5575848_5578860_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cse2gr11|207aa|up_7|NZ_CP022521.1_5580890_5581511_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|377aa|up_6|NZ_CP022521.1_5581665_5582796_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|269aa|up_5|NZ_CP022521.1_5582792_5583599_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|291aa|up_4|NZ_CP022521.1_5583604_5584477_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|347aa|up_3|NZ_CP022521.1_5584469_5585510_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|107aa|up_2|NZ_CP022521.1_5585506_5585827_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|107aa|up_1|NZ_CP022521.1_5586181_5586502_-	NA	NA|366aa|up_0|NZ_CP022521.1_5587445_5588543_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|619aa|down_0|NZ_CP022521.1_5589933_5591790_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|111aa|down_1|NZ_CP022521.1_5591811_5592144_+	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase	NA|166aa|down_2|NZ_CP022521.1_5593446_5593944_-	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|387aa|down_3|NZ_CP022521.1_5595704_5596865_-	PRK07582, PRK07582, cystathionine gamma-lyase; Validated	NA|335aa|down_4|NZ_CP022521.1_5596861_5597866_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|226aa|down_5|NZ_CP022521.1_5598025_5598703_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|221aa|down_6|NZ_CP022521.1_5598939_5599602_+	TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase	NA|743aa|down_7|NZ_CP022521.1_5599783_5602012_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|330aa|down_8|NZ_CP022521.1_5602057_5603047_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|277aa|down_9|NZ_CP022521.1_5603951_5604782_-	cd13831, HU, histone-like DNA-binding protein HU
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	40	5592407-5592800	35,38,28	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	GTCGG------CCCCGCACACGCGGGGATGGCTC,GTCGGCCCCGCACACGCGGGGATGGCTC,GTCGGCCCCGCACACGCGGGGATGGCTC	34,28,28	0	0	NA	NA	N:A	5,6,6	6	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|107aa|up_3|NZ_CP022521.1_5586181_5586502_-,NA	cse2gr11|207aa|up_9|NZ_CP022521.1_5580890_5581511_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|377aa|up_8|NZ_CP022521.1_5581665_5582796_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|269aa|up_7|NZ_CP022521.1_5582792_5583599_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|291aa|up_6|NZ_CP022521.1_5583604_5584477_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|347aa|up_5|NZ_CP022521.1_5584469_5585510_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|107aa|up_4|NZ_CP022521.1_5585506_5585827_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|107aa|up_3|NZ_CP022521.1_5586181_5586502_-	NA	NA|366aa|up_2|NZ_CP022521.1_5587445_5588543_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|619aa|up_1|NZ_CP022521.1_5589933_5591790_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|111aa|up_0|NZ_CP022521.1_5591811_5592144_+	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase	NA|166aa|down_0|NZ_CP022521.1_5593446_5593944_-	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|387aa|down_1|NZ_CP022521.1_5595704_5596865_-	PRK07582, PRK07582, cystathionine gamma-lyase; Validated	NA|335aa|down_2|NZ_CP022521.1_5596861_5597866_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|226aa|down_3|NZ_CP022521.1_5598025_5598703_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|221aa|down_4|NZ_CP022521.1_5598939_5599602_+	TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase	NA|743aa|down_5|NZ_CP022521.1_5599783_5602012_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|330aa|down_6|NZ_CP022521.1_5602057_5603047_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|277aa|down_7|NZ_CP022521.1_5603951_5604782_-	cd13831, HU, histone-like DNA-binding protein HU	NA|201aa|down_8|NZ_CP022521.1_5605035_5605638_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|468aa|down_9|NZ_CP022521.1_5605821_5607225_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	41	5592954-5593041	39	CRISPRCasFinder	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Type I-E	GTCGGCCCCGCACACGCGGGGATGGCTC	28	0	0	NA	NA	N:A	1	1	TypeI-E	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|107aa|up_3|NZ_CP022521.1_5586181_5586502_-,NA	cse2gr11|207aa|up_9|NZ_CP022521.1_5580890_5581511_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|377aa|up_8|NZ_CP022521.1_5581665_5582796_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|269aa|up_7|NZ_CP022521.1_5582792_5583599_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|291aa|up_6|NZ_CP022521.1_5583604_5584477_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|347aa|up_5|NZ_CP022521.1_5584469_5585510_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|107aa|up_4|NZ_CP022521.1_5585506_5585827_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|107aa|up_3|NZ_CP022521.1_5586181_5586502_-	NA	NA|366aa|up_2|NZ_CP022521.1_5587445_5588543_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|619aa|up_1|NZ_CP022521.1_5589933_5591790_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|111aa|up_0|NZ_CP022521.1_5591811_5592144_+	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase	NA|166aa|down_0|NZ_CP022521.1_5593446_5593944_-	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|387aa|down_1|NZ_CP022521.1_5595704_5596865_-	PRK07582, PRK07582, cystathionine gamma-lyase; Validated	NA|335aa|down_2|NZ_CP022521.1_5596861_5597866_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|226aa|down_3|NZ_CP022521.1_5598025_5598703_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|221aa|down_4|NZ_CP022521.1_5598939_5599602_+	TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase	NA|743aa|down_5|NZ_CP022521.1_5599783_5602012_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|330aa|down_6|NZ_CP022521.1_5602057_5603047_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|277aa|down_7|NZ_CP022521.1_5603951_5604782_-	cd13831, HU, histone-like DNA-binding protein HU	NA|201aa|down_8|NZ_CP022521.1_5605035_5605638_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|468aa|down_9|NZ_CP022521.1_5605821_5607225_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	42	5858030-5858564	36,40,29	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	ATCGG------CCCCGCGCGTGCGGGGATGGCTC,ATCGGCCCCGCGCGTGCGGGGATGGCTC,ATCGGCCCCGCGCGTGCGGGGATGGCTC	34,28,28	0	0	NA	NA	N:A	7,8,8	8	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA|136aa|up_6|NZ_CP022521.1_5851305_5851713_-,NA|75aa|down_0|NZ_CP022521.1_5859146_5859371_+,NA|243aa|down_1|NZ_CP022521.1_5859367_5860096_+	NA|263aa|up_9|NZ_CP022521.1_5846404_5847193_+	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases	NA|845aa|up_8|NZ_CP022521.1_5848353_5850888_-	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|106aa|up_7|NZ_CP022521.1_5850919_5851237_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|136aa|up_6|NZ_CP022521.1_5851305_5851713_-	NA	NA|227aa|up_5|NZ_CP022521.1_5851893_5852574_-	pfam01955, CbiZ, Adenosylcobinamide amidohydrolase	NA|320aa|up_4|NZ_CP022521.1_5852722_5853682_-	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	NA|179aa|up_3|NZ_CP022521.1_5853678_5854215_-	pfam03703, bPH_2, Bacterial PH domain	NA|287aa|up_2|NZ_CP022521.1_5854855_5855716_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|548aa|up_1|NZ_CP022521.1_5855899_5857543_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|78aa|up_0|NZ_CP022521.1_5857690_5857924_+	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit	NA|75aa|down_0|NZ_CP022521.1_5859146_5859371_+	NA	NA|243aa|down_1|NZ_CP022521.1_5859367_5860096_+	NA	NA|131aa|down_2|NZ_CP022521.1_5861469_5861862_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|659aa|down_3|NZ_CP022521.1_5862955_5864932_+	PRK05371, PRK05371, x-prolyl-dipeptidyl aminopeptidase; Provisional	NA|370aa|down_4|NZ_CP022521.1_5865266_5866376_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|542aa|down_5|NZ_CP022521.1_5866372_5867998_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|365aa|down_6|NZ_CP022521.1_5868078_5869173_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|373aa|down_7|NZ_CP022521.1_5869304_5870423_-	COG2828, COG2828, Uncharacterized protein conserved in bacteria [Function unknown]	NA|314aa|down_8|NZ_CP022521.1_5870541_5871483_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|210aa|down_9|NZ_CP022521.1_5871823_5872453_+	PRK00148, PRK00148, Maf-like protein; Reviewed
GCF_002234535.1_ASM223453v1	NZ_CP022521	Actinoalloteichus hoggarensis strain DSM 45943 chromosome, complete genome	43	5936500-5936588	41	CRISPRCasFinder	no		cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	Orphan	GCCGCACCCGCGCCGGCTCGCCGGA	25	0	0	NA	NA	N:A	1	1	Orphan	cas3,csa3,WYL,cas4,DinG,casR,DEDDh,cas5,cas8c,cas7,cas2,cas1,cas6e,cse2gr11,cas8e,Cas9_archaeal,csm3gr7,cas10,csx10gr5,cas6,RT	NA,NA	NA|255aa|up_9|NZ_CP022521.1_5926583_5927348_-	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|312aa|up_8|NZ_CP022521.1_5927347_5928283_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|136aa|up_7|NZ_CP022521.1_5928687_5929095_+	COG3631, COG3631, Ketosteroid isomerase-related protein [General function prediction only]	NA|289aa|up_6|NZ_CP022521.1_5929091_5929958_+	TIGR03649, ergot_alkaloid_biosynthetic_protein_A, ergot alkaloid biosynthesis protein, AFUA_2G17970 family	NA|195aa|up_5|NZ_CP022521.1_5929976_5930561_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|506aa|up_4|NZ_CP022521.1_5930836_5932354_-	pfam08386, Abhydrolase_4, TAP-like protein	NA|215aa|up_3|NZ_CP022521.1_5932669_5933314_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|353aa|up_2|NZ_CP022521.1_5933310_5934369_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|246aa|up_1|NZ_CP022521.1_5934520_5935258_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|256aa|up_0|NZ_CP022521.1_5935254_5936022_+	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|404aa|down_0|NZ_CP022521.1_5936597_5937809_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|480aa|down_1|NZ_CP022521.1_5937780_5939220_-	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases	NA|214aa|down_2|NZ_CP022521.1_5939523_5940165_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|170aa|down_3|NZ_CP022521.1_5940287_5940797_+	COG3402, COG3402, Uncharacterized conserved protein [Function unknown]	NA|501aa|down_4|NZ_CP022521.1_5940793_5942296_+	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|121aa|down_5|NZ_CP022521.1_5942645_5943008_-	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|89aa|down_6|NZ_CP022521.1_5943004_5943271_-	PRK07948, PRK07948, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|205aa|down_7|NZ_CP022521.1_5943272_5943887_-	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|511aa|down_8|NZ_CP022521.1_5943889_5945422_-	PRK12665, PRK12665, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|143aa|down_9|NZ_CP022521.1_5945418_5945847_-	PRK07946, PRK07946, putative monovalent cation/H+ antiporter subunit C; Reviewed
