assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002234475.1_ASM223447v1	NZ_CP022467	Salmonella enterica subsp. salamae serovar 57:z29:z42 strain ST114 chromosome, complete genome	1	1001272-1001971	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG,GTGTTCCCCGCGCTAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,11,11	11	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|447aa|up_9|NZ_CP022467.1_985665_987006_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|NZ_CP022467.1_987026_988367_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|NZ_CP022467.1_988444_989587_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|919aa|up_6|NZ_CP022467.1_989659_992416_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|NZ_CP022467.1_992473_993769_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|NZ_CP022467.1_993820_996055_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|NZ_CP022467.1_996129_996921_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP022467.1_997148_998786_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP022467.1_998868_1000167_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP022467.1_1000303_1000975_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP022467.1_1002068_1002866_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP022467.1_1002955_1003318_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP022467.1_1003744_1005544_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP022467.1_1005543_1007256_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP022467.1_1007369_1008104_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP022467.1_1008191_1009145_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|899aa|down_6|NZ_CP022467.1_1009533_1012230_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|down_7|NZ_CP022467.1_1012394_1012694_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|down_8|NZ_CP022467.1_1012703_1013045_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	cas8e|512aa|down_9|NZ_CP022467.1_1013400_1014936_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1
GCF_002234475.1_ASM223447v1	NZ_CP022467	Salmonella enterica subsp. salamae serovar 57:z29:z42 strain ST114 chromosome, complete genome	2	1019373-1021353	2,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	32,32	32	TypeI-E	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	cas3|899aa|up_9|NZ_CP022467.1_1009533_1012230_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|100aa|up_8|NZ_CP022467.1_1012394_1012694_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|114aa|up_7|NZ_CP022467.1_1012703_1013045_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]	cas8e|512aa|up_6|NZ_CP022467.1_1013400_1014936_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP022467.1_1014952_1015555_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP022467.1_1015577_1016636_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP022467.1_1016645_1017371_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP022467.1_1017370_1018075_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP022467.1_1018074_1018992_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP022467.1_1018994_1019288_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP022467.1_1021367_1022414_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP022467.1_1022665_1023574_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP022467.1_1023583_1025023_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP022467.1_1025009_1025615_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP022467.1_1025665_1025989_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP022467.1_1026179_1026491_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP022467.1_1026509_1027220_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP022467.1_1027219_1027699_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP022467.1_1027695_1028745_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP022467.1_1028725_1029487_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002234475.1_ASM223447v1	NZ_CP022467	Salmonella enterica subsp. salamae serovar 57:z29:z42 strain ST114 chromosome, complete genome	3	2147515-2149863	2,3,3,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG,GTGTTCCCCGCGAGAGCGGGGATAAACCG	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	36,38,38,36	38	Orphan	cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|77aa|up_9|NZ_CP022467.1_2132785_2133016_+	PRK09582, chaB, putative cation transport regulator ChaB	NA|230aa|up_8|NZ_CP022467.1_2133214_2133904_+	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]	NA|118aa|up_7|NZ_CP022467.1_2133930_2134284_-	COG1553, DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]	NA|461aa|up_6|NZ_CP022467.1_2134502_2135885_+	PRK10177, PRK10177, YchO/YchP family invasin	NA|217aa|up_5|NZ_CP022467.1_2135885_2136536_-	PRK10651, PRK10651, transcriptional regulator NarL; Provisional	NA|599aa|up_4|NZ_CP022467.1_2136528_2138325_-	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX	NA|1248aa|up_3|NZ_CP022467.1_2140446_2144190_+	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit	NA|512aa|up_2|NZ_CP022467.1_2144186_2145722_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|237aa|up_1|NZ_CP022467.1_2145718_2146429_+	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone	NA|226aa|up_0|NZ_CP022467.1_2146428_2147106_+	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain	NA|281aa|down_0|NZ_CP022467.1_2151128_2151971_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|153aa|down_1|NZ_CP022467.1_2152021_2152480_-	PRK01617, PRK01617, hypothetical protein; Provisional	NA|302aa|down_2|NZ_CP022467.1_2152590_2153496_+	PRK10279, PRK10279, patatin-like phospholipase RssA	NA|338aa|down_3|NZ_CP022467.1_2153586_2154600_+	PRK10693, PRK10693, two-component system response regulator RssB	NA|303aa|down_4|NZ_CP022467.1_2154802_2155711_+	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU	NA|138aa|down_5|NZ_CP022467.1_2155842_2156256_-	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS	NA|206aa|down_6|NZ_CP022467.1_2156918_2157536_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|893aa|down_7|NZ_CP022467.1_2157732_2160411_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|216aa|down_8|NZ_CP022467.1_2160887_2161535_+	PRK11111, PRK11111, YchE family NAAT transporter	NA|544aa|down_9|NZ_CP022467.1_2162300_2163932_+	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional
