The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022524	Clostridioides difficile strain DH/NAP11/106/ST-42 chromosome, complete genome	4087127	284072	302189	4087127	transposase	Synechococcus_phage(21.43%)	15	NA	NA
WP_003435056.1|284072_284471_+|transposase	IS200/IS605 family transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
WP_003436071.1|286012_286525_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	7.8e-84
WP_003425290.1|286974_287451_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|287456_288155_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|288166_289534_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003425286.1|289527_290604_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003436064.1|290597_291191_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_003436063.1|291183_292716_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_003436062.1|292726_293977_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_021368880.1|294001_297808_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.5	1.0e-31
WP_003436060.1|298013_298886_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	1.7e-14
WP_003436059.1|298994_299864_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	61.1	8.1e-97
WP_003436058.1|299912_300470_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	1.3e-47
WP_021358779.1|300507_301491_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.0	1.1e-78
WP_009895321.1|301520_302189_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	46.9	4.1e-24
>prophage 2
NZ_CP022524	Clostridioides difficile strain DH/NAP11/106/ST-42 chromosome, complete genome	4087127	1394163	1465111	4087127	protease,integrase,tail,plate,portal,tRNA	Clostridium_phage(42.86%)	69	1393716:1393734	1466588:1466606
1393716:1393734	attL	TGAAATGGCAAAAAATTTA	NA	NA	NA	NA
WP_003428232.1|1394163_1395069_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003438310.1|1395199_1396129_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_011861174.1|1396128_1396227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003419491.1|1396232_1396490_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_009889099.1|1396729_1397575_+	DegV family protein	NA	NA	NA	NA	NA
WP_003438316.1|1397699_1399811_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003438319.1|1400076_1400820_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003438321.1|1400977_1402225_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	35.1	5.1e-52
WP_003419503.1|1402259_1402505_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_003438324.1|1402514_1403738_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003428224.1|1403850_1404585_+|protease	Clp protease	protease	NA	NA	NA	NA
WP_003438328.1|1404707_1407119_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_003438330.1|1407121_1408180_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_003438333.1|1408173_1409508_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_021370268.1|1409494_1410037_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003428218.1|1410324_1411371_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
WP_003428216.1|1411546_1413088_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438341.1|1413401_1415738_+	diguanylate cyclase	NA	G3MA91	Bacillus_virus	30.6	2.0e-17
WP_003438344.1|1416119_1417901_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_009902411.1|1417982_1418513_-	signal peptidase I	NA	NA	NA	NA	NA
WP_003438350.1|1418552_1419377_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1419633_1420542_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003438353.1|1420685_1422131_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1422441_1422894_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003438357.1|1423228_1424425_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_003438360.1|1424809_1425760_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1425920_1426673_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_003438370.1|1426764_1427541_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1427855_1429754_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003438374.1|1429881_1431003_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_009889116.1|1431201_1431534_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003438377.1|1431520_1432579_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_003438380.1|1432571_1433642_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1433743_1434280_+	lipoprotein	NA	NA	NA	NA	NA
WP_016729592.1|1434395_1435103_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.9	4.3e-56
WP_003438387.1|1435104_1435821_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_021363441.1|1435822_1436581_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_021368953.1|1436715_1438104_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_003438396.1|1438179_1439001_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_009902426.1|1439251_1440406_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1440588_1440789_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1441209_1441638_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1441780_1442536_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_003438404.1|1442656_1443073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003428186.1|1443236_1443743_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_003428185.1|1443824_1444145_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003419641.1|1444313_1444511_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003428183.1|1444615_1445056_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
WP_003438413.1|1445304_1445748_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	35.4	3.8e-18
WP_003438414.1|1445752_1446817_+|portal	phage portal protein	portal	A0A1V0DZX4	Clostridioides_phage	52.8	7.6e-97
WP_003419646.1|1446830_1447259_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_003419647.1|1447372_1447819_+|portal	phage portal protein	portal	A0A090EUD0	Clostridium_phage	36.0	8.2e-13
WP_003419648.1|1447845_1448013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003438437.1|1448012_1450466_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	55.7	6.1e-17
WP_003428168.1|1450465_1450888_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
WP_003438440.1|1451169_1452699_+	cell wall XkdQ hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	2.2e-243
WP_003438447.1|1452714_1453041_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003438449.1|1453040_1453469_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	4.4e-64
WP_003438450.1|1453461_1454514_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.0	2.7e-139
WP_003438451.1|1454510_1455209_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
WP_003438452.1|1455209_1456193_+|tail	tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	47.8	6.4e-58
WP_003438453.1|1456209_1461531_+	hypothetical protein	NA	A0A0A8WEY5	Clostridium_phage	37.4	7.8e-118
WP_003438464.1|1461547_1461901_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	1.6e-11
WP_003438465.1|1462163_1462424_+	hypothetical protein	NA	A0A0A8WE78	Clostridium_phage	91.6	6.4e-34
WP_003419674.1|1462644_1463100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1463327_1463747_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1464045_1464255_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_003428145.1|1464274_1464496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003428144.1|1464712_1465111_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
1466588:1466606	attR	TAAATTTTTTGCCATTTCA	NA	NA	NA	NA
>prophage 3
NZ_CP022524	Clostridioides difficile strain DH/NAP11/106/ST-42 chromosome, complete genome	4087127	1546533	1556260	4087127		Pandoravirus(37.5%)	11	NA	NA
WP_003438628.1|1546533_1547118_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	1.1e-57
WP_074033692.1|1547110_1548469_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.3e-37
WP_003438634.1|1548458_1549202_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_003438637.1|1549235_1549937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1549962_1550535_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_011861218.1|1550586_1551390_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	28.8	1.4e-23
WP_009889257.1|1551400_1551766_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_003438641.1|1551758_1552265_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	35.2	1.2e-12
WP_003419887.1|1552245_1553031_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
WP_009896376.1|1553285_1555076_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
WP_011861220.1|1555087_1556260_+	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	36.8	9.7e-37
>prophage 4
NZ_CP022524	Clostridioides difficile strain DH/NAP11/106/ST-42 chromosome, complete genome	4087127	1759653	1769889	4087127	protease,transposase	Clostridium_phage(33.33%)	8	NA	NA
WP_003436426.1|1759653_1761528_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2P1ELF7	Moumouvirus	30.1	4.7e-25
WP_003436430.1|1761619_1763056_-|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_003435056.1|1763311_1763710_+|transposase	IS200/IS605 family transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
WP_016729235.1|1763706_1764870_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0A8WI33	Clostridium_phage	98.7	5.0e-219
WP_003420269.1|1765229_1765808_+	TerD family protein	NA	A0A0S4KZ16	Pseudomonas_phage	36.9	2.1e-16
WP_004454531.1|1765846_1766425_+	TerD family protein	NA	NA	NA	NA	NA
WP_003430074.1|1766510_1767140_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	33.8	1.1e-26
WP_004454529.1|1767129_1769889_+	calcium-translocating P-type ATPase, PMCA-type	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	29.6	1.1e-91
>prophage 5
NZ_CP022524	Clostridioides difficile strain DH/NAP11/106/ST-42 chromosome, complete genome	4087127	2441877	2459982	4087127		Streptococcus_phage(81.82%)	16	NA	NA
WP_021378256.1|2441877_2444445_-	pyruvate phosphate dikinase PEP/pyruvate-binding domain protein	NA	A0A1V0SGR7	Hokovirus	38.9	1.6e-47
WP_021369143.1|2444441_2445053_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021378259.1|2445196_2446099_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	51.2	3.2e-80
WP_021369027.1|2446118_2447123_-	C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	69.3	4.0e-132
WP_021369033.1|2447119_2449315_-	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	60.6	1.5e-184
WP_009902335.1|2449314_2451765_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.3	0.0e+00
WP_011861948.1|2451742_2452141_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	2.4e-48
WP_009902330.1|2452261_2452765_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.6	4.9e-54
WP_009902328.1|2452782_2453286_-	antirestriction protein	NA	NA	NA	NA	NA
WP_022621734.1|2453204_2453501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074081537.1|2453607_2453988_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003436839.1|2454065_2454227_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.0	4.4e-17
WP_003436850.1|2454393_2456304_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.4	6.4e-38
WP_003436853.1|2457045_2457180_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_003436855.1|2457186_2458308_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.3	4.0e-133
WP_021369030.1|2458587_2459982_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	65.3	2.6e-174
>prophage 6
NZ_CP022524	Clostridioides difficile strain DH/NAP11/106/ST-42 chromosome, complete genome	4087127	3082585	3091538	4087127		Catovirus(50.0%)	8	NA	NA
WP_009897930.1|3082585_3084499_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
WP_003431768.1|3084582_3085674_-	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_011861675.1|3085679_3086975_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	2.9e-90
WP_003426498.1|3087000_3087753_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_004454111.1|3087800_3088709_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003422862.1|3088730_3089480_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_004454110.1|3089508_3090699_-	glycerophosphotransferase	NA	NA	NA	NA	NA
WP_009897935.1|3090698_3091538_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
