assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002224585.1_ASM222458v1	NZ_CP022427	Pantoea ananatis strain YJ76 chromosome, complete genome	1	261596-261687	1	CRISPRCasFinder	no		cas3,DEDDh,PD-DExK,DinG,csa3	Orphan	GCCGTTCGCCGTGATGTTGCTGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PD-DExK,DinG,csa3	NA|131aa|up_9|NZ_CP022427.1_253305_253698_-,NA|153aa|up_6|NZ_CP022427.1_256708_257167_-,NA|66aa|up_0|NZ_CP022427.1_260700_260898_+,NA|228aa|down_0|NZ_CP022427.1_262392_263076_-	NA|131aa|up_9|NZ_CP022427.1_253305_253698_-	NA	NA|254aa|up_8|NZ_CP022427.1_253842_254604_-	TIGR03747, conj_TIGR03747, integrating conjugative element membrane protein, PFL_4697 family	NA|705aa|up_7|NZ_CP022427.1_254590_256705_-	TIGR03754, conj_TOL_TraD, conjugative coupling factor TraD, TOL family	NA|153aa|up_6|NZ_CP022427.1_256708_257167_-	NA	NA|211aa|up_5|NZ_CP022427.1_257178_257811_-	pfam04471, Mrr_cat, Restriction endonuclease	NA|177aa|up_4|NZ_CP022427.1_257810_258341_-	pfam11072, DUF2859, Protein of unknown function (DUF2859)	NA|206aa|up_3|NZ_CP022427.1_258337_258955_-	cd16892, LT_VirB1-like, VirB1-like subfamily	NA|238aa|up_2|NZ_CP022427.1_258933_259647_-	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family	NA|230aa|up_1|NZ_CP022427.1_259658_260348_-	PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional	NA|66aa|up_0|NZ_CP022427.1_260700_260898_+	NA	NA|228aa|down_0|NZ_CP022427.1_262392_263076_-	NA	NA|162aa|down_1|NZ_CP022427.1_263072_263558_-	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|197aa|down_2|NZ_CP022427.1_263562_264153_-	pfam08805, PilS, PilS N terminal	NA|372aa|down_3|NZ_CP022427.1_264162_265278_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|521aa|down_4|NZ_CP022427.1_265267_266830_-	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|168aa|down_5|NZ_CP022427.1_266837_267341_-	TIGR03021, pilP_fam, type IV pilus biogenesis protein PilP	NA|428aa|down_6|NZ_CP022427.1_267327_268611_-	pfam06864, PAP_PilO, Pilin accessory protein (PilO)	NA|558aa|down_7|NZ_CP022427.1_268613_270287_-	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family	NA|148aa|down_8|NZ_CP022427.1_270297_270741_-	pfam07419, PilM, PilM	NA|432aa|down_9|NZ_CP022427.1_270742_272038_-	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family
GCF_002224585.1_ASM222458v1	NZ_CP022427	Pantoea ananatis strain YJ76 chromosome, complete genome	2	279177-279271	2	CRISPRCasFinder	no		cas3,DEDDh,PD-DExK,DinG,csa3	Orphan	TATTATTTGACCGCTGTTGCGCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PD-DExK,DinG,csa3	NA,NA|77aa|down_1|NZ_CP022427.1_280685_280916_-,NA|103aa|down_8|NZ_CP022427.1_286942_287251_+,NA|203aa|down_9|NZ_CP022427.1_287424_288033_-	NA|558aa|up_9|NZ_CP022427.1_268613_270287_-	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family	NA|148aa|up_8|NZ_CP022427.1_270297_270741_-	pfam07419, PilM, PilM	NA|432aa|up_7|NZ_CP022427.1_270742_272038_-	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|382aa|up_6|NZ_CP022427.1_272426_273572_-	pfam11185, DUF2971, Protein of unknown function (DUF2971)	NA|83aa|up_5|NZ_CP022427.1_273947_274196_-	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|81aa|up_4|NZ_CP022427.1_274179_274422_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|185aa|up_3|NZ_CP022427.1_274512_275067_-	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|170aa|up_2|NZ_CP022427.1_275142_275652_-	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|673aa|up_1|NZ_CP022427.1_276283_278302_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|242aa|up_0|NZ_CP022427.1_278313_279039_-	TIGR03761, ICE_PFL4669, integrating conjugative element protein, PFL_4669 family	NA|415aa|down_0|NZ_CP022427.1_279362_280607_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|77aa|down_1|NZ_CP022427.1_280685_280916_-	NA	NA|199aa|down_2|NZ_CP022427.1_280915_281512_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|248aa|down_3|NZ_CP022427.1_281596_282340_-	pfam10979, DUF2786, Protein of unknown function (DUF2786)	NA|86aa|down_4|NZ_CP022427.1_282329_282587_-	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms]	NA|571aa|down_5|NZ_CP022427.1_282579_284292_-	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|455aa|down_6|NZ_CP022427.1_284288_285653_-	TIGR00665, DnaB, replicative DNA helicase	NA|296aa|down_7|NZ_CP022427.1_285645_286533_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|103aa|down_8|NZ_CP022427.1_286942_287251_+	NA	NA|203aa|down_9|NZ_CP022427.1_287424_288033_-	NA
GCF_002224585.1_ASM222458v1	NZ_CP022427	Pantoea ananatis strain YJ76 chromosome, complete genome	3	2951036-2951175	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,PD-DExK,DinG,csa3	Unclear	TGCCAGCACGTTCTGCACTTAACTGGCAAAGCGTATCTGAC	41	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,PD-DExK,DinG,csa3	NA,NA|107aa|down_1|NZ_CP022427.1_2951916_2952237_-,NA|60aa|down_9|NZ_CP022427.1_2958914_2959094_+	NA|304aa|up_9|NZ_CP022427.1_2943558_2944470_+	PRK00321, rdgC, recombination associated protein; Reviewed	NA|97aa|up_8|NZ_CP022427.1_2944505_2944796_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|64aa|up_7|NZ_CP022427.1_2944948_2945140_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|up_6|NZ_CP022427.1_2945251_2945776_-	PRK03731, aroL, shikimate kinase AroL	NA|240aa|up_5|NZ_CP022427.1_2946058_2946778_+	pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)	NA|150aa|up_4|NZ_CP022427.1_2946779_2947229_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|271aa|up_3|NZ_CP022427.1_2947525_2948338_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|511aa|up_2|NZ_CP022427.1_2948387_2949920_-	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase	NA|101aa|up_1|NZ_CP022427.1_2950142_2950445_-	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF	NA|85aa|up_0|NZ_CP022427.1_2950564_2950819_-	PRK10244, PRK10244, anti-adapter protein IraP	NA|84aa|down_0|NZ_CP022427.1_2951652_2951904_+	pfam10798, YmgB, Biofilm development protein YmgB/AriR	NA|107aa|down_1|NZ_CP022427.1_2951916_2952237_-	NA	NA|99aa|down_2|NZ_CP022427.1_2952445_2952742_-	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family	NA|216aa|down_3|NZ_CP022427.1_2953262_2953910_+	pfam02517, Abi, CAAX protease self-immunity	NA|343aa|down_4|NZ_CP022427.1_2953989_2955018_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|477aa|down_5|NZ_CP022427.1_2955043_2956474_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|105aa|down_6|NZ_CP022427.1_2956487_2956802_-	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|435aa|down_7|NZ_CP022427.1_2956805_2958110_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|103aa|down_8|NZ_CP022427.1_2958194_2958503_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|60aa|down_9|NZ_CP022427.1_2958914_2959094_+	NA
GCF_002224585.1_ASM222458v1	NZ_CP022427	Pantoea ananatis strain YJ76 chromosome, complete genome	4	3367563-3368785	4	CRISPRCasFinder	no		cas3,DEDDh,PD-DExK,DinG,csa3	Orphan	GTCTGGGTACTGCCGTAACCGGC	23	5	5	3367586-3367610|3367634-3367658|3368114-3368138|3368402-3368426|3368690-3368714	NZ_CP022427.1_3367154-3367178|NZ_CP022427.1_3367202-3367226|NZ_CP022427.1_3366242-3366266|NZ_CP022427.1_3366242-3366266|NZ_CP022427.1_3366242-3366266	NA	25	25	Orphan	cas3,DEDDh,PD-DExK,DinG,csa3	NA,NA|320aa|down_1|NZ_CP022427.1_3373509_3374469_+,NA|199aa|down_2|NZ_CP022427.1_3374478_3375075_+,NA|830aa|down_6|NZ_CP022427.1_3378688_3381178_+	NA|149aa|up_9|NZ_CP022427.1_3355028_3355475_+	pfam07798, DUF1640, Protein of unknown function (DUF1640)	NA|237aa|up_8|NZ_CP022427.1_3355497_3356208_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|169aa|up_7|NZ_CP022427.1_3356351_3356858_-	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|381aa|up_6|NZ_CP022427.1_3356989_3358132_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|223aa|up_5|NZ_CP022427.1_3358603_3359272_+	PRK10396, PRK10396, hypothetical protein; Provisional	NA|237aa|up_4|NZ_CP022427.1_3359548_3360259_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|466aa|up_3|NZ_CP022427.1_3360358_3361756_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|344aa|up_2|NZ_CP022427.1_3361898_3362930_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|256aa|up_1|NZ_CP022427.1_3362971_3363739_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|418aa|up_0|NZ_CP022427.1_3364063_3365317_+	cd03322, RspA, The starvation sensing protein RspA from E	NA|446aa|down_0|NZ_CP022427.1_3369918_3371256_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|320aa|down_1|NZ_CP022427.1_3373509_3374469_+	NA	NA|199aa|down_2|NZ_CP022427.1_3374478_3375075_+	NA	NA|279aa|down_3|NZ_CP022427.1_3375495_3376332_+	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional	NA|254aa|down_4|NZ_CP022427.1_3376387_3377149_+	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|360aa|down_5|NZ_CP022427.1_3377579_3378659_+	COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]	NA|830aa|down_6|NZ_CP022427.1_3378688_3381178_+	NA	NA|447aa|down_7|NZ_CP022427.1_3381333_3382674_-	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]	NA|455aa|down_8|NZ_CP022427.1_3382737_3384102_-	TIGR00908, putative_ethanolamine_permease, ethanolamine permease	NA|347aa|down_9|NZ_CP022427.1_3384308_3385349_+	COG2334, COG2334, Putative homoserine kinase type II (protein kinase fold) [General function prediction only]
GCF_002224585.1_ASM222458v1	NZ_CP022427	Pantoea ananatis strain YJ76 chromosome, complete genome	5	3525441-3525528	5	CRISPRCasFinder	no		cas3,DEDDh,PD-DExK,DinG,csa3	Orphan	CACCTGCGGCGCGAAGGACGCCCGCTTATT	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PD-DExK,DinG,csa3	NA|62aa|up_1|NZ_CP022427.1_3524734_3524920_-,NA|62aa|up_0|NZ_CP022427.1_3524991_3525177_-,NA	NA|717aa|up_9|NZ_CP022427.1_3507403_3509554_-	PRK08043, PRK08043, bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase	NA|462aa|up_8|NZ_CP022427.1_3509650_3511036_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|1034aa|up_7|NZ_CP022427.1_3511039_3514141_-	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional	NA|1068aa|up_6|NZ_CP022427.1_3514137_3517341_-	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|425aa|up_5|NZ_CP022427.1_3517337_3518612_-	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|580aa|up_4|NZ_CP022427.1_3518966_3520706_-	PRK15105, PRK15105, peptidoglycan synthase FtsI; Provisional	NA|758aa|up_3|NZ_CP022427.1_3520982_3523256_-	cd02769, MopB_DMSOR-BSOR-TMAOR, The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins	NA|337aa|up_2|NZ_CP022427.1_3523443_3524454_+	PRK10727, PRK10727, HTH-type transcriptional regulator GalR	NA|62aa|up_1|NZ_CP022427.1_3524734_3524920_-	NA	NA|62aa|up_0|NZ_CP022427.1_3524991_3525177_-	NA	NA|713aa|down_0|NZ_CP022427.1_3528150_3530289_+	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|156aa|down_1|NZ_CP022427.1_3530285_3530753_+	PRK11121, nrdG, anaerobic ribonucleoside-triphosphate reductase-activating protein	NA|212aa|down_2|NZ_CP022427.1_3530744_3531380_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|174aa|down_3|NZ_CP022427.1_3531526_3532048_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|143aa|down_4|NZ_CP022427.1_3532087_3532516_-	PRK03467, PRK03467, hypothetical protein; Provisional	NA|96aa|down_5|NZ_CP022427.1_3532598_3532886_+	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|169aa|down_6|NZ_CP022427.1_3532869_3533376_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|192aa|down_7|NZ_CP022427.1_3533369_3533945_-	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|332aa|down_8|NZ_CP022427.1_3534099_3535095_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|295aa|down_9|NZ_CP022427.1_3535104_3535989_+	PRK15447, PRK15447, putative protease; Provisional
GCF_002224585.1_ASM222458v1	NZ_CP022431	Pantoea ananatis strain YJ76 plasmid p_unamed2 sequence	1	63215-63367	1	CRISPRCasFinder	no			Orphan	GTAGTGCCGGATTAACACACATA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,PD-DExK,DinG,csa3	NA|130aa|up_9|NZ_CP022431.1_55676_56066_+,NA|107aa|up_8|NZ_CP022431.1_56211_56532_+,NA|49aa|up_7|NZ_CP022431.1_56626_56773_+,NA|315aa|up_5|NZ_CP022431.1_58371_59316_+,NA|50aa|up_4|NZ_CP022431.1_59405_59555_+,NA|99aa|up_3|NZ_CP022431.1_59821_60118_+,NA|108aa|up_2|NZ_CP022431.1_60174_60498_+,NA|111aa|up_1|NZ_CP022431.1_61222_61555_+,NA|198aa|down_1|NZ_CP022431.1_64530_65124_-,NA|122aa|down_8|NZ_CP022431.1_69434_69800_+,NA|225aa|down_9|NZ_CP022431.1_69877_70552_+	NA|130aa|up_9|NZ_CP022431.1_55676_56066_+	NA	NA|107aa|up_8|NZ_CP022431.1_56211_56532_+	NA	NA|49aa|up_7|NZ_CP022431.1_56626_56773_+	NA	NA|277aa|up_6|NZ_CP022431.1_56821_57652_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|315aa|up_5|NZ_CP022431.1_58371_59316_+	NA	NA|50aa|up_4|NZ_CP022431.1_59405_59555_+	NA	NA|99aa|up_3|NZ_CP022431.1_59821_60118_+	NA	NA|108aa|up_2|NZ_CP022431.1_60174_60498_+	NA	NA|111aa|up_1|NZ_CP022431.1_61222_61555_+	NA	NA|186aa|up_0|NZ_CP022431.1_61547_62105_+	PRK00024, PRK00024, DNA repair protein RadC	NA|130aa|down_0|NZ_CP022431.1_63614_64004_+	cd14804, Tra_M, TraM mediates signalling between transferosome and relaxosome	NA|198aa|down_1|NZ_CP022431.1_64530_65124_-	NA	NA|142aa|down_2|NZ_CP022431.1_65335_65761_+	TIGR02758, putative_conjugative_transfer_protein_TraA, type IV conjugative transfer system pilin TraA	NA|102aa|down_3|NZ_CP022431.1_65764_66070_+	PRK13707, PRK13707, type IV conjugative transfer system protein TraL	NA|220aa|down_4|NZ_CP022431.1_66120_66780_+	pfam05309, TraE, TraE protein	NA|244aa|down_5|NZ_CP022431.1_66776_67508_+	PRK13736, PRK13736, conjugal transfer protein TraK; Provisional	NA|464aa|down_6|NZ_CP022431.1_67504_68896_+	PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional	NA|177aa|down_7|NZ_CP022431.1_68907_69438_+	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|122aa|down_8|NZ_CP022431.1_69434_69800_+	NA	NA|225aa|down_9|NZ_CP022431.1_69877_70552_+	NA
