assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002224545.1_ASM222454v1	NZ_CP013006	Xanthomonas citri pv. malvacearum strain XcmN1003 chromosome, complete genome	1	42450-42748	1,1	PILER-CR,CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	TGGAAACGGTCAACGGC,TGGAAACGGTCAATGGCAGCATC	17,23	0	0	NA	NA	NA:NA	3,5	5	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA,NA|179aa|down_6|NZ_CP013006.1_52233_52770_+,NA|361aa|down_7|NZ_CP013006.1_52796_53879_+	NA|407aa|up_9|NZ_CP013006.1_26834_28054_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|404aa|up_8|NZ_CP013006.1_29211_30423_-	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms]	NA|363aa|up_7|NZ_CP013006.1_31303_32391_-	pfam00665, rve, Integrase core domain	NA|162aa|up_6|NZ_CP013006.1_33332_33818_+	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|150aa|up_5|NZ_CP013006.1_33818_34268_+	pfam08808, RES, RES domain	NA|489aa|up_4|NZ_CP013006.1_34291_35758_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|231aa|up_3|NZ_CP013006.1_37087_37780_+	pfam01694, Rhomboid, Rhomboid family	NA|107aa|up_2|NZ_CP013006.1_37888_38209_+	pfam08850, DUF1820, Domain of unknown function (DUF1820)	NA|509aa|up_1|NZ_CP013006.1_39301_40828_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|433aa|up_0|NZ_CP013006.1_40932_42231_-	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|599aa|down_0|NZ_CP013006.1_43162_44959_+	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|148aa|down_1|NZ_CP013006.1_45270_45714_-	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|378aa|down_2|NZ_CP013006.1_46008_47142_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|351aa|down_3|NZ_CP013006.1_47780_48833_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|358aa|down_4|NZ_CP013006.1_49600_50674_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|353aa|down_5|NZ_CP013006.1_50981_52040_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|179aa|down_6|NZ_CP013006.1_52233_52770_+	NA	NA|361aa|down_7|NZ_CP013006.1_52796_53879_+	NA	NA|494aa|down_8|NZ_CP013006.1_53891_55373_-	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial	NA|1491aa|down_9|NZ_CP013006.1_55504_59977_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional
GCF_002224545.1_ASM222454v1	NZ_CP013006	Xanthomonas citri pv. malvacearum strain XcmN1003 chromosome, complete genome	2	313125-313207	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	GGTCTCCAACAGCGGCACCATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA|183aa|up_8|NZ_CP013006.1_296604_297153_+,NA|154aa|up_1|NZ_CP013006.1_310463_310925_+,NA|190aa|down_4|NZ_CP013006.1_326364_326934_-,NA|239aa|down_5|NZ_CP013006.1_326930_327647_-	NA|656aa|up_9|NZ_CP013006.1_294640_296608_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|183aa|up_8|NZ_CP013006.1_296604_297153_+	NA	NA|439aa|up_7|NZ_CP013006.1_297439_298756_+	TIGR03354, VI_FHA, type VI secretion system FHA domain protein	NA|445aa|up_6|NZ_CP013006.1_299335_300670_+	TIGR03353, VI_chp_4, type VI secretion protein, VC_A0114 family	NA|427aa|up_5|NZ_CP013006.1_300651_301932_+	PRK07033, PRK07033, DotU family type VI secretion system protein	NA|192aa|up_4|NZ_CP013006.1_305460_306036_+	TIGR03373, VI_minor_4, type VI secretion-associated protein, BMA_A0400 family	NA|239aa|up_3|NZ_CP013006.1_306032_306749_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|1238aa|up_2|NZ_CP013006.1_306753_310467_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|154aa|up_1|NZ_CP013006.1_310463_310925_+	NA	NA|559aa|up_0|NZ_CP013006.1_310921_312598_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|348aa|down_0|NZ_CP013006.1_319786_320830_+	TIGR03363, VI_chp_8, type VI secretion-associated protein, ImpA family	NA|97aa|down_1|NZ_CP013006.1_321139_321430_-	pfam11191, DUF2782, Protein of unknown function (DUF2782)	NA|935aa|down_2|NZ_CP013006.1_321506_324311_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|300aa|down_3|NZ_CP013006.1_325181_326081_-	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|190aa|down_4|NZ_CP013006.1_326364_326934_-	NA	NA|239aa|down_5|NZ_CP013006.1_326930_327647_-	NA	NA|790aa|down_6|NZ_CP013006.1_328040_330410_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|448aa|down_7|NZ_CP013006.1_330987_332331_+	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	NA|336aa|down_8|NZ_CP013006.1_332923_333931_-	TIGR04444, hypothetical_protein_ThecoDRAFT_3161, chorismatase, FkbO/Hyg5 family	NA|450aa|down_9|NZ_CP013006.1_333927_335277_-	NF033113, halo_ClmS, chloramphenicol-biosynthetic FADH2-dependent halogenase CmlS
GCF_002224545.1_ASM222454v1	NZ_CP013006	Xanthomonas citri pv. malvacearum strain XcmN1003 chromosome, complete genome	3	2187203-2187297	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	GGGTCGGCATCCATTTCTGCCAG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA|76aa|up_5|NZ_CP013006.1_2180115_2180343_+,NA|178aa|up_4|NZ_CP013006.1_2180409_2180943_-,NA|265aa|down_8|NZ_CP013006.1_2200408_2201203_+,NA|335aa|down_9|NZ_CP013006.1_2201147_2202152_+	NA|791aa|up_9|NZ_CP013006.1_2171395_2173768_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|254aa|up_8|NZ_CP013006.1_2173781_2174543_-	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation	NA|930aa|up_7|NZ_CP013006.1_2174840_2177630_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|726aa|up_6|NZ_CP013006.1_2177701_2179879_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|76aa|up_5|NZ_CP013006.1_2180115_2180343_+	NA	NA|178aa|up_4|NZ_CP013006.1_2180409_2180943_-	NA	NA|764aa|up_3|NZ_CP013006.1_2181261_2183553_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|669aa|up_2|NZ_CP013006.1_2183791_2185798_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|122aa|up_1|NZ_CP013006.1_2185831_2186197_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|103aa|up_0|NZ_CP013006.1_2186193_2186502_-	pfam13466, STAS_2, STAS domain	NA|261aa|down_0|NZ_CP013006.1_2187875_2188658_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|325aa|down_1|NZ_CP013006.1_2188659_2189634_-	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed	NA|247aa|down_2|NZ_CP013006.1_2189640_2190381_-	PRK09109, motC, flagellar motor protein; Reviewed	NA|1052aa|down_3|NZ_CP013006.1_2191585_2194741_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|364aa|down_4|NZ_CP013006.1_2195441_2196533_+	pfam13614, AAA_31, AAA domain	NA|210aa|down_5|NZ_CP013006.1_2196655_2197285_+	pfam13643, DUF4145, Domain of unknown function (DUF4145)	NA|363aa|down_6|NZ_CP013006.1_2198428_2199516_+	pfam00665, rve, Integrase core domain	NA|233aa|down_7|NZ_CP013006.1_2199717_2200416_+	pfam14022, DUF4238, Protein of unknown function (DUF4238)	NA|265aa|down_8|NZ_CP013006.1_2200408_2201203_+	NA	NA|335aa|down_9|NZ_CP013006.1_2201147_2202152_+	NA
GCF_002224545.1_ASM222454v1	NZ_CP013006	Xanthomonas citri pv. malvacearum strain XcmN1003 chromosome, complete genome	4	4902826-4903010	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	GTGCAGGTGCGCCCCTCGGCCGAGCA	26	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA,NA|206aa|down_2|NZ_CP013006.1_4905358_4905976_-,NA|249aa|down_3|NZ_CP013006.1_4906078_4906825_-	NA|558aa|up_9|NZ_CP013006.1_4890418_4892092_-	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|215aa|up_8|NZ_CP013006.1_4892088_4892733_-	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|368aa|up_7|NZ_CP013006.1_4892926_4894030_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|53aa|up_6|NZ_CP013006.1_4894615_4894774_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|337aa|up_5|NZ_CP013006.1_4894838_4895849_-	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs	NA|554aa|up_4|NZ_CP013006.1_4896079_4897741_-	PRK09274, PRK09274, peptide synthase; Provisional	NA|128aa|up_3|NZ_CP013006.1_4898063_4898447_+	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|301aa|up_2|NZ_CP013006.1_4898599_4899502_-	PRK00870, PRK00870, haloalkane dehalogenase; Provisional	NA|339aa|up_1|NZ_CP013006.1_4900898_4901915_-	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|107aa|up_0|NZ_CP013006.1_4902016_4902337_-	pfam13698, DUF4156, Domain of unknown function (DUF4156)	NA|159aa|down_0|NZ_CP013006.1_4903211_4903688_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|410aa|down_1|NZ_CP013006.1_4904036_4905266_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|206aa|down_2|NZ_CP013006.1_4905358_4905976_-	NA	NA|249aa|down_3|NZ_CP013006.1_4906078_4906825_-	NA	NA|449aa|down_4|NZ_CP013006.1_4907015_4908362_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|481aa|down_5|NZ_CP013006.1_4908346_4909789_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|570aa|down_6|NZ_CP013006.1_4909838_4911548_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|199aa|down_7|NZ_CP013006.1_4911923_4912520_+	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|342aa|down_8|NZ_CP013006.1_4912984_4914010_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|171aa|down_9|NZ_CP013006.1_4914025_4914538_-	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated
GCF_002224545.1_ASM222454v1	NZ_CP013006	Xanthomonas citri pv. malvacearum strain XcmN1003 chromosome, complete genome	5	5174699-5174774	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	CGCGGCCAGGGCCGCTCCTACAGAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA|144aa|up_9|NZ_CP013006.1_5153172_5153604_+,NA|111aa|up_4|NZ_CP013006.1_5164276_5164609_+,NA|60aa|up_3|NZ_CP013006.1_5166791_5166971_+,NA|185aa|up_1|NZ_CP013006.1_5167692_5168247_+,NA|80aa|down_1|NZ_CP013006.1_5178978_5179218_-,NA|127aa|down_8|NZ_CP013006.1_5183840_5184221_-	NA|144aa|up_9|NZ_CP013006.1_5153172_5153604_+	NA	NA|354aa|up_8|NZ_CP013006.1_5154079_5155141_-	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|407aa|up_7|NZ_CP013006.1_5155363_5156583_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|1216aa|up_6|NZ_CP013006.1_5157030_5160678_-	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase	NA|600aa|up_5|NZ_CP013006.1_5160761_5162561_-	PRK08186, PRK08186, allophanate hydrolase; Provisional	NA|111aa|up_4|NZ_CP013006.1_5164276_5164609_+	NA	NA|60aa|up_3|NZ_CP013006.1_5166791_5166971_+	NA	NA|207aa|up_2|NZ_CP013006.1_5167073_5167694_-	cd02652, nuc_hydro_2, NH_2: A subgroup of nucleoside hydrolases	NA|185aa|up_1|NZ_CP013006.1_5167692_5168247_+	NA	NA|731aa|up_0|NZ_CP013006.1_5169056_5171249_-	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit	NA|1135aa|down_0|NZ_CP013006.1_5175024_5178429_-	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit	NA|80aa|down_1|NZ_CP013006.1_5178978_5179218_-	NA	NA|265aa|down_2|NZ_CP013006.1_5179600_5180395_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|250aa|down_3|NZ_CP013006.1_5180394_5181144_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|182aa|down_4|NZ_CP013006.1_5181155_5181701_+	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|221aa|down_5|NZ_CP013006.1_5181697_5182360_+	pfam05494, MlaC, MlaC protein	NA|97aa|down_6|NZ_CP013006.1_5182349_5182640_+	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only]	NA|352aa|down_7|NZ_CP013006.1_5182650_5183706_+	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane]	NA|127aa|down_8|NZ_CP013006.1_5183840_5184221_-	NA	NA|182aa|down_9|NZ_CP013006.1_5184224_5184770_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate
