The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016629	Listeria monocytogenes strain FORC_049 chromosome, complete genome	2935033	82714	90559	2935033	holin	Listeria_phage(87.5%)	9	NA	NA
WP_031643969.1|82714_83671_+	NAD(P)-binding domain-containing protein	NA	M1H502	Paramecium_bursaria_Chlorella_virus	29.6	4.6e-29
WP_061112480.1|85204_85993_-	hypothetical protein	NA	A0A1S7FYW2	Listeria_phage	67.0	6.1e-35
WP_102135858.1|86047_86215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061112479.1|86341_86818_-	helix-turn-helix transcriptional regulator	NA	A8ASM2	Listeria_phage	83.8	6.2e-59
WP_060579670.1|86952_87174_+	helix-turn-helix transcriptional regulator	NA	A8ASM3	Listeria_phage	95.9	2.5e-31
WP_015987418.1|87208_87445_+	hypothetical protein	NA	A8ATX7	Listeria_phage	100.0	1.1e-37
WP_003733957.1|89127_89433_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	100.0	1.8e-43
WP_061112478.1|89432_89714_+|holin	phage holin	holin	A8ATW3	Listeria_phage	97.8	5.7e-44
WP_061112477.1|89713_90559_+	M15 family metallopeptidase	NA	A0A059T7Y8	Listeria_phage	94.0	1.7e-136
>prophage 2
NZ_CP016629	Listeria monocytogenes strain FORC_049 chromosome, complete genome	2935033	132170	138697	2935033	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003728215.1|132170_132623_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|132628_132964_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003724946.1|133180_133609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003728213.1|133620_134037_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	37.9	3.2e-19
WP_003728212.1|134316_134706_+	DUF5072 family protein	NA	NA	NA	NA	NA
WP_003721744.1|134718_135231_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|135278_135581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003740367.1|135622_136027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731178.1|136013_137882_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_003731179.1|137878_138697_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	5.5e-39
>prophage 3
NZ_CP016629	Listeria monocytogenes strain FORC_049 chromosome, complete genome	2935033	1132225	1161286	2935033	transposase,integrase	Streptococcus_phage(66.67%)	32	1118080:1118094	1143325:1143339
1118080:1118094	attL	ATACTTAAAAATTTC	NA	NA	NA	NA
WP_003727003.1|1132225_1132609_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	8.1e-17
WP_003727002.1|1132630_1133614_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	33.8	2.0e-11
WP_003727001.1|1133628_1134642_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	31.2	1.8e-10
WP_003721509.1|1134850_1136341_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_003727000.1|1136352_1137177_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	9.7e-68
WP_003724634.1|1137189_1137498_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_009917597.1|1137557_1137962_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_012681222.1|1138090_1139647_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
WP_000237798.1|1139714_1140908_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.0	2.4e-43
WP_000633909.1|1140934_1141135_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_000845144.1|1141630_1141861_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	7.9e-28
WP_000804878.1|1141857_1142280_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	70.0	1.0e-49
WP_089180001.1|1142811_1143165_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	89.7	1.4e-52
WP_032506803.1|1143222_1143411_-	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	61.4	7.4e-16
1143325:1143339	attR	GAAATTTTTAAGTAT	NA	NA	NA	NA
WP_000691737.1|1143508_1145428_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.2	0.0e+00
WP_077941411.1|1145443_1145560_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000584387.1|1145804_1146734_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.1e-83
WP_000768374.1|1146750_1147773_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	1.4e-132
WP_000192390.1|1147769_1149797_-	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	65.7	1.8e-195
WP_000941001.1|1149793_1152247_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	79.1	0.0e+00
WP_000723886.1|1152230_1152626_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	75.0	1.7e-49
WP_000234705.1|1152696_1153722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195404.1|1153800_1154967_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	76.0	1.2e-106
WP_000421245.1|1155129_1155630_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	61.1	5.4e-53
WP_000678782.1|1155691_1156471_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_001009054.1|1156512_1156734_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_000055367.1|1156730_1157003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000426691.1|1156999_1158184_-	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	67.6	1.0e-158
WP_001130247.1|1158365_1159769_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	67.2	2.3e-178
WP_000185760.1|1159790_1160564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001234189.1|1160573_1160951_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	77.2	5.6e-47
WP_000421280.1|1160971_1161286_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	76.7	7.0e-43
>prophage 4
NZ_CP016629	Listeria monocytogenes strain FORC_049 chromosome, complete genome	2935033	1306504	1363354	2935033	protease,tRNA	Bacillus_virus(16.67%)	56	NA	NA
WP_031643879.1|1306504_1307644_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1307723_1308119_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1308269_1308485_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003727523.1|1308608_1309142_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003731300.1|1309157_1309823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003727521.1|1310084_1311023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1311137_1312421_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1312605_1313865_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003726393.1|1313983_1314550_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003726394.1|1314584_1315154_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003727520.1|1315255_1315798_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003726396.1|1315807_1316671_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003727519.1|1316667_1317453_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	6.7e-26
WP_003727518.1|1317586_1318447_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003727517.1|1318719_1320798_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	5.4e-107
WP_003726401.1|1320860_1322165_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_023550485.1|1322447_1323350_+	tyrosine recombinase XerC	NA	A0A142K7N4	Mycobacterium_phage	29.5	1.8e-14
WP_003724001.1|1323370_1323910_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003727514.1|1323923_1325333_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	7.5e-44
WP_003726695.1|1325353_1326133_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_003727513.1|1326235_1326655_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003724130.1|1326677_1326989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003726697.1|1326991_1327864_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003726698.1|1327905_1328502_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003731304.1|1328659_1329067_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_003727510.1|1329247_1331215_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	5.1e-123
WP_010958880.1|1331211_1333671_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.8	1.1e-101
WP_003726814.1|1333753_1334221_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_061112335.1|1334847_1336668_+	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_003727507.1|1336700_1338587_-	peptidoglycan O-acetyltransferase OatA	NA	B5WZU0	Pseudomonas_phage	32.2	3.8e-43
WP_003726657.1|1338799_1339498_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	31.9	6.4e-12
WP_003723738.1|1339730_1341407_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_003726658.1|1341533_1342451_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003719566.1|1342572_1342806_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_012681271.1|1342916_1344140_+	GTPase HflX	NA	NA	NA	NA	NA
WP_003727505.1|1344132_1345359_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_003719570.1|1345560_1345929_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723435.1|1345999_1347334_+	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_023550496.1|1347477_1348773_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	62.1	2.2e-146
WP_003734519.1|1348806_1349331_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_009928625.1|1349361_1349976_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_003734518.1|1350131_1350461_+	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003727501.1|1350554_1350782_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_009928628.1|1350928_1352923_+	transketolase	NA	NA	NA	NA	NA
WP_003726667.1|1353143_1353383_+	YneF family protein	NA	NA	NA	NA	NA
WP_003726668.1|1353431_1354163_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	58.0	2.3e-81
WP_003726669.1|1354184_1354691_-	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	1.4e-56
WP_021496023.1|1354700_1356005_-	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	52.3	5.6e-134
WP_012681273.1|1355994_1357200_-	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	46.6	7.0e-91
WP_003727498.1|1357177_1357552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723449.1|1357844_1358573_+	UMP kinase	NA	NA	NA	NA	NA
WP_003723450.1|1358572_1359130_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_089180006.1|1359360_1360119_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.1	5.7e-22
WP_003727496.1|1360132_1360921_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003726414.1|1360935_1362078_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_061112334.1|1362091_1363354_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 5
NZ_CP016629	Listeria monocytogenes strain FORC_049 chromosome, complete genome	2935033	1854443	1862729	2935033		Synechococcus_phage(33.33%)	8	NA	NA
WP_003726209.1|1854443_1855010_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.4	8.3e-26
WP_003726210.1|1855006_1856056_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
WP_003722245.1|1856074_1857502_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_003731570.1|1857486_1859706_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.8	6.5e-159
WP_003726212.1|1859698_1860382_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1860385_1860631_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_031644139.1|1860642_1861356_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	3.9e-41
WP_089180017.1|1861436_1862729_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 6
NZ_CP016629	Listeria monocytogenes strain FORC_049 chromosome, complete genome	2935033	2539456	2547298	2935033		Streptococcus_phage(50.0%)	7	NA	NA
WP_003725407.1|2539456_2540428_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003731212.1|2540435_2541404_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.6	1.8e-68
WP_003722606.1|2541405_2542281_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_003725409.1|2542388_2544119_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.1	9.5e-174
WP_003741152.1|2544160_2545222_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_014929803.1|2545238_2546222_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.4	4.0e-52
WP_003722610.1|2546338_2547298_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
>prophage 7
NZ_CP016629	Listeria monocytogenes strain FORC_049 chromosome, complete genome	2935033	2828875	2838899	2935033		Tupanvirus(33.33%)	6	NA	NA
WP_009917426.1|2828875_2831029_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	33.8	3.3e-43
WP_031644014.1|2831052_2832825_-	DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	37.5	5.7e-81
WP_003722118.1|2832985_2834452_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	8.0e-97
WP_003725312.1|2834739_2835270_-	ADP-ribose-binding protein	NA	A0A0K1L687	Scale_drop_disease_virus	49.3	2.8e-28
WP_003725313.1|2835327_2836938_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.9	6.4e-47
WP_003725314.1|2837444_2838899_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	30.3	1.9e-50
