assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002219285.1_ASM221928v1	NZ_CP015278	Mycobacterium chimaera strain DSM 44623 chromosome, complete genome	1	406362-406450	1	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4	Unclear	CCCTGGGGACCCGGCCCCGGCGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,c2c4_V-U1	NA|141aa|up_8|NZ_CP015278.1_396185_396608_-,NA|491aa|down_7|NZ_CP015278.1_413566_415039_-	NA|204aa|up_9|NZ_CP015278.1_395567_396179_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|141aa|up_8|NZ_CP015278.1_396185_396608_-	NA	NA|236aa|up_7|NZ_CP015278.1_396620_397328_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|410aa|up_6|NZ_CP015278.1_397320_398550_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	DEDDh|331aa|up_5|NZ_CP015278.1_398660_399653_+	PRK06063, PRK06063, DEDDh family exonuclease	NA|640aa|up_4|NZ_CP015278.1_399669_401589_-	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated	NA|422aa|up_3|NZ_CP015278.1_401874_403140_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|353aa|up_2|NZ_CP015278.1_403140_404199_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|334aa|up_1|NZ_CP015278.1_404336_405338_+	pfam13810, DUF4185, Domain of unknown function (DUF4185)	NA|151aa|up_0|NZ_CP015278.1_405432_405885_+	pfam04592, SelP_N, Selenoprotein P, N terminal region	NA|219aa|down_0|NZ_CP015278.1_406602_407259_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|434aa|down_1|NZ_CP015278.1_407438_408740_+	TIGR03444, EgtA_Cys_ligase, ergothioneine biosynthesis glutamate--cysteine ligase EgtA	NA|438aa|down_2|NZ_CP015278.1_408736_410050_+	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|237aa|down_3|NZ_CP015278.1_410049_410760_+	TIGR03442, TIGR03442, ergothioneine biosynthesis protein EgtC	NA|322aa|down_4|NZ_CP015278.1_410759_411725_+	COG4301, COG4301, Uncharacterized conserved protein [Function unknown]	NA|386aa|down_5|NZ_CP015278.1_411721_412879_+	TIGR04343, pyridoxal-phosphate-dependent_transferase, ergothioneine biosynthesis PLP-dependent enzyme EgtE	NA|227aa|down_6|NZ_CP015278.1_412875_413556_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|491aa|down_7|NZ_CP015278.1_413566_415039_-	NA	NA|509aa|down_8|NZ_CP015278.1_415174_416701_+	PRK00047, glpK, glycerol kinase GlpK	NA|240aa|down_9|NZ_CP015278.1_416733_417453_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_002219285.1_ASM221928v1	NZ_CP015278	Mycobacterium chimaera strain DSM 44623 chromosome, complete genome	2	1713310-1713388	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4	Orphan	TCCGCCGCGGAGGTCCGTGGGCGCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,c2c4_V-U1	NA,NA	NA|589aa|up_9|NZ_CP015278.1_1699996_1701763_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|186aa|up_8|NZ_CP015278.1_1701944_1702502_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|177aa|up_7|NZ_CP015278.1_1702510_1703041_+	pfam12079, DUF3558, Protein of unknown function (DUF3558)	NA|168aa|up_6|NZ_CP015278.1_1703135_1703639_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|384aa|up_5|NZ_CP015278.1_1703802_1704954_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|874aa|up_4|NZ_CP015278.1_1704950_1707572_+	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|415aa|up_3|NZ_CP015278.1_1707667_1708912_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|545aa|up_2|NZ_CP015278.1_1708898_1710533_-	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|612aa|up_1|NZ_CP015278.1_1710567_1712403_-	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional	NA|303aa|up_0|NZ_CP015278.1_1712399_1713308_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|326aa|down_0|NZ_CP015278.1_1713430_1714408_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|164aa|down_1|NZ_CP015278.1_1714620_1715112_+	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|147aa|down_2|NZ_CP015278.1_1715190_1715631_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|310aa|down_3|NZ_CP015278.1_1715743_1716673_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|614aa|down_4|NZ_CP015278.1_1716672_1718514_+	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|162aa|down_5|NZ_CP015278.1_1718572_1719058_+	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein	NA|130aa|down_6|NZ_CP015278.1_1719075_1719465_-	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins	NA|138aa|down_7|NZ_CP015278.1_1719508_1719922_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|293aa|down_8|NZ_CP015278.1_1719988_1720867_+	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|289aa|down_9|NZ_CP015278.1_1720936_1721803_+	pfam13424, TPR_12, Tetratricopeptide repeat
GCF_002219285.1_ASM221928v1	NZ_CP015278	Mycobacterium chimaera strain DSM 44623 chromosome, complete genome	3	2641619-2641732	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4	Orphan	GGTGTGATCGCGGCTTCGCCGCTCAACA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,c2c4_V-U1	NA,NA|90aa|down_3|NZ_CP015278.1_2645024_2645294_-,NA|101aa|down_5|NZ_CP015278.1_2646467_2646770_+	NA|494aa|up_9|NZ_CP015278.1_2632714_2634196_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|317aa|up_8|NZ_CP015278.1_2634192_2635143_+	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|386aa|up_7|NZ_CP015278.1_2635409_2636567_+	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|249aa|up_6|NZ_CP015278.1_2636629_2637376_+	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]	NA|259aa|up_5|NZ_CP015278.1_2637381_2638158_+	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]	NA|215aa|up_4|NZ_CP015278.1_2638224_2638869_+	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|97aa|up_3|NZ_CP015278.1_2639034_2639325_+	COG0762, COG0762, Predicted integral membrane protein [Function unknown]	NA|266aa|up_2|NZ_CP015278.1_2639588_2640386_+	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning]	NA|113aa|up_1|NZ_CP015278.1_2640479_2640818_+	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|225aa|up_0|NZ_CP015278.1_2640821_2641496_-	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|452aa|down_0|NZ_CP015278.1_2642002_2643358_+	PRK07906, PRK07906, hypothetical protein; Provisional	NA|177aa|down_1|NZ_CP015278.1_2643394_2643925_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|355aa|down_2|NZ_CP015278.1_2643927_2644992_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|90aa|down_3|NZ_CP015278.1_2645024_2645294_-	NA	NA|341aa|down_4|NZ_CP015278.1_2645290_2646313_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|101aa|down_5|NZ_CP015278.1_2646467_2646770_+	NA	NA|251aa|down_6|NZ_CP015278.1_2646844_2647597_+	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family	NA|196aa|down_7|NZ_CP015278.1_2647658_2648246_+	TIGR03847, TIGR03847, conserved hypothetical protein	NA|263aa|down_8|NZ_CP015278.1_2648256_2649045_+	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein	NA|256aa|down_9|NZ_CP015278.1_2649120_2649888_+	COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism]
GCF_002219285.1_ASM221928v1	NZ_CP015278	Mycobacterium chimaera strain DSM 44623 chromosome, complete genome	4	4117916-4118012	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4	Orphan	TGCCCGGCGTCGGCTGTGGCTCCGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,c2c4_V-U1	NA,NA|153aa|down_4|NZ_CP015278.1_4124118_4124577_-	NA|301aa|up_9|NZ_CP015278.1_4108422_4109325_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|251aa|up_8|NZ_CP015278.1_4109454_4110207_-	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed	NA|404aa|up_7|NZ_CP015278.1_4110256_4111468_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|245aa|up_6|NZ_CP015278.1_4111520_4112255_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|162aa|up_5|NZ_CP015278.1_4112354_4112840_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|267aa|up_4|NZ_CP015278.1_4112911_4113712_-	PRK01827, thyA, thymidylate synthase; Reviewed	NA|250aa|up_3|NZ_CP015278.1_4113754_4114504_+	pfam01738, DLH, Dienelactone hydrolase family	NA|371aa|up_2|NZ_CP015278.1_4114520_4115633_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|400aa|up_1|NZ_CP015278.1_4115629_4116829_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|261aa|up_0|NZ_CP015278.1_4116825_4117608_-	PRK07231, FabG-like, SDR family oxidoreductase	NA|1079aa|down_0|NZ_CP015278.1_4118035_4121272_-	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	NA|509aa|down_1|NZ_CP015278.1_4121268_4122795_-	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13	NA|270aa|down_2|NZ_CP015278.1_4122864_4123674_+	pfam13622, 4HBT_3, Thioesterase-like superfamily	NA|154aa|down_3|NZ_CP015278.1_4123664_4124126_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|153aa|down_4|NZ_CP015278.1_4124118_4124577_-	NA	NA|246aa|down_5|NZ_CP015278.1_4124573_4125311_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|453aa|down_6|NZ_CP015278.1_4125415_4126774_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|361aa|down_7|NZ_CP015278.1_4126780_4127863_-	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|336aa|down_8|NZ_CP015278.1_4127859_4128867_-	cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH)	NA|217aa|down_9|NZ_CP015278.1_4128988_4129639_+	TIGR03384, betaine_BetI, transcriptional repressor BetI
GCF_002219285.1_ASM221928v1	NZ_CP015278	Mycobacterium chimaera strain DSM 44623 chromosome, complete genome	5	4667189-4667322	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4	Orphan	GGGCGGTACCCCCGGCGCGGAATGCATCGTCGCCGGGCTAC	41	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,RT,DinG,cas4,WYL,c2c9_V-U4,c2c4_V-U1	NA|129aa|up_9|NZ_CP015278.1_4657989_4658376_-,NA|118aa|up_8|NZ_CP015278.1_4658430_4658784_-,NA|455aa|up_7|NZ_CP015278.1_4658836_4660201_-,NA|98aa|up_6|NZ_CP015278.1_4660197_4660491_-,NA|54aa|up_1|NZ_CP015278.1_4664705_4664867_-,NA|79aa|down_5|NZ_CP015278.1_4676207_4676444_+	NA|129aa|up_9|NZ_CP015278.1_4657989_4658376_-	NA	NA|118aa|up_8|NZ_CP015278.1_4658430_4658784_-	NA	NA|455aa|up_7|NZ_CP015278.1_4658836_4660201_-	NA	NA|98aa|up_6|NZ_CP015278.1_4660197_4660491_-	NA	NA|76aa|up_5|NZ_CP015278.1_4660487_4660715_-	PRK04165, PRK04165, acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional	NA|490aa|up_4|NZ_CP015278.1_4661080_4662550_-	smart00857, Resolvase, Resolvase, N terminal domain	NA|448aa|up_3|NZ_CP015278.1_4662958_4664302_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|84aa|up_2|NZ_CP015278.1_4664311_4664563_-	pfam02467, Whib, Transcription factor WhiB	NA|54aa|up_1|NZ_CP015278.1_4664705_4664867_-	NA	NA|704aa|up_0|NZ_CP015278.1_4664967_4667079_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|85aa|down_0|NZ_CP015278.1_4667333_4667588_+	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein	NA|311aa|down_1|NZ_CP015278.1_4667599_4668532_-	PRK00241, nudC, NAD(+) diphosphatase	NA|357aa|down_2|NZ_CP015278.1_4668531_4669602_-	pfam02254, TrkA_N, TrkA-N domain	NA|1116aa|down_3|NZ_CP015278.1_4669650_4672998_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|1042aa|down_4|NZ_CP015278.1_4672994_4676120_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|79aa|down_5|NZ_CP015278.1_4676207_4676444_+	NA	NA|262aa|down_6|NZ_CP015278.1_4676489_4677275_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|104aa|down_7|NZ_CP015278.1_4677277_4677589_+	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|285aa|down_8|NZ_CP015278.1_4677595_4678450_-	TIGR02569, conserved_hypothetical_protein, TIGR02569 family protein	NA|396aa|down_9|NZ_CP015278.1_4678485_4679673_-	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated
