assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002216795.1_ASM221679v1	NZ_CP022316	Brachybacterium avium strain VR2415 chromosome, complete genome	1	39540-39692	1	CRISPRCasFinder	no		WYL,Cas9_archaeal,DEDDh,cas3,csa3,DinG	Orphan	TCGGCCTCGGATCCCTACGGCCAG	24	0	0	NA	NA	NA	2	2	Orphan	WYL,Cas9_archaeal,DEDDh,cas3,csa3,DinG	NA,NA|97aa|down_0|NZ_CP022316.1_39985_40276_+,NA|206aa|down_2|NZ_CP022316.1_40775_41393_+	NA|572aa|up_9|NZ_CP022316.1_24948_26664_-	pfam10128, OpcA_G6PD_assem, Glucose-6-phosphate dehydrogenase subunit	NA|518aa|up_8|NZ_CP022316.1_26660_28214_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|372aa|up_7|NZ_CP022316.1_28285_29401_-	PRK03343, PRK03343, transaldolase; Validated	NA|702aa|up_6|NZ_CP022316.1_29570_31676_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|317aa|up_5|NZ_CP022316.1_32010_32961_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|333aa|up_4|NZ_CP022316.1_32957_33956_+	PRK00283, xerD, tyrosine recombinase	NA|291aa|up_3|NZ_CP022316.1_34132_35005_+	pfam13614, AAA_31, AAA domain	NA|307aa|up_2|NZ_CP022316.1_35004_35925_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|370aa|up_1|NZ_CP022316.1_35921_37031_+	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|754aa|up_0|NZ_CP022316.1_37051_39313_+	PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed	NA|97aa|down_0|NZ_CP022316.1_39985_40276_+	NA	NA|159aa|down_1|NZ_CP022316.1_40302_40779_+	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|206aa|down_2|NZ_CP022316.1_40775_41393_+	NA	NA|311aa|down_3|NZ_CP022316.1_41424_42357_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|735aa|down_4|NZ_CP022316.1_42399_44604_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|202aa|down_5|NZ_CP022316.1_44718_45324_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|420aa|down_6|NZ_CP022316.1_45526_46786_+	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate transaminase	NA|403aa|down_7|NZ_CP022316.1_46785_47994_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|459aa|down_8|NZ_CP022316.1_48019_49396_+	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like	NA|462aa|down_9|NZ_CP022316.1_49480_50866_+	pfam03972, MmgE_PrpD, MmgE/PrpD family
GCF_002216795.1_ASM221679v1	NZ_CP022316	Brachybacterium avium strain VR2415 chromosome, complete genome	2	1134720-1134835	2	CRISPRCasFinder	no		WYL,Cas9_archaeal,DEDDh,cas3,csa3,DinG	Orphan	TCAGTGCTGCGGTGGCCGTCGGTTCTCTGGTGGCGGTCAGTGCT	44	0	0	NA	NA	NA	1	1	Orphan	WYL,Cas9_archaeal,DEDDh,cas3,csa3,DinG	NA,NA	NA|98aa|up_9|NZ_CP022316.1_1120009_1120303_-	pfam13518, HTH_28, Helix-turn-helix domain	NA|192aa|up_8|NZ_CP022316.1_1120548_1121124_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|672aa|up_7|NZ_CP022316.1_1123727_1125743_-	cd14951, NHL-2_like, NHL repeat domain of NHL repeat-containing protein 2 and similar proteins	NA|236aa|up_6|NZ_CP022316.1_1125936_1126644_-	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|235aa|up_5|NZ_CP022316.1_1126640_1127345_-	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|447aa|up_4|NZ_CP022316.1_1127538_1128879_-	TIGR01326, Includes:_O-acetylhomoserine_sulfhydrylase, OAH/OAS sulfhydrylase	NA|565aa|up_3|NZ_CP022316.1_1129032_1130727_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|325aa|up_2|NZ_CP022316.1_1130858_1131833_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|337aa|up_1|NZ_CP022316.1_1131980_1132991_+	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]	NA|476aa|up_0|NZ_CP022316.1_1133155_1134583_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|138aa|down_0|NZ_CP022316.1_1136649_1137063_-	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|174aa|down_1|NZ_CP022316.1_1137059_1137581_-	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|330aa|down_2|NZ_CP022316.1_1139234_1140224_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|369aa|down_3|NZ_CP022316.1_1140220_1141327_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|287aa|down_4|NZ_CP022316.1_1141512_1142373_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|257aa|down_5|NZ_CP022316.1_1145090_1145861_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|325aa|down_6|NZ_CP022316.1_1145914_1146889_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|434aa|down_7|NZ_CP022316.1_1146885_1148187_-	cd14747, PBP2_MalE, Maltose-binding protein MalE; possesses type 2 periplasmic binding fold	NA|121aa|down_8|NZ_CP022316.1_1148457_1148820_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|328aa|down_9|NZ_CP022316.1_1148970_1149954_+	pfam02517, Abi, CAAX protease self-immunity
GCF_002216795.1_ASM221679v1	NZ_CP022316	Brachybacterium avium strain VR2415 chromosome, complete genome	3	1325626-1325721	3	CRISPRCasFinder	no	csa3	WYL,Cas9_archaeal,DEDDh,cas3,csa3,DinG	Type I-A	CCTGTCTCAGCTGTCGCCACGCC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,Cas9_archaeal,DEDDh,cas3,csa3,DinG	NA|238aa|up_0|NZ_CP022316.1_1324891_1325605_+,NA|346aa|down_0|NZ_CP022316.1_1325924_1326962_+	NA|569aa|up_9|NZ_CP022316.1_1310706_1312413_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|251aa|up_8|NZ_CP022316.1_1312409_1313162_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|259aa|up_7|NZ_CP022316.1_1313406_1314183_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|768aa|up_6|NZ_CP022316.1_1314328_1316632_+	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	NA|318aa|up_5|NZ_CP022316.1_1316873_1317827_+	pfam18741, MTES_1575, REase_MTES_1575	NA|268aa|up_4|NZ_CP022316.1_1318029_1318833_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|306aa|up_3|NZ_CP022316.1_1318856_1319774_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|311aa|up_2|NZ_CP022316.1_1319839_1320772_-	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold	NA|579aa|up_1|NZ_CP022316.1_1322945_1324682_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|238aa|up_0|NZ_CP022316.1_1324891_1325605_+	NA	NA|346aa|down_0|NZ_CP022316.1_1325924_1326962_+	NA	NA|313aa|down_1|NZ_CP022316.1_1327082_1328021_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|631aa|down_2|NZ_CP022316.1_1328017_1329910_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|701aa|down_3|NZ_CP022316.1_1329906_1332009_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|212aa|down_4|NZ_CP022316.1_1332005_1332641_-	pfam04306, DUF456, Protein of unknown function (DUF456)	NA|109aa|down_5|NZ_CP022316.1_1332665_1332992_-	COG1687, AzlD, Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]	NA|250aa|down_6|NZ_CP022316.1_1332984_1333734_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|158aa|down_7|NZ_CP022316.1_1333850_1334324_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|224aa|down_8|NZ_CP022316.1_1334399_1335071_+	pfam04892, VanZ, VanZ like family	NA|1067aa|down_9|NZ_CP022316.1_1335364_1338565_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family
GCF_002216795.1_ASM221679v1	NZ_CP022316	Brachybacterium avium strain VR2415 chromosome, complete genome	4	1629819-1629898	4	CRISPRCasFinder	no		WYL,Cas9_archaeal,DEDDh,cas3,csa3,DinG	Orphan	GGCCGACGCCCCAGCCCCGGCCGACG	26	0	0	NA	NA	NA	1	1	Orphan	WYL,Cas9_archaeal,DEDDh,cas3,csa3,DinG	NA|361aa|up_2|NZ_CP022316.1_1626239_1627322_-,NA	NA|363aa|up_9|NZ_CP022316.1_1612297_1613386_-	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family	NA|318aa|up_8|NZ_CP022316.1_1613751_1614705_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|496aa|up_7|NZ_CP022316.1_1615036_1616524_+	cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases	NA|240aa|up_6|NZ_CP022316.1_1621638_1622358_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|646aa|up_5|NZ_CP022316.1_1622335_1624273_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|320aa|up_4|NZ_CP022316.1_1624408_1625368_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|157aa|up_3|NZ_CP022316.1_1625649_1626120_-	cd06553, ASCH_Ef3133_like, ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133	NA|361aa|up_2|NZ_CP022316.1_1626239_1627322_-	NA	NA|291aa|up_1|NZ_CP022316.1_1627650_1628523_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|161aa|up_0|NZ_CP022316.1_1628623_1629106_-	cd08898, SRPBCC_CalC_Aha1-like_5, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	NA|163aa|down_0|NZ_CP022316.1_1629931_1630420_-	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|315aa|down_1|NZ_CP022316.1_1630557_1631502_-	cd13606, PBP2_ProX_like, Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold	NA|224aa|down_2|NZ_CP022316.1_1631542_1632214_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|217aa|down_3|NZ_CP022316.1_1632210_1632861_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|289aa|down_4|NZ_CP022316.1_1632857_1633724_-	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter	NA|278aa|down_5|NZ_CP022316.1_1634764_1635598_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|233aa|down_6|NZ_CP022316.1_1635594_1636293_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|328aa|down_7|NZ_CP022316.1_1636378_1637362_-	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold	NA|242aa|down_8|NZ_CP022316.1_1637479_1638205_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|267aa|down_9|NZ_CP022316.1_1638403_1639204_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
