assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002214825.1_ASM221482v1	NZ_CP021329	Raoultella ornithinolytica strain Ro24724 chromosome, complete genome	1	553467-553556	1	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,DinG	Orphan	TACGCCTTATCCGGCCTACAGATTC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,DinG,RT	NA,NA	NA|216aa|up_9|NZ_CP021329.1_542280_542928_-	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|172aa|up_8|NZ_CP021329.1_543041_543557_+	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|109aa|up_7|NZ_CP021329.1_543543_543870_-	PRK01381, PRK01381, trp operon repressor	NA|646aa|up_6|NZ_CP021329.1_544023_545961_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|556aa|up_5|NZ_CP021329.1_546194_547862_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|411aa|up_4|NZ_CP021329.1_547930_549163_-	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|461aa|up_3|NZ_CP021329.1_549308_550691_-	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|324aa|up_2|NZ_CP021329.1_550701_551673_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|212aa|up_1|NZ_CP021329.1_551776_552412_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|339aa|up_0|NZ_CP021329.1_552429_553446_+	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|240aa|down_0|NZ_CP021329.1_553613_554333_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|408aa|down_1|NZ_CP021329.1_554436_555660_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|441aa|down_2|NZ_CP021329.1_555712_557035_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|260aa|down_3|NZ_CP021329.1_557191_557971_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|260aa|down_4|NZ_CP021329.1_558439_559219_-	PRK11449, PRK11449, metal-dependent hydrolase	NA|358aa|down_5|NZ_CP021329.1_559215_560289_-	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|54aa|down_6|NZ_CP021329.1_560539_560701_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|204aa|down_7|NZ_CP021329.1_560955_561567_-	PRK10568, PRK10568, molecular chaperone OsmY	NA|530aa|down_8|NZ_CP021329.1_561785_563375_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|226aa|down_9|NZ_CP021329.1_563466_564144_-	PRK09449, PRK09449, dUMP phosphatase; Provisional
GCF_002214825.1_ASM221482v1	NZ_CP021329	Raoultella ornithinolytica strain Ro24724 chromosome, complete genome	2	763370-763592	2	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,DinG	Orphan	AGCGCCAGCGGGGAGGTTCCCGGACAGCGGGATAACCCCCTGGCCCGGGCTACGC	55	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,DinG,RT	NA,NA	NA|291aa|up_9|NZ_CP021329.1_750785_751658_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|296aa|up_8|NZ_CP021329.1_751647_752535_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|275aa|up_7|NZ_CP021329.1_752545_753370_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|358aa|up_6|NZ_CP021329.1_753375_754449_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|437aa|up_5|NZ_CP021329.1_754441_755752_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|253aa|up_4|NZ_CP021329.1_756123_756882_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|540aa|up_3|NZ_CP021329.1_756886_758506_-	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism]	NA|460aa|up_2|NZ_CP021329.1_758518_759898_-	PRK09669, PRK09669, putative symporter YagG; Provisional	NA|656aa|up_1|NZ_CP021329.1_760257_762225_-	PRK08211, PRK08211, YjhG/YagF family D-xylonate dehydratase	NA|303aa|up_0|NZ_CP021329.1_762239_763148_-	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|300aa|down_0|NZ_CP021329.1_763812_764712_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|295aa|down_1|NZ_CP021329.1_764735_765620_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|338aa|down_2|NZ_CP021329.1_765662_766676_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|647aa|down_3|NZ_CP021329.1_766723_768664_-	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase	NA|638aa|down_4|NZ_CP021329.1_769192_771106_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|287aa|down_5|NZ_CP021329.1_771256_772117_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|270aa|down_6|NZ_CP021329.1_772436_773246_-	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|502aa|down_7|NZ_CP021329.1_773264_774770_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|274aa|down_8|NZ_CP021329.1_775122_775944_+	COG4130, COG4130, Predicted sugar epimerase [Carbohydrate transport and metabolism]	NA|501aa|down_9|NZ_CP021329.1_776042_777545_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)
GCF_002214825.1_ASM221482v1	NZ_CP021329	Raoultella ornithinolytica strain Ro24724 chromosome, complete genome	3	1524759-1524903	3	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,DinG	Orphan	GGGGATTCCCGGACATGGCGCCTGATACGCCTGTCCGGCCAGCG	44	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,DinG,RT	NA,NA|75aa|down_1|NZ_CP021329.1_1525611_1525836_+	NA|515aa|up_9|NZ_CP021329.1_1515048_1516593_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|144aa|up_8|NZ_CP021329.1_1516838_1517270_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|84aa|up_7|NZ_CP021329.1_1517379_1517631_+	PRK10638, PRK10638, glutaredoxin 3; Provisional	NA|156aa|up_6|NZ_CP021329.1_1517689_1518157_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|339aa|up_5|NZ_CP021329.1_1518156_1519173_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|274aa|up_4|NZ_CP021329.1_1519253_1520075_+	PRK11132, cysE, serine acetyltransferase; Provisional	NA|158aa|up_3|NZ_CP021329.1_1520252_1520726_-	PRK10358, PRK10358, tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL	NA|395aa|up_2|NZ_CP021329.1_1520818_1522003_-	PRK11197, lldD, L-lactate dehydrogenase; Provisional	NA|258aa|up_1|NZ_CP021329.1_1522002_1522776_-	PRK10421, PRK10421, DNA-binding transcriptional repressor LldR; Provisional	NA|552aa|up_0|NZ_CP021329.1_1522772_1524428_-	PRK10420, PRK10420, L-lactate permease; Provisional	NA|121aa|down_0|NZ_CP021329.1_1524973_1525336_-	PRK11020, PRK11020, YibL family ribosome-associated protein	NA|75aa|down_1|NZ_CP021329.1_1525611_1525836_+	NA	NA|200aa|down_2|NZ_CP021329.1_1525824_1526424_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|383aa|down_3|NZ_CP021329.1_1526420_1527569_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|640aa|down_4|NZ_CP021329.1_1527691_1529611_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|119aa|down_5|NZ_CP021329.1_1530275_1530632_+	pfam11742, DUF3302, Protein of unknown function (DUF3302)	NA|379aa|down_6|NZ_CP021329.1_1530634_1531771_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|203aa|down_7|NZ_CP021329.1_1532152_1532761_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|463aa|down_8|NZ_CP021329.1_1532867_1534256_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|614aa|down_9|NZ_CP021329.1_1534252_1536094_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional
GCF_002214825.1_ASM221482v1	NZ_CP021329	Raoultella ornithinolytica strain Ro24724 chromosome, complete genome	4	2936533-2936678	4	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,DinG	Orphan	GGCTGCGCCTTACCGGGCCTACGGGGTCTGTATGGGTATCAGG	43	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,DinG,RT	NA,NA	NA|286aa|up_9|NZ_CP021329.1_2926395_2927253_+	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|322aa|up_8|NZ_CP021329.1_2927252_2928218_+	PRK05105, PRK05105, O-succinylbenzoate synthase; Provisional	NA|459aa|up_7|NZ_CP021329.1_2928214_2929591_+	PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional	NA|142aa|up_6|NZ_CP021329.1_2929623_2930049_-	PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional	NA|181aa|up_5|NZ_CP021329.1_2930278_2930821_+	pfam07437, YfaZ, YfaZ precursor	NA|399aa|up_4|NZ_CP021329.1_2930924_2932121_+	PRK03673, PRK03673, nicotinamide mononucleotide deamidase-related protein YfaY	NA|261aa|up_3|NZ_CP021329.1_2932325_2933108_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|402aa|up_2|NZ_CP021329.1_2933121_2934327_+	PRK15440, PRK15440, L-rhamnonate dehydratase; Provisional	NA|430aa|up_1|NZ_CP021329.1_2934379_2935669_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|268aa|up_0|NZ_CP021329.1_2935683_2936487_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|393aa|down_0|NZ_CP021329.1_2936830_2938009_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|down_1|NZ_CP021329.1_2938005_2939265_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|541aa|down_2|NZ_CP021329.1_2939254_2940877_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|449aa|down_3|NZ_CP021329.1_2941147_2942494_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|357aa|down_4|NZ_CP021329.1_2942503_2943574_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|85aa|down_5|NZ_CP021329.1_2943651_2943906_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|down_6|NZ_CP021329.1_2943905_2945036_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_7|NZ_CP021329.1_2945139_2947425_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|243aa|down_8|NZ_CP021329.1_2947781_2948510_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|880aa|down_9|NZ_CP021329.1_2948744_2951384_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated
GCF_002214825.1_ASM221482v1	NZ_CP021329	Raoultella ornithinolytica strain Ro24724 chromosome, complete genome	5	5160891-5161008	5	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,DinG	Orphan	CCCCTTTGTAGCCCCGGTAAGCGCAGCGCCACCGGGG	37	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,DinG,RT	NA|31aa|up_8|NZ_CP021329.1_5151528_5151621_-,NA	NA|364aa|up_9|NZ_CP021329.1_5150440_5151532_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|31aa|up_8|NZ_CP021329.1_5151528_5151621_-	NA	NA|674aa|up_7|NZ_CP021329.1_5151767_5153789_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|241aa|up_6|NZ_CP021329.1_5154526_5155249_+	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|241aa|up_5|NZ_CP021329.1_5155190_5155913_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_4|NZ_CP021329.1_5155905_5156661_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|386aa|up_3|NZ_CP021329.1_5156644_5157802_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_2|NZ_CP021329.1_5157798_5158839_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_1|NZ_CP021329.1_5158924_5160214_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_0|NZ_CP021329.1_5160289_5160766_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|469aa|down_0|NZ_CP021329.1_5161014_5162421_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|511aa|down_1|NZ_CP021329.1_5162519_5164052_-	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|562aa|down_2|NZ_CP021329.1_5164053_5165739_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|242aa|down_3|NZ_CP021329.1_5165882_5166608_-	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|319aa|down_4|NZ_CP021329.1_5166664_5167621_-	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|406aa|down_5|NZ_CP021329.1_5167617_5168835_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|428aa|down_6|NZ_CP021329.1_5169202_5170486_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|184aa|down_7|NZ_CP021329.1_5170779_5171331_+	sd00006, TPR, Tetratricopeptide repeat	NA|184aa|down_8|NZ_CP021329.1_5171317_5171869_+	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional	NA|268aa|down_9|NZ_CP021329.1_5171865_5172669_+	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]
GCF_002214825.1_ASM221482v1	NZ_CP021329	Raoultella ornithinolytica strain Ro24724 chromosome, complete genome	6	5389084-5389207	6	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,DinG	Orphan	GGGCGTGCGGTCGGATTGCCCGGCTAAGCGTCGCGCCAGCCGG	43	1	1	5389127-5389164	NZ_CP021329.1_5389045-5389082	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,DinG,RT	NA,NA	NA|278aa|up_9|NZ_CP021329.1_5378438_5379272_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|279aa|up_8|NZ_CP021329.1_5379264_5380101_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|236aa|up_7|NZ_CP021329.1_5380087_5380795_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|446aa|up_6|NZ_CP021329.1_5381079_5382417_-	PRK06062, PRK06062, hypothetical protein; Provisional	NA|255aa|up_5|NZ_CP021329.1_5382597_5383362_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|254aa|up_4|NZ_CP021329.1_5384297_5385059_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|222aa|up_3|NZ_CP021329.1_5385051_5385717_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_CP021329.1_5385731_5386373_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|284aa|up_1|NZ_CP021329.1_5386421_5387273_-	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold	NA|489aa|up_0|NZ_CP021329.1_5387505_5388972_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|423aa|down_0|NZ_CP021329.1_5389226_5390495_-	PRK12893, PRK12893, Zn-dependent hydrolase	NA|395aa|down_1|NZ_CP021329.1_5390484_5391669_-	PRK08310, PRK08310, amidase; Provisional	NA|337aa|down_2|NZ_CP021329.1_5391699_5392710_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|348aa|down_3|NZ_CP021329.1_5392699_5393743_-	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	NA|298aa|down_4|NZ_CP021329.1_5393745_5394639_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|318aa|down_5|NZ_CP021329.1_5394641_5395595_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|555aa|down_6|NZ_CP021329.1_5395612_5397277_-	cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|372aa|down_7|NZ_CP021329.1_5397609_5398725_+	PRK13516, PRK13516, gamma-glutamyl:cysteine ligase; Provisional	NA|245aa|down_8|NZ_CP021329.1_5398802_5399537_+	COG3698, COG3698, Predicted periplasmic protein [Function unknown]	NA|1031aa|down_9|NZ_CP021329.1_5399689_5402782_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]
