The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021329	Raoultella ornithinolytica strain Ro24724 chromosome, complete genome	5497740	2025047	2078267	5497740	plate,terminase,portal,lysis,capsid,tail,tRNA,transposase,holin,integrase,head	Erwinia_phage(30.43%)	63	2038946:2038994	2071972:2072020
WP_088883616.1|2025047_2025380_+|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
WP_071984185.1|2025468_2026875_-	putrescine aminotransferase	NA	A0A1V0SKB7	Klosneuvirus	28.2	1.0e-32
WP_088883617.1|2027114_2027705_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_086815780.1|2027936_2028716_+	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_015585692.1|2028827_2030480_-	glycerone kinase	NA	NA	NA	NA	NA
WP_088883618.1|2030569_2031991_-	dihydroxyacetone kinase subunit DhaM	NA	NA	NA	NA	NA
WP_004867854.1|2032001_2032634_-	dihydroxyacetone kinase ADP-binding subunit DhaL	NA	NA	NA	NA	NA
WP_004867852.1|2032644_2033715_-	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA	NA
WP_069476413.1|2034310_2035408_+	glycerol dehydrogenase	NA	NA	NA	NA	NA
WP_088883619.1|2035503_2037429_+	PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR	NA	NA	NA	NA	NA
WP_071824665.1|2037654_2037978_+	DUF1889 family protein	NA	NA	NA	NA	NA
2038946:2038994	attL	ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGT	NA	NA	NA	NA
WP_088883621.1|2039058_2040102_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	96.8	6.3e-197
WP_077258963.1|2040101_2040731_-	phage repressor protein CI	NA	A0A218M4J1	Erwinia_phage	57.6	1.2e-62
WP_024138324.1|2040823_2041087_+	hypothetical protein	NA	A0A218M4I5	Erwinia_phage	72.4	7.4e-30
WP_088883622.1|2041117_2041627_+	phage regulatory CII family protein	NA	Q6K1F8	Salmonella_virus	91.7	3.9e-83
WP_088883623.1|2041634_2041835_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	69.4	3.5e-16
WP_053060057.1|2041915_2042203_+	hypothetical protein	NA	F1BUS4	Erwinia_phage	57.0	2.3e-24
WP_088883624.1|2042269_2042497_+	DUF2732 domain-containing protein	NA	Q6K1F6	Salmonella_virus	73.5	4.3e-18
WP_088883625.1|2042496_2042718_+	TraR/DksA family transcriptional regulator	NA	A0A0M4S5Q7	Salmonella_phage	76.7	2.7e-25
WP_088883626.1|2042719_2042911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088883627.1|2042907_2043180_+	hypothetical protein	NA	A0A218M4I8	Erwinia_phage	74.1	4.1e-31
WP_088883628.1|2043176_2043983_+	DNA cytosine methyltransferase	NA	D2XJJ8	Escherichia_phage	55.5	2.8e-75
WP_088883629.1|2043976_2046199_+	replication endonuclease	NA	A0A218M4H2	Erwinia_phage	89.2	0.0e+00
WP_064388418.1|2046314_2046755_+	DinI family protein	NA	A0A218M4I0	Erwinia_phage	82.5	5.7e-59
WP_088883630.1|2046834_2047092_+	hypothetical protein	NA	J9Q7T5	Salmonella_phage	52.9	2.1e-16
WP_088883631.1|2047418_2048462_-|portal	phage portal protein	portal	M1SV64	Escherichia_phage	81.3	5.4e-164
WP_088883632.1|2048458_2049136_-	hypothetical protein	NA	S4TT96	Salmonella_phage	37.0	1.1e-21
WP_088883633.1|2049135_2050905_-|terminase	terminase ATPase subunit family protein	terminase	A0A0F7LCK3	Escherichia_phage	87.6	2.0e-304
WP_014343393.1|2051070_2051925_+|capsid	GPO family capsid scaffolding protein	capsid	Q94MB7	Escherichia_virus	81.0	4.8e-126
WP_088883634.1|2051998_2053057_+|capsid	phage major capsid protein, P2 family	capsid	S4TUA6	Salmonella_phage	83.2	1.2e-163
WP_064388406.1|2053060_2053804_+|terminase	terminase endonuclease subunit	terminase	Q94MJ2	Enterobacteria_phage	80.3	8.7e-100
WP_088883635.1|2053900_2054407_+|head	head completion/stabilization protein	head	U5N0S3	Enterobacteria_phage	83.8	3.7e-62
WP_088883636.1|2054406_2054610_+|tail	phage tail protein	tail	A0A0F7LCN2	Escherichia_phage	79.1	2.1e-24
WP_040165625.1|2054600_2054831_+|holin	holin	holin	A0A218M4L5	Erwinia_phage	55.7	1.5e-10
WP_040165627.1|2054833_2055346_+	lysozyme	NA	A0A218M4K3	Erwinia_phage	96.5	3.3e-90
WP_088883637.1|2055342_2055774_+	lysA protein	NA	A0A218M4L6	Erwinia_phage	49.0	4.5e-32
WP_088883638.1|2055755_2056196_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A218M4K2	Erwinia_phage	68.1	1.9e-41
WP_088883639.1|2056291_2056759_+|tail	phage tail protein	tail	A0A0F7LA33	Escherichia_phage	73.5	7.7e-62
WP_088883640.1|2056751_2057201_+	phage virion morphogenesis protein	NA	O80313	Escherichia_phage	68.0	9.4e-49
WP_088883641.1|2057269_2057905_+|plate	phage baseplate assembly protein V	plate	M1SV78	Escherichia_phage	84.4	1.5e-97
WP_042346036.1|2057901_2058249_+|plate	baseplate assembly protein	plate	Q7Y4D7	Escherichia_virus	78.3	1.3e-45
WP_088883642.1|2058253_2059162_+|plate	baseplate assembly protein	plate	F1BUP3	Erwinia_phage	70.9	2.4e-112
WP_001752311.1|2059534_2060566_+|transposase	IS630-like element ISEc33 family transposase	transposase	NA	NA	NA	NA
WP_088883643.1|2060546_2060906_+|tail	phage tail protein I	tail	A0A218M4J3	Erwinia_phage	47.2	5.8e-17
WP_088883644.1|2060914_2061892_+	hypothetical protein	NA	K4I6L2	Salmonella_phage	36.5	2.0e-19
WP_157721031.1|2061896_2063288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088883646.1|2063299_2063494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088883647.1|2063494_2064664_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	51.9	5.8e-50
WP_088883648.1|2064773_2065955_+|tail	phage tail sheath protein	tail	A0A0F7LBW9	Escherichia_phage	85.9	1.9e-194
WP_087848159.1|2065968_2066484_+|tail	phage major tail tube protein	tail	A0A0F7LDZ1	Escherichia_phage	75.6	4.2e-69
WP_040230585.1|2066544_2066820_+|tail	phage tail assembly protein	tail	A0A0F7LDQ8	Escherichia_phage	77.3	4.1e-31
WP_015959005.1|2066834_2066972_+|tail	GpE family phage tail protein	tail	A0A0F7LCR6	Escherichia_phage	91.1	2.2e-17
WP_088883649.1|2066964_2069406_+|tail	phage tail tape measure protein	tail	Q858U7	Yersinia_virus	72.5	5.4e-292
WP_088883650.1|2069419_2069899_+|tail	phage tail protein	tail	A0A0F7LDE8	Escherichia_phage	77.7	9.0e-66
WP_088883651.1|2069898_2071059_+	phage late control D family protein	NA	Q7Y4C6	Escherichia_virus	81.2	1.7e-174
WP_088883652.1|2071098_2071506_-	hypothetical protein	NA	S4TTB4	Salmonella_phage	45.5	1.7e-28
WP_023343301.1|2071598_2071817_+	DNA-binding transcriptional regulator	NA	A0A2I8TV89	Erwinia_phage	88.9	3.2e-34
WP_004867844.1|2072174_2072681_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
2071972:2072020	attR	ATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGT	NA	NA	NA	NA
WP_004867842.1|2072781_2074626_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
WP_004867839.1|2074776_2076522_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.6	1.4e-76
WP_001144069.1|2076698_2076914_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_141231286.1|2076964_2077201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004867835.1|2077253_2078267_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.8	4.8e-109
>prophage 2
NZ_CP021329	Raoultella ornithinolytica strain Ro24724 chromosome, complete genome	5497740	2613218	2622846	5497740		Enterobacteria_phage(83.33%)	10	NA	NA
WP_088883719.1|2613218_2615552_-	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	84.6	0.0e+00
WP_004185276.1|2615563_2615884_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_088883720.1|2615880_2616108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077263964.1|2616104_2616656_-	ash family protein	NA	Q7M2A7	Enterobacteria_phage	72.2	5.6e-35
WP_088883721.1|2617479_2618217_+	glycoprotein 3	NA	Q7M2A2	Enterobacteria_phage	59.4	2.2e-71
WP_004098164.1|2618213_2618459_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	59.3	5.0e-20
WP_088883722.1|2618476_2619043_+	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.3	7.4e-59
WP_088883724.1|2619677_2620586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088883725.1|2620589_2621657_-	DUF3696 domain-containing protein	NA	NA	NA	NA	NA
WP_088883726.1|2621649_2622846_-	DUF262 domain-containing protein	NA	A0A0R6PKN1	Moraxella_phage	31.0	4.5e-13
>prophage 3
NZ_CP021329	Raoultella ornithinolytica strain Ro24724 chromosome, complete genome	5497740	3830791	3841940	5497740		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
WP_032717686.1|3830791_3831490_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	65.1	1.1e-83
WP_004862888.1|3831578_3831899_+	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	47.4	3.8e-20
WP_015584168.1|3831944_3833237_+	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	69.6	1.8e-161
WP_015584169.1|3833246_3833672_+	glutaredoxin-dependent arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	62.6	3.1e-41
WP_088402128.1|3833651_3834293_-	CatA-like O-acetyltransferase	NA	NA	NA	NA	NA
WP_015584171.1|3834328_3834712_-	glyoxalase I, nickel isomerase	NA	NA	NA	NA	NA
WP_004862872.1|3834802_3835573_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	29.1	1.4e-15
WP_088883905.1|3835921_3839137_+	molybdopterin-dependent oxidoreductase	NA	A0A0P0IVM8	Acinetobacter_phage	25.5	1.9e-10
WP_004862868.1|3839182_3839641_+	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	36.9	7.4e-17
WP_088883906.1|3839792_3841940_-	formate dehydrogenase subunit alpha	NA	A0A077SK27	Escherichia_phage	23.6	1.0e-28
>prophage 4
NZ_CP021329	Raoultella ornithinolytica strain Ro24724 chromosome, complete genome	5497740	4033624	4046795	5497740		Escherichia_phage(28.57%)	11	NA	NA
WP_015584251.1|4033624_4034056_+	universal stress protein G	NA	A0A1W6JNV4	Morganella_phage	39.3	3.9e-20
WP_004862416.1|4034113_4034800_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_044351728.1|4034891_4035641_-	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA	NA
WP_088883938.1|4036389_4038435_+	peptidyl-dipeptidase Dcp	NA	A0A1V0SIU1	Klosneuvirus	21.3	1.0e-17
WP_004862406.1|4038592_4038835_-	DinI family protein	NA	Q6UAW0	Klebsiella_phage	79.7	8.1e-31
WP_004862401.1|4039220_4039451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004862397.1|4039560_4040436_-	class A broad-spectrum beta-lactamase ORN-1	NA	Q1MVP3	Enterobacteria_phage	71.1	4.1e-109
WP_032687689.1|4040731_4040992_+	hypothetical protein	NA	A0A077SK33	Escherichia_phage	83.1	7.4e-30
WP_004862388.1|4041093_4042194_+	AAA family ATPase	NA	A0A077SLJ9	Escherichia_phage	81.9	3.9e-173
WP_004862386.1|4042236_4043502_-	MFS transporter	NA	NA	NA	NA	NA
WP_088883939.1|4043687_4046795_-	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	59.4	0.0e+00
>prophage 1
NZ_CP021328	Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence	446611	12755	61830	446611	transposase,protease,integrase	Escherichia_phage(26.09%)	52	12724:12783	18880:20076
12724:12783	attL	GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATGGAACAG	NA	NA	NA	NA
WP_014839893.1|12755_13772_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	3.7e-186
WP_071600436.1|14751_15465_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_017901372.1|15523_16627_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	62.1	1.0e-120
WP_077252868.1|16790_16940_+	DinI-like family protein	NA	NA	NA	NA	NA
WP_017901373.1|16955_17141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001752311.1|17665_18697_-|transposase	IS630-like element ISEc33 family transposase	transposase	NA	NA	NA	NA
WP_014839893.1|18911_19928_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	99.4	3.7e-186
WP_014839892.1|20533_21184_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
18880:20076	attR	GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATGGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGTATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACCATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGATGCTCTGTACGAAATCGCCTCCATGCGTCGGTTTGCCCGGTTATCCCTGGATAGCGCCTTGCCTGACCGCACCACCATCATGAATTTCCGCCACCTGCTGGAGCAGCATCAACTGGCCCGCCAATTGTTCAAGACCATCAATCGCTGGCTGGCCGAAGCAGGCGTCATGATGACTCAAGGCACCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCATGAAGGCCCACATTGGTGTCGATGCCAAGAGTGGCCTGACCCACAGCCTAGTCACCACCGCGGCCAACGAGCATGACCTCAATCAGCTGGGTAATCTGCTGCATGGAGAGGAGCAATTTGTCTCAGCCGATGCCGGCTACCAAGGGGCGCCACAGCGCGAGGAGCTGGCCGAGGTGGATGTGGACTGGCTGATCGCCGAGCGCCCCGGCAAGGTAAGAACCTTGAAACAGCATCCACGCAAGAACAAAACGGCCATCAACATCGAATACATGAAAGCCAGCATCCGGGCCAAGGTGGAGCACCCATTTCGCATCATCAAGCGACAGTTCGGCTTCGTGAAAGCCAGATACAAGGGGTTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCT	NA	NA	NA	NA
WP_100248964.1|21662_22827_+|transposase	IS3-like element ISKpn37 family transposase	transposase	Q716C2	Shigella_phage	48.0	1.3e-73
WP_017901334.1|23797_24373_-	TerD family protein	NA	K4JRX3	Caulobacter_phage	41.8	1.1e-30
WP_014839890.1|24453_25032_-	tellurium resistance membrane protein TerD	NA	A0A2P1N0L4	Streptomyces_phage	40.0	3.3e-06
WP_014839889.1|25082_26123_-	tellurium resistance membrane protein TerC	NA	K7QKE8	Escherichia_phage	46.8	5.5e-76
WP_014839888.1|26146_26602_-	tellurium resistance membrane protein TerB	NA	NA	NA	NA	NA
WP_014839887.1|26624_27788_-	tellurium resistance protein TerA	NA	NA	NA	NA	NA
WP_014839886.1|27784_28369_-	tellurium resistance protein TerZ	NA	K4JRX3	Caulobacter_phage	29.0	4.5e-11
WP_014839885.1|28680_29739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014839884.1|29750_30893_+	hypothetical protein	NA	A0A172Q0Y1	Acinetobacter_phage	28.5	6.3e-33
WP_014839883.1|30885_31659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024266325.1|31660_32740_+|protease	cysteine protease StiP family protein	protease	A0A172Q0S8	Acinetobacter_phage	33.5	5.6e-39
WP_014839882.1|32739_33696_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA	NA
WP_014839881.1|33706_34930_+	DUF4236 domain-containing protein	NA	NA	NA	NA	NA
WP_017901328.1|34932_35406_+	tellurium resistance protein TerW	NA	NA	NA	NA	NA
WP_017901327.1|35584_35776_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_017901326.1|35772_36312_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_001166628.1|36442_36898_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_001294656.1|36969_37335_+	mercuric ion transporter MerT	NA	NA	NA	NA	NA
WP_000732275.1|37350_37626_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_000522996.1|37653_38079_+	organomercurial transporter MerC	NA	NA	NA	NA	NA
WP_000209296.1|38117_39803_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.8e-39
WP_001277466.1|39820_40186_+	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_001087807.1|40182_40419_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_001446012.1|40402_40522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000993245.1|40484_40697_+	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_001389365.1|40934_41699_-|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_001352368.1|41971_43180_-|transposase	IS4-like element ISVsa5 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	100.0	1.8e-235
WP_001339197.1|43309_44518_-|transposase	IS4-like element ISVsa5 family transposase	transposase	Q9E8P4	Bluetongue_virus	100.0	3.0e-235
WP_000557454.1|44660_45521_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA	NA
WP_000587837.1|45533_46076_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_000951934.1|46557_46749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001330846.1|46754_47000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008126957.1|47785_50770_-|transposase	Tn3-like element ISKox2 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	24.7	8.8e-34
WP_001011939.1|51576_52218_-	type A-2 chloramphenicol O-acetyltransferase CatII	NA	G3CFL0	Escherichia_phage	45.9	7.3e-55
WP_001239317.1|52367_52868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|52947_53652_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_004118521.1|53860_54583_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	73.0	1.5e-96
WP_001549888.1|54640_55069_-	glutaredoxin-dependent arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.7	2.3e-52
WP_001549887.1|55118_56402_-	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	74.6	2.9e-175
WP_001549886.1|56497_56851_-	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	57.1	5.9e-22
WP_001549885.1|57334_58813_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	74.0	1.6e-198
WP_004118529.1|58831_59659_+	universal stress protein	NA	NA	NA	NA	NA
WP_001549953.1|59730_60927_-	MFS transporter	NA	NA	NA	NA	NA
WP_004118534.1|61455_61830_+	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	56.0	4.5e-28
>prophage 2
NZ_CP021328	Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence	446611	142494	154586	446611		Escherichia_phage(25.0%)	12	NA	NA
WP_001568041.1|142494_143196_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.2	1.6e-26
WP_009309993.1|143632_143863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152354.1|143923_144595_-	mediator of plasmid stability	NA	NA	NA	NA	NA
WP_032414078.1|144597_145569_-	StbA family protein	NA	A0A222YXF2	Escherichia_phage	46.8	1.1e-73
WP_004152352.1|145800_146232_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	52.5	1.0e-28
WP_004152351.1|146231_147503_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	63.7	3.6e-154
WP_004152350.1|147903_148800_+	RepB family plasmid replication initiator protein	NA	Q71TL8	Escherichia_phage	53.8	3.3e-69
WP_004152349.1|149121_150327_+	ParA family protein	NA	Q1MVJ3	Enterobacteria_phage	89.0	7.3e-205
WP_004152348.1|150323_151298_+	ParB/RepB/Spo0J family partition protein	NA	Q1MVJ4	Enterobacteria_phage	62.3	1.4e-105
WP_004152347.1|151674_152007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004227314.1|152231_152447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004152345.1|152558_154586_+	SAM-dependent DNA methyltransferase	NA	A0A220A2U5	Liberibacter_phage	26.6	2.1e-26
>prophage 3
NZ_CP021328	Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence	446611	159161	185752	446611	transposase,integrase	Enterobacteria_phage(20.0%)	23	172361:172420	189542:190361
WP_004152342.1|159161_160430_+|transposase	ISL3-like element ISKpn25 family transposase	transposase	Q6V7R1	Burkholderia_virus	34.7	5.2e-60
WP_004152341.1|160549_161023_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_004152340.1|162236_163019_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	90.2	4.6e-51
WP_004152339.1|163018_163351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152338.1|163357_163714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152337.1|163781_164111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152336.1|164138_164447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004153649.1|164492_164699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042015168.1|165350_165971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042015169.1|166234_167608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052433692.1|167725_168649_-	J domain-containing protein	NA	A0A1V0SF83	Hokovirus	45.5	1.4e-09
WP_042015188.1|168730_168985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042015172.1|169579_172261_-	hypothetical protein	NA	NA	NA	NA	NA
172361:172420	attL	GGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCCTTACATTT	NA	NA	NA	NA
WP_001067855.1|172412_173117_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_013213990.1|174380_174659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013213989.1|174769_175195_+	antirestriction protein	NA	A0A2D0W8Z5	Bordetella_virus	37.3	5.3e-17
WP_004199234.1|177054_177936_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	NA	A0A1B0VBP7	Salmonella_phage	52.2	2.2e-73
WP_013213985.1|178211_179192_-|transposase	IS481-like element ISKpn27 family transposase	transposase	A8RHK4	Spiroplasma_virus	27.4	2.9e-10
WP_001217881.1|179314_179872_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	98.4	2.0e-93
WP_001143760.1|180034_183040_+|transposase	Tn3-like element Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	100.0	0.0e+00
WP_001749986.1|183343_183796_-	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA	NA
WP_032488579.1|183892_184447_-	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA	NA
WP_000845048.1|184738_185752_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
189542:190361	attR	AAATGTAAGGCCTTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCCGAAGCAGATTATGCGTTCTCATAATGCGATACACCCGCTTTGCATTAACCACAGGCAGGCCGTCCCGCTCCGACTCCCGTCGCAGCAGCGCCCACACACGGCGATAACCATACGTCGGCAGGTCAGCCACCGCCATGTTTATCCGGGACAATACGGTGGTATCGTCAGAACGGGGCTGCCGTCTGCGATCCTGTCAGTCAGATGGCCGGTGAACCCGAATGCTCAACTGCGCACGCGACACGCCAAGACTTCTGCAAACGTCGCTTATTCGTCGTTCCCAGGCAACGAGGGCGCATGCGCAATCCATTTTTTTGCCCGGCCGAACTCCACGGCCTCTTTGAGTATCTCGGCTTCCATCGTCTTTTTGCCCAGAAGGCGCTGGAGTTCGCGAATTTGCTTATTGGCGGCAGCGAGTTCGGAGGCCGGCACCACTTCCTCGCCCGATGCAACAGCCGTCAGTGAACCGTCTTAATATTGCTTGCGCCATTTGAATATCTGGTTTGCATTGATGCCATGCAGGCGCGCGACATGAGACACGGTCATACCGGGCTCCATAGTCTGCTGAATAATGGCAATTTTTTCCTGCGGTGTACGACGCCGACGCCGCTCAGGTCCTGATAACACTCCAACCATCTTATCGTTCTGACTGGTATTAAACATAGTTCCAAGACTACCTCTTATTTTAAGAGAGTCGAAGTGTCTGGTGATCTATGGGGCCAGTCTAGCCCTCTTCCAAGTGTAGGGAGATATAGTCAAAGTT	NA	NA	NA	NA
>prophage 4
NZ_CP021328	Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence	446611	188844	223506	446611	transposase,integrase	Escherichia_phage(53.33%)	23	182451:182465	227598:227612
182451:182465	attL	ATGATATTGCCAGAG	NA	NA	NA	NA
WP_001067855.1|188844_189549_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001516695.1|190628_191285_+	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA	NA
WP_014839983.1|191603_192218_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	47.4	8.1e-35
WP_012477564.1|192652_193243_+	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA	NA
WP_001493762.1|193379_193952_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	39.4	3.4e-19
WP_001553819.1|194792_197690_-|transposase	Tn3-like element Tn5403 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	4.2e-182
WP_000509966.1|197784_198390_+	DNA resolvase	NA	A0A1S5Y2X8	uncultured_archaeal_virus	35.3	5.5e-20
WP_000480972.1|199194_200031_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001082320.1|200030_200834_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
WP_001043260.1|200894_201710_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	A0A0B5J4J5	Pandoravirus	27.6	5.9e-09
WP_000954592.1|202039_202216_+	DUF4102 domain-containing protein	NA	T1S9J3	Salmonella_phage	68.6	1.0e-06
WP_000427619.1|202397_203402_-|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
WP_001067855.1|205298_206003_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_002904004.1|206139_207000_+	class A extended-spectrum beta-lactamase SHV-12	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
WP_002210513.1|207020_207782_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_014839981.1|208043_208946_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.3	4.5e-159
WP_001067855.1|210579_211284_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_014839980.1|211669_212086_+	fosfomycin resistance glutathione transferase FosA3	NA	Q2LI91	Bacillus_phage	35.6	2.0e-08
WP_014839979.1|212090_212609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014839978.1|212608_213397_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_001067855.1|213896_214601_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001067855.1|217913_218618_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_032447056.1|221295_223506_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
227598:227612	attR	ATGATATTGCCAGAG	NA	NA	NA	NA
>prophage 5
NZ_CP021328	Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence	446611	232452	246175	446611		Salmonella_phage(53.85%)	21	NA	NA
WP_017900693.1|232452_233694_-	hypothetical protein	NA	A0A2P9HXK7	Yersinia_phage	29.4	8.7e-12
WP_099501131.1|234593_234983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017900695.1|235056_235302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025999285.1|235298_235643_-	DUF957 domain-containing protein	NA	NA	NA	NA	NA
WP_017900697.1|235924_236557_-	hypothetical protein	NA	K4JV11	Caulobacter_phage	41.2	8.3e-27
WP_017900698.1|236642_237077_-	hypothetical protein	NA	A0A1I9KFG8	Aeromonas_phage	28.3	4.3e-06
WP_009654204.1|237166_237487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009654227.1|237739_238027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017900700.1|238119_238641_-	DUF262 domain-containing protein	NA	A0A2H4FWH2	Salmonella_phage	68.5	5.4e-64
WP_017900701.1|238680_239313_-	hypothetical protein	NA	A0A1V0E5L6	Salmonella_phage	55.9	1.5e-28
WP_014839971.1|239569_239782_-	hypothetical protein	NA	J9Q804	Salmonella_phage	50.0	3.0e-13
WP_017900702.1|240271_240556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017900703.1|240552_240960_-	hypothetical protein	NA	H6WRY2	Salmonella_phage	56.1	3.5e-18
WP_048336627.1|241376_242450_-	hypothetical protein	NA	A6N3G8	Burkholderia_virus	56.8	1.1e-18
WP_014839970.1|242453_242678_-	hypothetical protein	NA	B1GS76	Salmonella_phage	51.2	2.3e-08
WP_017900706.1|242943_243678_-	hypothetical protein	NA	A0A1V0E5L5	Salmonella_phage	36.3	9.4e-14
WP_062878103.1|243670_243859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014839969.1|244005_244251_-	hypothetical protein	NA	S5MQM0	Escherichia_phage	65.8	6.1e-18
WP_025999286.1|244315_244927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014839968.1|244969_245173_-	hypothetical protein	NA	K7PLX1	Enterobacteria_phage	64.2	2.8e-16
WP_014839967.1|245854_246175_-	hypothetical protein	NA	J9Q750	Salmonella_phage	53.8	8.2e-31
>prophage 6
NZ_CP021328	Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence	446611	348491	404727	446611	transposase,integrase	Escherichia_phage(25.0%)	53	347626:347639	399732:399748
347626:347639	attL	AAAGACCACAAAAT	NA	NA	NA	NA
WP_042934531.1|348491_349415_+|transposase	IS5 family transposase	transposase	Q1MVF0	Enterobacteria_phage	97.7	2.5e-173
347626:347639	attL	AAAGACCACAAAAT	NA	NA	NA	NA
WP_017901130.1|349516_349960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014839936.1|350418_351378_+	DNA replication protein	NA	NA	NA	NA	NA
WP_014839935.1|351374_352130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014839934.1|352129_352453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024266349.1|352456_353515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024266348.1|353550_353868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014839933.1|353928_355062_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_017900677.1|355235_355490_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_017900676.1|355576_356638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014839932.1|357534_358419_-	hypothetical protein	NA	A0A1B0VDL5	Salmonella_phage	41.1	9.8e-50
WP_017900953.1|358990_359596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014839931.1|360183_360525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000427614.1|360853_361858_-|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
WP_048336622.1|361936_364906_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	72.9	0.0e+00
WP_001162012.1|364908_365466_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	81.3	5.8e-48
WP_000845039.1|365771_366785_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_015060105.1|366937_367678_+	subclass B1 metallo-beta-lactamase IMP-4	NA	NA	NA	NA	NA
WP_048336621.1|367767_369117_-	group II intron reverse transcriptase/maturase	NA	H7BV81	unidentified_phage	28.3	3.3e-12
WP_000679427.1|369789_370137_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_000259031.1|370130_370970_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
WP_000050481.1|371374_372916_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000359986.1|373223_373997_+	ArmA family 16S rRNA (guanine(1405)-N(7))-methyltransferase	NA	NA	NA	NA	NA
WP_077252464.1|373977_374259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002026779.1|374478_374664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002001451.1|374712_375897_+|transposase	IS4-like element ISEc29 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	35.4	4.5e-50
WP_000052512.1|376295_377771_+	ABC-F type ribosomal protection protein Msr(E)	NA	A0A1B0RXA0	Streptococcus_phage	59.0	2.3e-160
377730:377743	attR	AAAGACCACAAAAT	NA	NA	NA	NA
WP_000155092.1|377826_378711_+	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
377730:377743	attR	AAAGACCACAAAAT	NA	NA	NA	NA
WP_004896925.1|379069_379612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001067858.1|380496_381201_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_000493286.1|382243_382573_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A088CBP5	Shigella_phage	44.2	2.4e-09
WP_000780222.1|382553_382835_+	helix-turn-helix transcriptional regulator	NA	A0A2I6TC97	Escherichia_phage	38.0	1.3e-08
WP_016947617.1|383112_384093_+|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	98.8	6.8e-185
WP_001752509.1|384409_384910_-	non-heme ferritin-like protein	NA	NA	NA	NA	NA
WP_001067855.1|385236_385941_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_011638900.1|386045_386612_+	recombinase family protein	NA	A0A0C4UR34	Shigella_phage	64.6	2.2e-58
WP_014839926.1|386631_387591_+	cation transporter	NA	A0A1V0SED0	Indivirus	25.3	4.5e-08
WP_000427623.1|387711_388716_+|transposase	IS110-like element IS4321 family transposase	transposase	NA	NA	NA	NA
WP_001247892.1|389159_389450_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_001293886.1|389446_389848_+	DUF86 domain-containing protein	NA	NA	NA	NA	NA
WP_000215515.1|389837_390194_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_014839925.1|390448_390763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000792636.1|390935_391469_-	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	33.9	5.8e-21
WP_001067855.1|391561_392266_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_014839924.1|392413_392989_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_014839923.1|393127_394171_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_042934515.1|394167_395901_+	thiamine biosynthesis protein ThiF	NA	NA	NA	NA	NA
WP_042934513.1|395893_396364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014839922.1|396372_397440_+	SAVED domain-containing protein	NA	NA	NA	NA	NA
WP_014839921.1|397949_399743_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_052626781.1|400296_400653_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	47.7	5.0e-21
WP_014839920.1|400661_401936_+	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	58.8	2.2e-143
WP_004220208.1|403647_404727_-|transposase	IS481-like element ISKpn28 family transposase	transposase	NA	NA	NA	NA
