assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002214705.1_ASM221470v1	NZ_CP016315	Bacillus cereus strain D12_2 chromosome, complete genome	1	1139302-1139433	1	CRISPRCasFinder	no		cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	Orphan	GGAACCGGTCAACTAGTTGATGGAGTAAACAAGTTAGCAAACGGTTCC	48	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	NA|100aa|up_4|NZ_CP016315.1_1132436_1132736_+,NA|282aa|up_3|NZ_CP016315.1_1132790_1133636_-,NA|71aa|down_0|NZ_CP016315.1_1140434_1140647_+,NA|143aa|down_8|NZ_CP016315.1_1145491_1145920_+	NA|349aa|up_9|NZ_CP016315.1_1124849_1125896_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|312aa|up_8|NZ_CP016315.1_1125910_1126846_+	PRK12435, PRK12435, ferrochelatase; Provisional	NA|474aa|up_7|NZ_CP016315.1_1126865_1128287_+	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|451aa|up_6|NZ_CP016315.1_1128343_1129696_-	pfam13218, DUF4026, Protein of unknown function (DUF4026)	NA|789aa|up_5|NZ_CP016315.1_1129937_1132304_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|100aa|up_4|NZ_CP016315.1_1132436_1132736_+	NA	NA|282aa|up_3|NZ_CP016315.1_1132790_1133636_-	NA	NA|134aa|up_2|NZ_CP016315.1_1133865_1134267_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|638aa|up_1|NZ_CP016315.1_1134269_1136183_+	pfam05569, Peptidase_M56, BlaR1 peptidase M56	NA|191aa|up_0|NZ_CP016315.1_1136396_1136969_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|71aa|down_0|NZ_CP016315.1_1140434_1140647_+	NA	NA|102aa|down_1|NZ_CP016315.1_1140651_1140957_+	COG3860, COG3860, Uncharacterized protein conserved in bacteria [Function unknown]	NA|118aa|down_2|NZ_CP016315.1_1140983_1141337_-	pfam14470, bPH_3, Bacterial PH domain	NA|170aa|down_3|NZ_CP016315.1_1141470_1141980_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|338aa|down_4|NZ_CP016315.1_1142174_1143188_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|43aa|down_5|NZ_CP016315.1_1143228_1143357_-	pfam14149, YhfH, YhfH-like protein	NA|245aa|down_6|NZ_CP016315.1_1143537_1144272_+	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain	NA|330aa|down_7|NZ_CP016315.1_1144281_1145271_+	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|143aa|down_8|NZ_CP016315.1_1145491_1145920_+	NA	NA|511aa|down_9|NZ_CP016315.1_1146081_1147614_+	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated
GCF_002214705.1_ASM221470v1	NZ_CP016315	Bacillus cereus strain D12_2 chromosome, complete genome	2	3275152-3275531	1	CRT	no		cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	Orphan	CCTTGNNNACCNGTTGGACC	20	0	0	NA	NA	NA	7	7	Orphan	cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	NA|280aa|up_8|NZ_CP016315.1_3265832_3266672_-,NA|126aa|down_5|NZ_CP016315.1_3283146_3283524_+	NA|341aa|up_9|NZ_CP016315.1_3264720_3265743_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|280aa|up_8|NZ_CP016315.1_3265832_3266672_-	NA	NA|241aa|up_7|NZ_CP016315.1_3266723_3267446_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|280aa|up_6|NZ_CP016315.1_3267569_3268409_+	pfam10978, DUF2785, Protein of unknown function (DUF2785)	NA|149aa|up_5|NZ_CP016315.1_3268426_3268873_+	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|333aa|up_4|NZ_CP016315.1_3268881_3269880_-	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional	NA|386aa|up_3|NZ_CP016315.1_3270269_3271427_+	PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|374aa|up_2|NZ_CP016315.1_3271456_3272578_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|83aa|up_1|NZ_CP016315.1_3272641_3272890_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|154aa|up_0|NZ_CP016315.1_3273099_3273561_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|836aa|down_0|NZ_CP016315.1_3276592_3279100_-	pfam03157, Glutenin_hmw, High molecular weight glutenin subunit	NA|252aa|down_1|NZ_CP016315.1_3279246_3280002_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|181aa|down_2|NZ_CP016315.1_3280043_3280586_-	pfam11706, zf-CGNR, CGNR zinc finger	NA|398aa|down_3|NZ_CP016315.1_3280698_3281892_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|305aa|down_4|NZ_CP016315.1_3281932_3282847_-	sd00006, TPR, Tetratricopeptide repeat	NA|126aa|down_5|NZ_CP016315.1_3283146_3283524_+	NA	NA|80aa|down_6|NZ_CP016315.1_3283600_3283840_+	pfam13061, DUF3923, Protein of unknown function (DUF3923)	NA|183aa|down_7|NZ_CP016315.1_3283945_3284494_-	PRK04164, PRK04164, hypothetical protein; Provisional	NA|138aa|down_8|NZ_CP016315.1_3284693_3285107_-	pfam03899, ATP-synt_I, ATP synthase I chain	NA|443aa|down_9|NZ_CP016315.1_3285158_3286487_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]
GCF_002214705.1_ASM221470v1	NZ_CP016315	Bacillus cereus strain D12_2 chromosome, complete genome	3	3648674-3651185	3,2	CRT,CRT	no		cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	Orphan	GCNACTGGNGCTACTGGNCCTNNAGG,AGGTAACACNGGNGCTAC	26,18	4	4	3650059-3650077|3650772-3650790|3651033-3651051|3651078-3651096	NZ_CP016315.1_3786999-3786981|NZ_CP016315.1_3786999-3786981|NZ_CP016315.1_3858178-3858160|NZ_CP016315.1_910766-910784	NA:NA	62,62	62	Orphan	cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	NA|71aa|up_8|NZ_CP016315.1_3639168_3639381_-,NA|82aa|down_2|NZ_CP016315.1_3653045_3653291_+,NA|113aa|down_9|NZ_CP016315.1_3660483_3660822_-	NA|253aa|up_9|NZ_CP016315.1_3638214_3638973_-	pfam10552, ORF6C, ORF6C domain	NA|71aa|up_8|NZ_CP016315.1_3639168_3639381_-	NA	NA|224aa|up_7|NZ_CP016315.1_3639572_3640244_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|445aa|up_6|NZ_CP016315.1_3640580_3641915_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|130aa|up_5|NZ_CP016315.1_3641963_3642353_-	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|424aa|up_4|NZ_CP016315.1_3642527_3643799_-	pfam06838, Met_gamma_lyase, Methionine gamma-lyase	NA|425aa|up_3|NZ_CP016315.1_3643791_3645066_-	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|208aa|up_2|NZ_CP016315.1_3645158_3645782_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|319aa|up_1|NZ_CP016315.1_3646050_3647007_-	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|322aa|up_0|NZ_CP016315.1_3647120_3648086_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|75aa|down_0|NZ_CP016315.1_3651665_3651890_-	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|318aa|down_1|NZ_CP016315.1_3651911_3652865_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|82aa|down_2|NZ_CP016315.1_3653045_3653291_+	NA	NA|317aa|down_3|NZ_CP016315.1_3653353_3654304_-	COG3584, COG3584, Uncharacterized protein conserved in bacteria [Function unknown]	NA|619aa|down_4|NZ_CP016315.1_3654653_3656510_-	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|304aa|down_5|NZ_CP016315.1_3656523_3657435_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|251aa|down_6|NZ_CP016315.1_3657431_3658184_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|388aa|down_7|NZ_CP016315.1_3658341_3659505_-	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	NA|181aa|down_8|NZ_CP016315.1_3659622_3660165_-	COG2322, COG2322, Predicted membrane protein [Function unknown]	NA|113aa|down_9|NZ_CP016315.1_3660483_3660822_-	NA
GCF_002214705.1_ASM221470v1	NZ_CP016315	Bacillus cereus strain D12_2 chromosome, complete genome	4	4829496-4829611	2	CRISPRCasFinder	no		cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	Orphan	TTAATTAAAAGCGGAAGCGGCTCGTTCAAA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	NA|223aa|up_2|NZ_CP016315.1_4827120_4827789_-,NA|72aa|down_0|NZ_CP016315.1_4829780_4829996_+	NA|58aa|up_9|NZ_CP016315.1_4821460_4821634_+	pfam09388, SpoOE-like, Spo0E like sporulation regulatory protein	NA|220aa|up_8|NZ_CP016315.1_4821688_4822348_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|266aa|up_7|NZ_CP016315.1_4822331_4823129_+	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|114aa|up_6|NZ_CP016315.1_4823328_4823670_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|266aa|up_5|NZ_CP016315.1_4824181_4824979_-	pfam10947, DUF2628, Protein of unknown function (DUF2628)	NA|213aa|up_4|NZ_CP016315.1_4825665_4826304_+	pfam14137, DUF4304, Domain of unknown function (DUF4304)	NA|268aa|up_3|NZ_CP016315.1_4826306_4827110_-	NF033189, internalin_A, class 1 internalin InlA	NA|223aa|up_2|NZ_CP016315.1_4827120_4827789_-	NA	NA|265aa|up_1|NZ_CP016315.1_4827912_4828707_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|103aa|up_0|NZ_CP016315.1_4828758_4829067_-	pfam07315, DUF1462, Protein of unknown function (DUF1462)	NA|72aa|down_0|NZ_CP016315.1_4829780_4829996_+	NA	NA|334aa|down_1|NZ_CP016315.1_4830057_4831059_-	TIGR02905, conserved_hypothetical_protein, spore coat protein YutH	NA|164aa|down_2|NZ_CP016315.1_4831179_4831671_+	COG1267, PgpA, Phosphatidylglycerophosphatase A and related proteins [Lipid metabolism]	NA|160aa|down_3|NZ_CP016315.1_4831694_4832174_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|449aa|down_4|NZ_CP016315.1_4833383_4834730_+	pfam15609, PRTase_2, Phosphoribosyl transferase	NA|371aa|down_5|NZ_CP016315.1_4834735_4835848_+	pfam11202, PRTase_1, Phosphoribosyl transferase (PRTase)	NA|272aa|down_6|NZ_CP016315.1_4835844_4836660_+	cd07520, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|194aa|down_7|NZ_CP016315.1_4837215_4837797_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|255aa|down_8|NZ_CP016315.1_4837942_4838707_-	TIGR01457, HAD-SF-IIA-hyp2, HAD-superfamily subfamily IIA hydrolase, TIGR01457	NA|211aa|down_9|NZ_CP016315.1_4838816_4839449_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]
GCF_002214705.1_ASM221470v1	NZ_CP016315	Bacillus cereus strain D12_2 chromosome, complete genome	5	5152327-5152460	3	CRISPRCasFinder	no		cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	Orphan	GTTGATTTCTCTTCTTTTTGAGA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	NA|45aa|up_0|NZ_CP016315.1_5152004_5152139_-,NA	NA|228aa|up_9|NZ_CP016315.1_5143973_5144657_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|291aa|up_8|NZ_CP016315.1_5144683_5145556_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|256aa|up_7|NZ_CP016315.1_5145798_5146566_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|234aa|up_6|NZ_CP016315.1_5146678_5147380_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|248aa|up_5|NZ_CP016315.1_5147369_5148113_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|226aa|up_4|NZ_CP016315.1_5148374_5149052_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|145aa|up_3|NZ_CP016315.1_5149398_5149833_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|334aa|up_2|NZ_CP016315.1_5150261_5151263_-	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional	NA|91aa|up_1|NZ_CP016315.1_5151423_5151696_-	pfam12116, SpoIIID, Stage III sporulation protein D	NA|45aa|up_0|NZ_CP016315.1_5152004_5152139_-	NA	NA|236aa|down_0|NZ_CP016315.1_5153348_5154056_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|281aa|down_1|NZ_CP016315.1_5154055_5154898_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|336aa|down_2|NZ_CP016315.1_5155080_5156088_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|340aa|down_3|NZ_CP016315.1_5156187_5157207_-	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D	NA|435aa|down_4|NZ_CP016315.1_5157413_5158718_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|237aa|down_5|NZ_CP016315.1_5158757_5159468_-	pfam08680, DUF1779, TATA-box binding	NA|79aa|down_6|NZ_CP016315.1_5159513_5159750_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|507aa|down_7|NZ_CP016315.1_5159952_5161473_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|501aa|down_8|NZ_CP016315.1_5161474_5162977_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|621aa|down_9|NZ_CP016315.1_5162973_5164836_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed
GCF_002214705.1_ASM221470v1	NZ_CP016315	Bacillus cereus strain D12_2 chromosome, complete genome	6	5198273-5198385	4	CRISPRCasFinder	no		cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	Orphan	TTCTGAAGGAGCTGCTTACGCTTTTTATTTAAT	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,c2c9_V-U4,DinG,DEDDh,c2c10_CAS-V-U3	NA,NA	NA|93aa|up_9|NZ_CP016315.1_5189335_5189614_-	pfam13071, DUF3935, Protein of unknown function (DUF3935)	NA|183aa|up_8|NZ_CP016315.1_5189844_5190393_-	pfam02659, Mntp, Putative manganese efflux pump	NA|347aa|up_7|NZ_CP016315.1_5190470_5191511_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|153aa|up_6|NZ_CP016315.1_5191619_5192078_-	COG1246, ArgA, N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]	NA|287aa|up_5|NZ_CP016315.1_5192127_5192988_-	pfam09551, Spore_II_R, Stage II sporulation protein R (spore_II_R)	NA|284aa|up_4|NZ_CP016315.1_5193100_5193952_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|356aa|up_3|NZ_CP016315.1_5193951_5195019_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|196aa|up_2|NZ_CP016315.1_5195533_5196121_-	PRK04296, PRK04296, thymidine kinase; Provisional	NA|82aa|up_1|NZ_CP016315.1_5196229_5196475_-	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|424aa|up_0|NZ_CP016315.1_5196752_5198024_-	PRK09376, rho, transcription termination factor Rho; Provisional	NA|430aa|down_0|NZ_CP016315.1_5199458_5200748_-	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed	NA|286aa|down_1|NZ_CP016315.1_5201080_5201938_-	PRK07709, PRK07709, fructose-bisphosphate aldolase; Provisional	NA|123aa|down_2|NZ_CP016315.1_5202148_5202517_-	cd17553, REC_Spo0F-like, phosphoacceptor receiver (REC) domain of Spo0F and similar domains	NA|175aa|down_3|NZ_CP016315.1_5202718_5203243_+	pfam10740, DUF2529, Domain of unknown function (DUF2529)	NA|536aa|down_4|NZ_CP016315.1_5203274_5204882_-	PRK05380, pyrG, CTP synthetase; Validated	NA|177aa|down_5|NZ_CP016315.1_5205139_5205670_-	TIGR04567, DNA-directed_RNA_polymerase_subunit_delta, DNA-directed RNA polymerase delta subunit	NA|210aa|down_6|NZ_CP016315.1_5205824_5206454_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|380aa|down_7|NZ_CP016315.1_5206520_5207660_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|377aa|down_8|NZ_CP016315.1_5207681_5208812_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|284aa|down_9|NZ_CP016315.1_5208885_5209737_-	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated
