The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007525	Listeria monocytogenes serotype 4b str. 81-0558, complete genome	2971543	88162	128607	2971543	tail,integrase,plate,holin,terminase,portal	Listeria_phage(96.49%)	61	89237:89281	128707:128751
WP_010958669.1|88162_89119_+	2-hydroxyacid dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	29.6	9.3e-30
89237:89281	attL	ACTCTTAATCAGCGGGTCGGGGGTTCGAAACCCTCACAACCCATA	NA	NA	NA	NA
WP_023546303.1|89385_90588_-|integrase	site-specific integrase	integrase	A0A0B5CTW8	Listeria_phage	99.2	1.5e-221
WP_003734807.1|90682_91219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003737372.1|91267_91435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003734808.1|91592_92069_-	helix-turn-helix transcriptional regulator	NA	A8ASM2	Listeria_phage	62.7	1.2e-41
WP_023546301.1|92224_92467_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003727743.1|92463_92730_+	hypothetical protein	NA	A0A059T7Q1	Listeria_phage	100.0	2.5e-41
WP_003735007.1|92953_93148_+	hypothetical protein	NA	A0A059T6E5	Listeria_phage	100.0	1.3e-26
WP_003735006.1|93159_93444_+	hypothetical protein	NA	A0A0B5D168	Listeria_phage	100.0	1.1e-47
WP_003727747.1|93469_93751_+	hypothetical protein	NA	A0A0B5CTX3	Listeria_phage	100.0	1.0e-40
WP_003727749.1|93936_94179_-	hypothetical protein	NA	A0A059T7Q3	Listeria_phage	100.0	1.8e-38
WP_023546300.1|94242_95019_+	oxidoreductase	NA	A0A0B5D0I2	Listeria_phage	96.1	1.9e-137
WP_023546299.1|95141_95666_+	hypothetical protein	NA	A8ATY1	Listeria_phage	98.9	3.2e-88
WP_003731816.1|95672_95858_+	helix-turn-helix domain-containing protein	NA	A0A059T674	Listeria_phage	100.0	1.1e-27
WP_003734954.1|95873_96062_+	hypothetical protein	NA	A0A0B5CU43	Listeria_phage	100.0	4.5e-29
WP_010991174.1|96296_97256_+	YqaJ viral recombinase family protein	NA	A8ATY5	Listeria_phage	99.4	1.3e-177
WP_012582380.1|97255_98071_+	recombinase RecT	NA	A0A0B5CTU3	Listeria_phage	99.3	5.9e-150
WP_023546298.1|98091_99006_+	DnaD domain-containing protein	NA	A0A0B5D175	Listeria_phage	91.1	2.1e-140
WP_041197739.1|99053_99584_+	hypothetical protein	NA	A0A059T5F9	Listeria_phage	96.0	1.9e-96
WP_041197735.1|99767_100046_+	hypothetical protein	NA	A0A0B5CU46	Listeria_phage	97.7	1.6e-43
WP_023546290.1|100042_100273_+	hypothetical protein	NA	A0A059T7Z5	Listeria_phage	96.1	3.8e-38
WP_023546288.1|100275_100845_+	DUF1642 domain-containing protein	NA	A8ATY9	Listeria_phage	60.2	3.1e-57
WP_023546287.1|100841_101030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015987084.1|101026_101203_+	hypothetical protein	NA	A8ASP0	Listeria_phage	100.0	5.1e-27
WP_023546285.1|101189_101498_+	hypothetical protein	NA	A0A0B5CYR4	Listeria_phage	77.3	4.5e-26
WP_023546283.1|101746_102031_+	hypothetical protein	NA	A0A059T7S7	Listeria_phage	81.9	2.3e-37
WP_023546282.1|102027_102300_+	hypothetical protein	NA	A0A059T7Z9	Listeria_phage	92.2	2.0e-41
WP_023546281.1|102379_102862_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	91.2	4.3e-76
WP_023546280.1|102880_103063_+	hypothetical protein	NA	A8ASP6	Listeria_phage	79.4	6.5e-17
WP_041197734.1|103007_103412_+	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	84.3	2.2e-57
WP_023546277.1|103415_103802_+	DUF2481 domain-containing protein	NA	A0A0B5CU14	Listeria_phage	66.9	3.3e-42
WP_023546275.1|103822_103978_+	hypothetical protein	NA	A0A0B5D186	Listeria_phage	98.0	1.1e-22
WP_023546273.1|104065_104638_+	sigma-70 family RNA polymerase sigma factor	NA	A0A0B5D145	Listeria_phage	90.5	1.9e-91
WP_023546272.1|104872_105592_+	hypothetical protein	NA	Q9T152	Listeria_phage	53.8	1.7e-60
WP_023546270.1|105657_106200_+|terminase	terminase small subunit	terminase	A8ASJ1	Listeria_phage	95.6	3.3e-88
WP_023546268.1|106168_107500_+|terminase	PBSX family phage terminase large subunit	terminase	A8ASJ2	Listeria_phage	98.0	4.8e-258
WP_003743397.1|107512_109012_+|portal	phage portal protein	portal	A0A059T657	Listeria_phage	100.0	1.0e-277
WP_003734943.1|109017_110157_+	hypothetical protein	NA	A0A059T7W2	Listeria_phage	100.0	1.7e-208
WP_003734944.1|110235_110826_+	scaffold protein	NA	A0A059T7N8	Listeria_phage	100.0	2.5e-86
WP_003734945.1|110825_111827_+	hypothetical protein	NA	A0A059T6D4	Listeria_phage	100.0	7.4e-187
WP_003734946.1|111845_112241_+	hypothetical protein	NA	A0A059T5E3	Listeria_phage	100.0	5.1e-67
WP_003743399.1|112240_112603_+	hypothetical protein	NA	A0A059T658	Listeria_phage	100.0	8.3e-64
WP_003743401.1|112602_112941_+	hypothetical protein	NA	A0A059T7W4	Listeria_phage	100.0	2.9e-58
WP_003743402.1|112940_113348_+	hypothetical protein	NA	A0A059T7P0	Listeria_phage	100.0	2.4e-67
WP_003735047.1|113350_113788_+	hypothetical protein	NA	A0A059T6D6	Listeria_phage	100.0	2.5e-78
WP_003735056.1|113810_114050_+	hypothetical protein	NA	A0A059T5E4	Listeria_phage	98.7	3.2e-32
WP_003743404.1|114102_114525_+	hypothetical protein	NA	A8ASK4	Listeria_phage	100.0	3.1e-70
WP_023546266.1|114530_115133_+	hypothetical protein	NA	A8ASK5	Listeria_phage	99.0	3.2e-108
WP_023546265.1|115143_120510_+	tape measure protein	NA	A0A0B5CU25	Listeria_phage	85.1	0.0e+00
WP_023546263.1|120506_121334_+|tail	phage tail family protein	tail	A0A059T6D8	Listeria_phage	98.2	1.5e-156
WP_023546136.1|121348_122371_+	hypothetical protein	NA	A0A0B5D0G3	Listeria_phage	98.8	6.4e-194
WP_023546135.1|122371_123397_+	hypothetical protein	NA	A0A0B5D157	Listeria_phage	92.1	1.5e-174
WP_021496264.1|123393_124461_+|plate	BppU family phage baseplate upper protein	plate	A0A059T7W9	Listeria_phage	100.0	1.1e-148
WP_021496263.1|124457_124799_+	hypothetical protein	NA	A0A059T7P5	Listeria_phage	96.5	4.6e-56
WP_023546132.1|124799_124946_+	XkdX family protein	NA	A0A059T6D9	Listeria_phage	97.9	5.6e-19
WP_003725053.1|124982_125348_+	hypothetical protein	NA	A8ASL3	Listeria_phage	100.0	1.3e-11
WP_023546130.1|125360_125639_+|holin	holin	holin	A8ASL4	Listeria_phage	98.9	4.0e-42
WP_003734970.1|125641_126505_+	N-acetylmuramoyl-L-alanine amidase family protein	NA	Q0PRU8	Listeria_phage	100.0	2.4e-170
WP_077904884.1|126879_127944_+	Abi family protein	NA	M1PS09	Streptococcus_phage	35.5	1.0e-40
WP_003734972.1|128170_128404_+	hypothetical protein	NA	A0A059T6E1	Listeria_phage	100.0	3.3e-37
WP_003734973.1|128400_128607_+	hypothetical protein	NA	A0A059T5E7	Listeria_phage	100.0	1.8e-31
128707:128751	attR	ACTCTTAATCAGCGGGTCGGGGGTTCGAAACCCTCACAACCCATA	NA	NA	NA	NA
>prophage 2
NZ_CP007525	Listeria monocytogenes serotype 4b str. 81-0558, complete genome	2971543	168102	174629	2971543	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003728215.1|168102_168555_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|168560_168896_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003724946.1|169112_169541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003724947.1|169552_169969_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	38.6	1.3e-20
WP_003728212.1|170248_170638_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003721744.1|170650_171163_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|171210_171513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003740367.1|171554_171959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731178.1|171945_173814_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_003734720.1|173810_174629_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
>prophage 3
NZ_CP007525	Listeria monocytogenes serotype 4b str. 81-0558, complete genome	2971543	1298521	1355379	2971543	protease,tRNA	Bacillus_virus(16.67%)	56	NA	NA
WP_003734523.1|1298521_1299661_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1299740_1300136_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1300286_1300502_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003727523.1|1300625_1301159_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_010958879.1|1301174_1301840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003727521.1|1302101_1303040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1303154_1304438_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1304622_1305882_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003726393.1|1306000_1306567_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003726394.1|1306601_1307171_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003727520.1|1307272_1307815_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003726396.1|1307824_1308688_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003727519.1|1308684_1309470_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	6.7e-26
WP_003727518.1|1309603_1310464_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003727517.1|1310736_1312815_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	5.4e-107
WP_003727516.1|1312877_1314182_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_003731303.1|1314464_1315367_+	tyrosine recombinase XerC	NA	A0A142K7N4	Mycobacterium_phage	29.5	1.8e-14
WP_003724001.1|1315387_1315927_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003727514.1|1315940_1317350_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	7.5e-44
WP_003726695.1|1317370_1318150_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_003727513.1|1318252_1318672_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003724130.1|1318694_1319006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003726697.1|1319008_1319881_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003726698.1|1319922_1320519_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003727511.1|1320676_1321084_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_003727510.1|1321264_1323232_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	5.1e-123
WP_010958880.1|1323228_1325688_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.8	1.1e-101
WP_003726814.1|1325770_1326238_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_010958881.1|1326865_1328692_+	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_003727507.1|1328724_1330611_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	32.2	3.8e-43
WP_003726657.1|1330823_1331522_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	31.9	6.4e-12
WP_010958882.1|1331754_1333431_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_003726658.1|1333557_1334475_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003719566.1|1334596_1334830_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_015084731.1|1334940_1336164_+	GTPase HflX	NA	NA	NA	NA	NA
WP_003727505.1|1336156_1337383_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_003719570.1|1337584_1337953_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723435.1|1338023_1339358_+	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_010958885.1|1339501_1340797_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	62.6	1.1e-147
WP_003734519.1|1340830_1341355_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003723438.1|1341385_1342000_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_003734518.1|1342156_1342486_+	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003734517.1|1342579_1342807_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003734516.1|1342953_1344948_+	transketolase	NA	NA	NA	NA	NA
WP_003726667.1|1345168_1345408_+	YneF family protein	NA	NA	NA	NA	NA
WP_003726668.1|1345456_1346188_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	58.0	2.3e-81
WP_003726669.1|1346209_1346716_-	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	1.4e-56
WP_003726670.1|1346725_1348030_-	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	51.9	4.7e-133
WP_012681273.1|1348019_1349225_-	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	46.6	7.0e-91
WP_003727498.1|1349202_1349577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723449.1|1349869_1350598_+	UMP kinase	NA	NA	NA	NA	NA
WP_003723450.1|1350597_1351155_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003727497.1|1351385_1352144_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.1	4.4e-22
WP_014929207.1|1352157_1352946_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003726414.1|1352960_1354103_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_014929208.1|1354116_1355379_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 4
NZ_CP007525	Listeria monocytogenes serotype 4b str. 81-0558, complete genome	2971543	1848314	1856600	2971543		Synechococcus_phage(33.33%)	8	NA	NA
WP_003726209.1|1848314_1848881_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.4	8.3e-26
WP_003726210.1|1848877_1849927_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
WP_003722245.1|1849945_1851373_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_009918191.1|1851357_1853577_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.8	6.5e-159
WP_003726212.1|1853569_1854253_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1854256_1854502_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003726214.1|1854513_1855227_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.0e-40
WP_003726215.1|1855307_1856600_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 5
NZ_CP007525	Listeria monocytogenes serotype 4b str. 81-0558, complete genome	2971543	2567653	2575498	2971543		Streptococcus_phage(50.0%)	7	NA	NA
WP_003725407.1|2567653_2568625_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003725408.1|2568632_2569601_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	3.9e-68
WP_003722606.1|2569602_2570478_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_003734494.1|2570585_2572316_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.3	5.6e-174
WP_003741152.1|2572357_2573419_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_003725411.1|2573435_2574419_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	4.0e-52
WP_003722610.1|2574538_2575498_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
