assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002213845.1_ASM221384v1	NZ_CP007199	Listeria monocytogenes serotype 1/2a str. 10-0933, complete genome	1	508876-509353	1,1,1	PILER-CR,CRT,CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas9	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,TTTTAGTTACTTATTGTGAAATGTAAAT	29,29,28	0	0	NA	NA	I-A:I-A:I-A	7,7,7	7	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas9	NA|133aa|up_5|NZ_CP007199.1_503865_504264_+,NA|193aa|down_0|NZ_CP007199.1_509744_510323_+	NA|217aa|up_9|NZ_CP007199.1_499928_500579_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP007199.1_500687_502748_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP007199.1_502751_503354_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP007199.1_503381_503849_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP007199.1_503865_504264_+	NA	NA|217aa|up_4|NZ_CP007199.1_504274_504925_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP007199.1_504921_505968_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP007199.1_505983_506277_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP007199.1_506291_507563_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP007199.1_507702_508638_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP007199.1_509744_510323_+	NA	NA|227aa|down_1|NZ_CP007199.1_510429_511110_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP007199.1_511134_511494_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP007199.1_511500_511959_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP007199.1_512340_514176_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP007199.1_514276_514708_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP007199.1_514754_516185_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP007199.1_516305_517121_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NZ_CP007199.1_517401_517770_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_CP007199.1_517916_519332_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_002213845.1_ASM221384v1	NZ_CP007199	Listeria monocytogenes serotype 1/2a str. 10-0933, complete genome	2	2604506-2605993	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas9	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas9	Type II-B,Type II-C,Type II-A	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	22,22,18	22	TypeII-B,TypeII-C,TypeII-A	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas9	NA|121aa|up_0|NZ_CP007199.1_2603617_2603980_-,NA|160aa|down_3|NZ_CP007199.1_2612490_2612970_-	NA|159aa|up_9|NZ_CP007199.1_2586223_2586700_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_8|NZ_CP007199.1_2586699_2589687_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_7|NZ_CP007199.1_2590185_2591028_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_6|NZ_CP007199.1_2591075_2592557_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_5|NZ_CP007199.1_2592657_2593545_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_4|NZ_CP007199.1_2599335_2600364_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP007199.1_2600632_2602159_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP007199.1_2602200_2603052_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP007199.1_2603073_2603496_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NZ_CP007199.1_2603617_2603980_-	NA	csn2|221aa|down_0|NZ_CP007199.1_2606121_2606784_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP007199.1_2606773_2607115_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas9|1335aa|down_2|NZ_CP007199.1_2607976_2611981_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_3|NZ_CP007199.1_2612490_2612970_-	NA	NA|131aa|down_4|NZ_CP007199.1_2613154_2613547_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_5|NZ_CP007199.1_2613568_2614006_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_6|NZ_CP007199.1_2614200_2614947_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_7|NZ_CP007199.1_2614952_2615750_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_8|NZ_CP007199.1_2615752_2616619_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|280aa|down_9|NZ_CP007199.1_2616594_2617434_-	PRK13635, cbiO, energy-coupling factor ABC transporter ATP-binding protein
GCF_002213845.1_ASM221384v1	NZ_CP007199	Listeria monocytogenes serotype 1/2a str. 10-0933, complete genome	3	2708595-2708705	3	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas9	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas9	NA,NA|74aa|down_2|NZ_CP007199.1_2709474_2709696_-,NA|52aa|down_4|NZ_CP007199.1_2711637_2711793_+,NA|214aa|down_5|NZ_CP007199.1_2712364_2713006_-	NA|330aa|up_9|NZ_CP007199.1_2700520_2701510_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP007199.1_2701531_2702128_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP007199.1_2702131_2702506_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP007199.1_2702611_2703463_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP007199.1_2703581_2704421_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP007199.1_2704541_2705384_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP007199.1_2705429_2705675_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP007199.1_2705689_2706286_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP007199.1_2706394_2706712_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_CP007199.1_2706741_2708481_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP007199.1_2708807_2709272_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP007199.1_2709289_2709472_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP007199.1_2709474_2709696_-	NA	NA|455aa|down_3|NZ_CP007199.1_2709830_2711195_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP007199.1_2711637_2711793_+	NA	NA|214aa|down_5|NZ_CP007199.1_2712364_2713006_-	NA	NA|505aa|down_6|NZ_CP007199.1_2713703_2715218_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_CP007199.1_2715333_2716272_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_CP007199.1_2716314_2717262_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP007199.1_2717403_2719143_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
