The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007011	Listeria monocytogenes serotype 1/2a str. 08-7669, complete genome	2954577	98064	108096	2954577		Tupanvirus(33.33%)	7	NA	NA
WP_009924391.1|98064_99519_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	30.3	1.9e-50
WP_072215787.1|99546_99855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012951082.1|100033_101644_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.5	1.2e-45
WP_012951083.1|101701_102232_+	O-acetyl-ADP-ribose deacetylase	NA	A0A0K1L687	Scale_drop_disease_virus	49.3	3.4e-29
WP_003722118.1|102519_103986_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	8.0e-97
WP_003732117.1|104146_105919_+	DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	37.1	6.3e-80
WP_012951084.1|105942_108096_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	34.1	6.7e-44
>prophage 2
NZ_CP007011	Listeria monocytogenes serotype 1/2a str. 08-7669, complete genome	2954577	1126761	1136314	2954577		Hokovirus(28.57%)	9	NA	NA
WP_003721506.1|1126761_1127145_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_003732709.1|1127166_1128150_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
WP_010989660.1|1128164_1129178_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
WP_003721509.1|1129386_1130877_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_003727000.1|1130888_1131713_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	9.7e-68
WP_012951453.1|1131725_1132034_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003730540.1|1132093_1132498_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_012951454.1|1132626_1134183_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	3.0e-17
WP_012951455.1|1134400_1136314_+	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	36.9	1.3e-59
>prophage 3
NZ_CP007011	Listeria monocytogenes serotype 1/2a str. 08-7669, complete genome	2954577	1276604	1336044	2954577	protease,tRNA	Bacillus_virus(17.65%)	57	NA	NA
WP_003723562.1|1276604_1277744_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1277824_1278220_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1278370_1278586_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010989719.1|1278704_1279238_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|1279255_1279921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732796.1|1280182_1281121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1281235_1282519_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1282703_1283963_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723887.1|1284081_1284648_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_009924619.1|1284682_1285252_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|1285353_1285896_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|1285905_1286769_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723891.1|1286765_1287551_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_003723892.1|1287684_1288545_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_012951572.1|1288816_1290895_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	3.2e-107
WP_009924616.1|1290957_1292262_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_009911635.1|1292544_1293447_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_003724001.1|1293467_1294007_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003732800.1|1294020_1295430_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	28.7	3.7e-43
WP_003726695.1|1295450_1296230_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_012951573.1|1296332_1296752_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003724130.1|1296774_1297086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009932949.1|1297088_1297961_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003724132.1|1298002_1298599_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003732802.1|1298756_1299164_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_003723731.1|1299344_1301312_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	6.7e-123
WP_010989723.1|1301308_1303768_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	4.7e-102
WP_009913867.1|1303850_1304318_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_012951574.1|1304644_1306378_+	LapB repeat-containing protein	NA	NA	NA	NA	NA
WP_012951575.1|1306709_1308506_+	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_012951576.1|1308539_1310408_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	31.9	6.5e-43
WP_012951577.1|1310620_1311319_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	32.4	9.9e-13
WP_003723738.1|1311551_1313228_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_012951578.1|1313353_1314271_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003719566.1|1314393_1314627_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_003733804.1|1314737_1315961_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010989728.1|1315953_1317180_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_003719570.1|1317382_1317751_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723435.1|1317821_1319156_+	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_012951579.1|1319299_1320595_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	61.9	2.8e-146
WP_003723437.1|1320638_1321160_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003723438.1|1321189_1321804_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_003723439.1|1321961_1322291_+	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003723440.1|1322382_1322610_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003732809.1|1322756_1324751_+	transketolase	NA	NA	NA	NA	NA
WP_003723442.1|1324971_1325211_+	YneF family protein	NA	NA	NA	NA	NA
WP_003723443.1|1325261_1326104_-	DUF2785 domain-containing protein	NA	NA	NA	NA	NA
WP_003723445.1|1326875_1327382_-	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	4.0e-56
WP_003723446.1|1327391_1328696_-	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	52.1	9.5e-134
WP_072217143.1|1328685_1329891_-	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	47.1	3.7e-92
WP_003723448.1|1329868_1330243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723449.1|1330535_1331264_+	UMP kinase	NA	NA	NA	NA	NA
WP_003723450.1|1331263_1331821_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003732812.1|1332050_1332809_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.1	4.4e-22
WP_003732813.1|1332822_1333611_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010989733.1|1333625_1334768_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_003723454.1|1334781_1336044_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 4
NZ_CP007011	Listeria monocytogenes serotype 1/2a str. 08-7669, complete genome	2954577	1878467	1886753	2954577		Synechococcus_phage(33.33%)	8	NA	NA
WP_003722243.1|1878467_1879034_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
WP_012951771.1|1879030_1880080_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.5	4.6e-62
WP_003722245.1|1880098_1881526_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_012951772.1|1881510_1883730_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.1	5.0e-159
WP_003722247.1|1883722_1884406_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1884409_1884655_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_012951773.1|1884666_1885380_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	1.2e-42
WP_003729814.1|1885460_1886753_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 5
NZ_CP007011	Listeria monocytogenes serotype 1/2a str. 08-7669, complete genome	2954577	2400017	2439248	2954577	tail,terminase,holin	Listeria_phage(98.08%)	57	NA	NA
WP_012951924.1|2400017_2400251_-	hypothetical protein	NA	A0A059T6E1	Listeria_phage	94.8	8.0e-36
WP_012951925.1|2400691_2400901_+	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	97.1	5.5e-28
WP_012951926.1|2401002_2401407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012951927.1|2401408_2401837_+	transcriptional regulator	NA	A8ATJ2	Listeria_phage	87.3	3.9e-28
WP_012951928.1|2401848_2402346_+	AP2 domain-containing protein	NA	A8ATW6	Listeria_phage	90.9	4.9e-83
WP_003722520.1|2402620_2403394_+	DUF3825 domain-containing protein	NA	A8ATW5	Listeria_phage	100.0	9.5e-150
WP_012951929.1|2403434_2404280_-	peptidase M15	NA	A0A059T7Y8	Listeria_phage	92.6	1.4e-133
WP_003722522.1|2404279_2404561_-|holin	holin	holin	A8ASL4	Listeria_phage	94.6	3.4e-41
WP_003722523.1|2404573_2404939_-	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
WP_012951930.1|2404977_2407140_-	hypothetical protein	NA	A8ATW1	Listeria_phage	98.8	0.0e+00
WP_012951931.1|2407152_2408721_-	hypothetical protein	NA	A8ATW0	Listeria_phage	99.2	2.0e-303
WP_012951932.1|2408717_2413517_-|tail	phage tail tape measure protein	tail	A8ATV9	Listeria_phage	89.1	0.0e+00
WP_074046934.1|2413521_2413833_-	hypothetical protein	NA	A0A0B5D116	Listeria_phage	96.7	1.3e-41
WP_012951934.1|2413829_2414261_-	hypothetical protein	NA	A8ATV7	Listeria_phage	95.8	3.2e-70
WP_012951935.1|2414316_2415003_-	Ig domain-containing protein	NA	A0A0B5CYK8	Listeria_phage	97.4	2.6e-114
WP_010991155.1|2415007_2415379_-	hypothetical protein	NA	A0A0B5CTY4	Listeria_phage	99.2	5.5e-63
WP_012951936.1|2415375_2415693_-	HK97 gp10 family phage protein	NA	A8ATV4	Listeria_phage	98.1	2.4e-51
WP_003733695.1|2415682_2416048_-	hypothetical protein	NA	A8ATV3	Listeria_phage	99.2	9.9e-65
WP_012951937.1|2416047_2416401_-	hypothetical protein	NA	A8ATV2	Listeria_phage	100.0	7.6e-62
WP_012951939.1|2416582_2417455_-	hypothetical protein	NA	A8ATV0	Listeria_phage	99.0	3.0e-160
WP_003744996.1|2417477_2418032_-	hypothetical protein	NA	A8ATU9	Listeria_phage	99.5	1.1e-88
WP_012951940.1|2418127_2419171_-	hypothetical protein	NA	A0A0B5D111	Listeria_phage	96.5	1.9e-193
WP_012951941.1|2419175_2420732_-	hypothetical protein	NA	A8ATU7	Listeria_phage	97.9	9.4e-298
WP_012951942.1|2420746_2422066_-|terminase	PBSX family phage terminase large subunit	terminase	A8ATU6	Listeria_phage	99.3	2.9e-263
WP_012951943.1|2422058_2422799_-	hypothetical protein	NA	A0A0B5CTX0	Listeria_phage	99.6	2.4e-134
WP_012951944.1|2422838_2423066_-	hypothetical protein	NA	A8AU06	Listeria_phage	100.0	1.5e-34
WP_012951945.1|2423351_2423786_-	hypothetical protein	NA	A8AU03	Listeria_phage	97.2	1.6e-74
WP_012951946.1|2423926_2424310_-	DUF2481 domain-containing protein	NA	A0A0B5CYS3	Listeria_phage	96.1	5.7e-63
WP_012951947.1|2424313_2424718_-	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	89.6	1.9e-61
WP_031645468.1|2424662_2424845_-	hypothetical protein	NA	A8ASP6	Listeria_phage	81.0	2.9e-17
WP_012951948.1|2424872_2425250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012951949.1|2425271_2425751_-	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	91.2	1.4e-74
WP_012951950.1|2425747_2426149_-	hypothetical protein	NA	A8ATZ6	Listeria_phage	75.9	1.4e-48
WP_012951951.1|2426145_2426505_-	hypothetical protein	NA	A0A059T801	Listeria_phage	92.0	6.6e-45
WP_012951952.1|2426526_2426775_-	DUF3850 domain-containing protein	NA	A0A059T699	Listeria_phage	69.1	1.2e-18
WP_012951953.1|2426892_2427423_-	hypothetical protein	NA	A0A059T5F9	Listeria_phage	95.5	8.4e-97
WP_012951954.1|2427419_2427707_-	hypothetical protein	NA	A0A059T7V3	Listeria_phage	88.4	1.7e-40
WP_012951955.1|2427703_2428687_-	DnaD domain protein	NA	A8ASN4	Listeria_phage	91.7	1.4e-166
WP_012951956.1|2428703_2429363_-	ERF family protein	NA	A8ASN3	Listeria_phage	94.1	5.3e-93
WP_012951957.1|2429368_2429845_-	siphovirus Gp157 family protein	NA	A0A059T5F1	Listeria_phage	100.0	9.5e-76
WP_003734953.1|2429841_2430036_-	hypothetical protein	NA	A0A059T6E8	Listeria_phage	100.0	1.6e-29
WP_003722564.1|2430341_2430530_-	hypothetical protein	NA	Q9T175	Listeria_phage	82.3	1.8e-22
WP_012951958.1|2430638_2430854_-	hypothetical protein	NA	Q9T176	Listeria_phage	93.0	9.7e-28
WP_012951959.1|2430850_2431384_-	hypothetical protein	NA	A0A059T5F0	Listeria_phage	87.9	1.5e-77
WP_012951960.1|2431507_2432284_-	phage antirepressor Ant	NA	A0A0B5D0I2	Listeria_phage	99.2	9.6e-142
WP_003733685.1|2432265_2432541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012951961.1|2432546_2432828_-	hypothetical protein	NA	A8ATX8	Listeria_phage	96.7	3.6e-38
WP_012951962.1|2432824_2433061_-	hypothetical protein	NA	A0A059T5E9	Listeria_phage	97.4	2.8e-36
WP_012951963.1|2433125_2433485_+	DUF2513 domain-containing protein	NA	A0A2H4J4K9	uncultured_Caudovirales_phage	26.3	2.1e-06
WP_003733687.1|2433443_2433638_-	hypothetical protein	NA	A0A059T6E5	Listeria_phage	95.3	1.4e-25
WP_012951964.1|2433641_2433893_-	helix-turn-helix transcriptional regulator	NA	A8ASM3	Listeria_phage	76.7	9.3e-22
WP_012951965.1|2434055_2434361_+	helix-turn-helix transcriptional regulator	NA	A8ASM2	Listeria_phage	68.5	1.8e-27
WP_012951966.1|2434391_2434883_+	hypothetical protein	NA	A8ATX4	Listeria_phage	99.4	2.9e-91
WP_012951967.1|2434909_2435617_+	hypothetical protein	NA	A0A0B5CTT6	Listeria_phage	99.1	5.3e-123
WP_012951968.1|2435675_2436110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012951969.1|2436314_2437829_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_012951970.1|2437889_2439248_+	recombinase family protein	NA	Q8LTD8	Listeria_phage	99.8	1.1e-257
>prophage 6
NZ_CP007011	Listeria monocytogenes serotype 1/2a str. 08-7669, complete genome	2954577	2581452	2589296	2954577		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2581452_2582424_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003722605.1|2582431_2583400_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_003722606.1|2583401_2584277_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_012952017.1|2584384_2586115_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	54.0	3.0e-175
WP_012952018.1|2586156_2587218_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_012952019.1|2587234_2588218_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.2	5.8e-51
WP_003722610.1|2588336_2589296_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
>prophage 7
NZ_CP007011	Listeria monocytogenes serotype 1/2a str. 08-7669, complete genome	2954577	2824252	2830777	2954577	tail	Streptococcus_pyogenes_phage(33.33%)	10	NA	NA
WP_003734720.1|2824252_2825071_-|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
WP_012952081.1|2825067_2826936_-	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_012952082.1|2826922_2827327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721745.1|2827368_2827671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721744.1|2827718_2828231_-|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_012952083.1|2828243_2828633_-	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003732220.1|2828910_2829327_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	1.3e-20
WP_003732219.1|2829338_2829767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721740.1|2829983_2830319_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003721739.1|2830324_2830777_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
