The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022139	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K chromosome, complete genome	4859044	1205658	1219473	4859044	integrase	Enterobacteria_phage(88.89%)	15	1214873:1214888	1222087:1222102
WP_080225851.1|1205658_1206225_-	flagellar phase variation DNA invertase Hin	NA	A0A0A7NPV4	Enterobacteria_phage	72.8	1.6e-69
WP_080225852.1|1206316_1207804_+	flagellin FliC	NA	NA	NA	NA	NA
WP_080225853.1|1207871_1208411_+	phase 1 flagellin gene repressor FljA	NA	NA	NA	NA	NA
WP_080225854.1|1209202_1211536_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.4	0.0e+00
WP_000743150.1|1211550_1211871_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_001145746.1|1211867_1212128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000459283.1|1212201_1212651_-	hypothetical protein	NA	Q7M298	Enterobacteria_phage	70.5	1.5e-43
WP_000556707.1|1212643_1212943_-	hypothetical protein	NA	Q7M2A0	Enterobacteria_phage	70.7	6.1e-28
WP_001750323.1|1212932_1213535_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	70.8	4.2e-44
WP_000149859.1|1214345_1215083_+	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	62.3	1.7e-76
1214873:1214888	attL	GCAGCAGGTGAAAGCG	NA	NA	NA	NA
WP_000984203.1|1215079_1215325_+	transcriptional regulator	NA	Q7M294	Enterobacteria_phage	75.3	5.3e-30
WP_080225855.1|1215341_1215908_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.2	2.2e-55
WP_077918899.1|1216441_1217092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046093961.1|1217102_1217897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_046093960.1|1218261_1219473_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	49.9	2.8e-108
1222087:1222102	attR	CGCTTTCACCTGCTGC	NA	NA	NA	NA
>prophage 2
NZ_CP022139	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K chromosome, complete genome	4859044	1644607	1661662	4859044		Salmonella_phage(47.62%)	31	NA	NA
WP_080226949.1|1644607_1645189_-	DNA-binding protein	NA	I6R977	Salmonella_phage	59.3	1.0e-31
WP_080226950.1|1645668_1646847_-	recombinase	NA	A0A2D1GN00	Marinobacter_phage	30.8	1.5e-32
WP_031605603.1|1646852_1647059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080226951.1|1647123_1648929_-	hypothetical protein	NA	A0A0U2I1R6	Escherichia_phage	25.4	4.8e-11
WP_080226952.1|1648939_1649161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080226953.1|1649235_1649424_-	DUF1482 family protein	NA	NA	NA	NA	NA
WP_080226954.1|1649420_1649624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157698293.1|1649771_1650086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080226956.1|1650297_1650453_-	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	57.4	1.4e-07
WP_088744826.1|1650668_1650998_-	helix-turn-helix domain-containing protein	NA	A0A0M4R5D1	Salmonella_phage	43.4	1.3e-15
WP_080227579.1|1651166_1651601_+	hypothetical protein	NA	A0A0M4QX15	Salmonella_phage	61.0	3.4e-19
WP_080227578.1|1651613_1652786_+	hypothetical protein	NA	K7PLZ7	Enterobacterial_phage	52.9	5.3e-35
WP_080227577.1|1652739_1653186_+	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	57.2	1.6e-45
WP_080227576.1|1653199_1653469_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_141030866.1|1653455_1653674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080227575.1|1653670_1654093_+	hypothetical protein	NA	A0A0N6WGF1	Salmonella_phage	67.7	2.0e-40
WP_080227574.1|1654089_1654680_+	hypothetical protein	NA	M1F3E2	Salmonella_phage	48.9	4.5e-43
WP_080227573.1|1654676_1655078_+	ParB/RepB/Spo0J family partition protein	NA	S4TTI6	Salmonella_phage	98.5	2.7e-71
WP_080227571.1|1655074_1655395_+	hypothetical protein	NA	H6WRY0	Salmonella_phage	58.3	5.3e-22
WP_001749881.1|1655395_1655599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080227581.1|1655602_1655848_+	hypothetical protein	NA	Q5G8U9	Enterobacteria_phage	88.6	3.0e-33
WP_080227570.1|1655847_1656321_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	78.8	7.3e-68
WP_080227569.1|1656352_1656628_+	hypothetical protein	NA	I6R982	Salmonella_phage	95.6	8.8e-50
WP_080227567.1|1656615_1656864_+	hypothetical protein	NA	A0A0N7CG33	Salmonella_phage	85.4	5.9e-37
WP_088744657.1|1657209_1657839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157698294.1|1658007_1658172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080227564.1|1658284_1658575_+	DUF968 domain-containing protein	NA	A0A1I9KFA7	Aeromonas_phage	49.5	4.1e-21
WP_080227563.1|1658574_1658934_+	RusA family crossover junction endodeoxyribonuclease	NA	K7P6W0	Enterobacteria_phage	57.4	4.3e-36
WP_088744658.1|1658930_1660331_+	DNA cytosine methyltransferase	NA	A0A1B0V7P0	Salmonella_phage	52.1	1.7e-128
WP_088744827.1|1660330_1660936_+	hypothetical protein	NA	H9C175	Pectobacterium_phage	60.5	1.7e-69
WP_143540051.1|1660942_1661662_-	hypothetical protein	NA	S5W9D9	Leptospira_phage	28.7	2.5e-19
>prophage 3
NZ_CP022139	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K chromosome, complete genome	4859044	1665087	1687441	4859044	head,terminase,portal,capsid,plate,tail,protease	Salmonella_phage(31.82%)	28	NA	NA
WP_080227851.1|1665087_1665513_+	lysozyme	NA	A0A0S2SYD0	Pseudomonas_phage	51.4	7.5e-32
WP_080227852.1|1665808_1666327_+	KilA-N domain-containing protein	NA	A0A2H4FQV0	Salmonella_phage	68.0	1.7e-62
WP_080227853.1|1666356_1666548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080227854.1|1666602_1667037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080227855.1|1667159_1667396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080227856.1|1667395_1667755_+	HNH endonuclease	NA	Q8SBD7	Shigella_phage	55.9	8.1e-27
WP_080227857.1|1667909_1668380_+|terminase	phage terminase small subunit P27 family	terminase	Q8W632	Enterobacteria_phage	83.3	2.0e-73
WP_088744661.1|1668376_1670107_+|terminase	terminase large subunit	terminase	Q8W631	Enterobacteria_phage	86.6	3.0e-305
WP_080227000.1|1670121_1671342_+|portal	phage portal protein	portal	Q8W629	Enterobacteria_phage	70.9	2.0e-173
WP_080226998.1|1671319_1671970_+|head,protease	HK97 family phage prohead protease	head,protease	Q8HAD3	Salmonella_phage	71.3	1.6e-86
WP_080226999.1|1671980_1673189_+|capsid	phage major capsid protein	capsid	A0A192Y5T6	Salmonella_phage	64.0	2.2e-148
WP_080226997.1|1673230_1673551_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q8SBH7	Shigella_phage	50.5	1.8e-22
WP_080226996.1|1673547_1673979_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_080226995.1|1673962_1674505_+	hypothetical protein	NA	Q8HAC8	Salmonella_phage	54.5	3.8e-44
WP_080226994.1|1674504_1675080_+	hypothetical protein	NA	A0A192Y5U4	Salmonella_phage	55.9	3.0e-55
WP_080226993.1|1675091_1676597_+|tail	phage tail protein	tail	Q8HAC5	Salmonella_phage	56.7	1.5e-154
WP_080226992.1|1676596_1676953_+|tail	phage tail protein	tail	U5P076	Shigella_phage	72.0	1.4e-44
WP_080226991.1|1676949_1677240_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_080226990.1|1677375_1679169_+|tail	phage tail tape measure protein	tail	Q8W620	Enterobacteria_phage	38.9	8.5e-101
WP_080226989.1|1679203_1680499_+	hypothetical protein	NA	Q8SBG8	Shigella_phage	43.5	3.5e-96
WP_080226988.1|1680495_1681581_+|plate	baseplate protein	plate	U5P0H6	Shigella_phage	52.2	8.2e-99
WP_080226987.1|1681580_1682369_+|plate	phage baseplate assembly protein V	plate	Q8W617	Enterobacteria_phage	54.8	4.0e-26
WP_080226986.1|1682365_1682782_+	hypothetical protein	NA	A0A192Y6D0	Salmonella_phage	57.8	5.6e-40
WP_080226985.1|1682774_1683836_+|plate	baseplate J/gp47 family protein	plate	Q8W615	Enterobacteria_phage	56.7	7.5e-113
WP_080226984.1|1683823_1684456_+	DUF2313 domain-containing protein	NA	O22003	Shigella_phage	52.3	8.5e-56
WP_080226983.1|1684418_1685234_+	hypothetical protein	NA	U5P0I1	Shigella_phage	57.5	1.8e-18
WP_080226982.1|1685230_1685815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080226981.1|1685893_1687441_+	hypothetical protein	NA	A0A1L5C071	Aquamicrobium_phage	55.4	1.2e-07
>prophage 4
NZ_CP022139	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K chromosome, complete genome	4859044	1762249	1770816	4859044	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
WP_080227484.1|1762249_1763197_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.4	4.0e-09
WP_080227485.1|1763180_1763912_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1763892_1764000_-	protein YohO	NA	NA	NA	NA	NA
WP_080227486.1|1764059_1764791_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	86.4	2.5e-99
WP_080227487.1|1765013_1766699_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	90.4	2.9e-276
WP_080227488.1|1766695_1767415_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_080227489.1|1767461_1767932_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.4	8.0e-75
WP_080227490.1|1768083_1768542_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	2.2e-53
WP_080226842.1|1768782_1770816_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	3.6e-55
>prophage 5
NZ_CP022139	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K chromosome, complete genome	4859044	2529643	2576488	4859044	integrase,terminase,tail	Burkholderia_phage(24.39%)	66	2549377:2549393	2584394:2584410
WP_088744714.1|2529643_2531269_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	35.5	4.8e-10
WP_080226530.1|2531438_2532557_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	29.5	2.6e-31
WP_080226531.1|2532588_2532864_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA	NA
WP_157698300.1|2533236_2533608_-|tail	tail fiber assembly protein	tail	NA	NA	NA	NA
WP_080226533.1|2533610_2534726_-	hypothetical protein	NA	A0A2H4P6V2	Pseudomonas_phage	35.7	7.1e-05
WP_080226534.1|2534732_2535977_-	hypothetical protein	NA	Q6IWQ6	Burkholderia_phage	40.3	2.8e-18
WP_080226535.1|2535973_2536654_-	DUF2612 domain-containing protein	NA	Q6IWQ4	Burkholderia_phage	44.3	1.5e-45
WP_157698301.1|2536650_2537847_-	hypothetical protein	NA	Q6IWQ3	Burkholderia_phage	45.2	8.6e-73
WP_080226537.1|2537839_2538184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080226538.1|2538193_2538925_-	hypothetical protein	NA	Q6IWQ1	Burkholderia_phage	54.3	6.4e-47
WP_080226539.1|2538917_2539742_-	hypothetical protein	NA	Q6IWQ0	Burkholderia_phage	43.8	2.7e-54
WP_141030821.1|2539738_2540041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080226541.1|2540037_2540583_-	hypothetical protein	NA	Q6IWP8	Burkholderia_phage	38.1	6.5e-20
WP_080226542.1|2540582_2542238_-	hypothetical protein	NA	A0A1W6JPF2	Morganella_phage	23.9	4.1e-17
WP_080226543.1|2542299_2542989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080226544.1|2543245_2543689_-	hypothetical protein	NA	Q6IWV4	Burkholderia_phage	55.4	2.3e-31
WP_080226545.1|2543688_2544132_-	hypothetical protein	NA	I7ATP4	Escherichia_phage	52.4	1.2e-35
WP_080226546.1|2544141_2545683_-	DUF3383 domain-containing protein	NA	I7B2P4	Escherichia_phage	40.0	1.7e-94
WP_080226547.1|2545685_2546225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080226548.1|2546217_2546586_-	hypothetical protein	NA	A0A0F6YPT0	Pseudomonas_phage	39.3	8.8e-21
WP_088744715.1|2546582_2547029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080226550.1|2547058_2547511_-	DUF4054 domain-containing protein	NA	A0A0U2CI04	Pseudomonas_phage	42.9	1.2e-22
WP_080226551.1|2547513_2547891_-	hypothetical protein	NA	Q6IWU7	Burkholderia_phage	37.7	8.2e-14
WP_080226552.1|2547905_2549021_-	DUF2184 domain-containing protein	NA	I6ZXX2	Escherichia_phage	47.5	4.7e-89
WP_080226553.1|2549032_2549527_-	hypothetical protein	NA	NA	NA	NA	NA
2549377:2549393	attL	CGCCAGACTGGCAAAAT	NA	NA	NA	NA
WP_080226554.1|2549526_2550711_-	DUF2213 domain-containing protein	NA	A0A2H5BG39	Pseudoalteromonas_phage	37.0	5.2e-46
WP_157698302.1|2550707_2551580_-	hypothetical protein	NA	Q6IWU3	Burkholderia_phage	41.3	6.0e-60
WP_080226556.1|2551494_2553033_-	DUF1073 domain-containing protein	NA	Q6IWU2	Burkholderia_phage	48.2	4.6e-111
WP_080226557.1|2553032_2554667_-|terminase	phage terminase large subunit	terminase	H9C191	Pectobacterium_phage	69.7	4.4e-229
WP_080226558.1|2554666_2555686_-|terminase	terminase small subunit	terminase	A0A0U2RXW9	Escherichia_phage	54.8	7.1e-60
WP_088744831.1|2555685_2555937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080226560.1|2555936_2556806_-	hypothetical protein	NA	A0A1B1INP7	uncultured_Mediterranean_phage	53.3	6.2e-81
WP_080226561.1|2556798_2557590_-	transcriptional regulator	NA	R4TG31	Halovirus	45.2	1.0e-50
WP_080226562.1|2557789_2558038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088744832.1|2558141_2558333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080228015.1|2558473_2558866_-	M15 family metallopeptidase	NA	A0A1P8DTR0	Salmonella_phage	72.4	5.1e-51
WP_088744716.1|2559234_2559849_+	DUF3828 domain-containing protein	NA	NA	NA	NA	NA
WP_157698303.1|2559939_2560089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088744717.1|2560097_2560406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157698304.1|2560632_2560788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080228001.1|2560784_2561207_-	tellurite resistance TerB family protein	NA	Q71TK7	Escherichia_phage	77.8	2.1e-50
WP_080228002.1|2561579_2561870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080227984.1|2562186_2562762_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	59.0	3.0e-55
WP_080227983.1|2562758_2563055_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	65.3	5.6e-34
WP_080227982.1|2563051_2563645_-	DUF1367 family protein	NA	H9C173	Pectobacterium_phage	47.2	1.8e-47
WP_080227985.1|2563707_2563908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080227566.1|2564073_2564703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080228011.1|2565416_2565674_-	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	98.8	6.3e-42
WP_115276863.1|2565675_2566164_-	hypothetical protein	NA	A0A1V0E5L5	Salmonella_phage	92.1	1.6e-38
WP_001749881.1|2566167_2566371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088744833.1|2566371_2566587_-	hypothetical protein	NA	Q5G8U8	Enterobacteria_phage	74.5	5.9e-17
WP_088744834.1|2567831_2568650_-	replication protein	NA	V5URT9	Shigella_phage	66.4	8.2e-51
WP_080226960.1|2568678_2569161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080226959.1|2569138_2569369_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_088744835.1|2569465_2569858_+	helix-turn-helix domain-containing protein	NA	I6PD69	Cronobacter_phage	54.5	2.2e-30
WP_080226958.1|2569879_2570254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080226957.1|2570246_2570630_+	hypothetical protein	NA	A0A2H4FNB7	Salmonella_phage	47.8	4.9e-14
WP_080226956.1|2570841_2570997_+	DUF1391 domain-containing protein	NA	M4QQ57	Salicola_phage	57.4	1.4e-07
WP_157698305.1|2571017_2571155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079941873.1|2571166_2571373_+	cell division inhibitor protein	NA	I6PBM9	Cronobacter_phage	41.2	7.4e-09
WP_080226504.1|2571437_2571734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080226503.1|2571744_2573994_+	hypothetical protein	NA	H9C157	Pectobacterium_phage	35.1	5.5e-105
WP_080226507.1|2574020_2574485_+	siphovirus Gp157 family protein	NA	H9C156	Pectobacterium_phage	53.5	1.5e-36
WP_080226502.1|2574499_2574937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080226501.1|2575004_2575217_+	hypothetical protein	NA	A0A0U2RY08	Escherichia_phage	54.9	8.4e-16
WP_088744718.1|2575213_2576488_+|integrase	site-specific integrase	integrase	A0A0U2JGI6	Escherichia_phage	55.0	8.4e-127
2584394:2584410	attR	CGCCAGACTGGCAAAAT	NA	NA	NA	NA
>prophage 6
NZ_CP022139	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K chromosome, complete genome	4859044	2961781	2969415	4859044		Morganella_phage(28.57%)	9	NA	NA
WP_080226702.1|2961781_2963212_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	56.6	8.0e-102
WP_080226703.1|2963285_2963981_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	26.6	1.8e-06
WP_080226704.1|2964105_2964372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080226706.1|2965022_2966216_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.8	1.1e-112
WP_024131163.1|2966457_2966646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|2966656_2966869_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_080226708.1|2967210_2968479_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.4	9.9e-229
WP_080226709.1|2968481_2968901_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	59.8	2.2e-36
WP_080226710.1|2969220_2969415_-	hypothetical protein	NA	A0A0M4RTP2	Salmonella_phage	51.5	8.2e-18
>prophage 7
NZ_CP022139	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K chromosome, complete genome	4859044	3648067	3686957	4859044	transposase,integrase,plate	Enterobacteria_phage(28.57%)	30	3640457:3640472	3665537:3665552
3640457:3640472	attL	TATTTTAAATGCATGG	NA	NA	NA	NA
WP_021553258.1|3648067_3649282_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	55.0	2.9e-129
WP_080224984.1|3649648_3650899_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	46.5	8.9e-97
WP_061376311.1|3650910_3652014_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	9.0e-61
WP_080224983.1|3652296_3653349_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	59.0	3.9e-114
WP_088744776.1|3653450_3653852_-	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
WP_080224982.1|3653909_3655154_-	esterase FrsA	NA	NA	NA	NA	NA
WP_001292018.1|3655242_3655701_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_080224981.1|3655949_3657407_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
WP_080224980.1|3657666_3658722_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_080224979.1|3658972_3659713_+	murein L,D-transpeptidase	NA	NA	NA	NA	NA
WP_080224978.1|3659683_3660451_-	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000284051.1|3660663_3661242_-	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	30.8	1.3e-13
WP_080224977.1|3661481_3663926_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_080224976.1|3664034_3664802_+	amidohydrolase	NA	NA	NA	NA	NA
WP_080224975.1|3664963_3665371_+	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA	NA
WP_080224973.1|3665612_3668180_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
3665537:3665552	attR	CCATGCATTTAAAATA	NA	NA	NA	NA
WP_080224972.1|3668498_3669218_+	adhesin/invasin protein PagN	NA	NA	NA	NA	NA
WP_088744777.1|3671483_3672178_-|transposase	IS1 family transposase	transposase	A0A0U2RK18	Escherichia_phage	86.6	1.6e-119
WP_088744839.1|3672304_3672700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080224970.1|3672787_3674896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088744778.1|3674907_3677037_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	24.2	7.9e-21
WP_001142963.1|3677275_3677794_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_080226037.1|3678485_3678983_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_080226038.1|3679006_3680491_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_088744840.1|3680493_3680919_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_080226040.1|3680923_3682765_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_080226041.1|3682728_3683778_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_080226042.1|3683782_3685078_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_080226043.1|3685074_3685608_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_080226044.1|3685610_3686957_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 8
NZ_CP022139	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K chromosome, complete genome	4859044	4453364	4500337	4859044	tRNA,tail,plate	Burkholderia_phage(47.06%)	46	NA	NA
WP_080225211.1|4453364_4454363_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_080225210.1|4454450_4455761_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_023231879.1|4456007_4456523_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001030592.1|4456620_4456830_-	CsbD family protein	NA	NA	NA	NA	NA
WP_080225209.1|4456961_4458287_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_000646079.1|4458470_4459079_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_000002902.1|4459187_4459556_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_080225208.1|4459726_4462147_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_080225207.1|4462225_4463272_-	pilus assembly protein	NA	NA	NA	NA	NA
WP_079775533.1|4463268_4464006_-	molecular chaperone	NA	NA	NA	NA	NA
WP_080225206.1|4464021_4466553_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_023184580.1|4466637_4467210_-	fimbrial-like protein	NA	NA	NA	NA	NA
WP_080225205.1|4468019_4468892_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_080225204.1|4468905_4469403_-	chorismate lyase	NA	NA	NA	NA	NA
WP_080225203.1|4469582_4470500_-	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000973642.1|4470662_4472021_-	maltoporin	NA	NA	NA	NA	NA
WP_000179169.1|4472118_4473228_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_080225202.1|4473589_4474780_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_080225201.1|4474909_4476454_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_001252081.1|4476468_4477359_+	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_080225200.1|4477702_4479178_+	D-xylose transporter XylE	NA	NA	NA	NA	NA
WP_080225199.1|4479224_4479635_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_080225198.1|4479776_4481873_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_080225197.1|4481872_4482610_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_080225196.1|4482606_4483245_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_023165043.1|4483308_4483551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080225195.1|4483993_4485643_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_080225194.1|4486031_4487381_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000615248.1|4487507_4487855_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
WP_023184600.1|4488430_4488718_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	49.1	1.8e-16
WP_080225193.1|4488720_4489326_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	56.4	4.3e-57
WP_080225192.1|4489338_4489653_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_080225191.1|4489812_4490268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080225190.1|4490264_4490462_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	1.1e-06
WP_080225189.1|4490451_4491867_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	69.2	5.7e-185
WP_000907500.1|4491866_4492391_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.0	4.0e-67
WP_023177420.1|4492442_4492760_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001728452.1|4492719_4492848_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_080225188.1|4492941_4495227_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	28.3	2.3e-66
WP_080225187.1|4495226_4496180_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	52.3	1.2e-37
WP_023177426.1|4496179_4496389_+	phage Tail protein X	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_080225186.1|4496376_4497417_+	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	46.2	1.0e-74
WP_080225185.1|4497426_4498149_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_001093500.1|4498246_4498606_+	hypothetical protein	NA	Q6QIA0	Burkholderia_phage	64.2	1.4e-34
WP_080225184.1|4498596_4499712_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.5	1.1e-101
WP_080225183.1|4499704_4500337_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	2.3e-24
>prophage 1
NZ_CP022140	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence	109681	17666	67280	109681	transposase,bacteriocin	uncultured_virus(23.08%)	32	NA	NA
WP_080226157.1|17666_17927_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_080226156.1|17929_19678_-	colicin	NA	NA	NA	NA	NA
WP_080226155.1|20061_20544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088744861.1|22820_23426_-	recombinase family protein	NA	A0A1S5Y2X8	uncultured_archaeal_virus	34.2	1.8e-18
WP_088744863.1|23520_26418_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.5	1.0e-180
WP_080227279.1|27740_28586_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_080227289.1|30270_30486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080227280.1|30777_31605_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_080227281.1|31668_35259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080227283.1|36506_36704_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
WP_080227284.1|37138_37324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088744865.1|37527_38736_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	4.6e-50
WP_080227287.1|39696_39966_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_080227286.1|39969_40500_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_088744867.1|40598_41807_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
WP_088744869.1|41881_43212_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	69.3	3.6e-72
WP_088744871.1|43342_44597_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	31.6	7.4e-27
WP_080227760.1|44939_45950_-	replication initiation protein	NA	J9Q7H0	Salmonella_phage	56.3	2.6e-86
WP_023994210.1|46695_47862_+	plasmid-partitioning protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	96.4	1.2e-220
WP_080227759.1|47861_48821_+	ParB/RepB/Spo0J family plasmid partition protein	NA	I3WF22	Macacine_betaherpesvirus	76.9	9.1e-134
WP_023994162.1|49621_50104_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001195098.1|50094_50379_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_080227067.1|50499_50754_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_080227076.1|56348_56459_+|transposase	transposase	transposase	A0A077SLN2	Escherichia_phage	74.3	5.1e-09
WP_080227069.1|57674_58877_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	71.0	2.2e-76
WP_080227070.1|60180_60384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080227071.1|60425_60677_-	hypothetical protein	NA	A0A248SLB9	Klebsiella_phage	49.1	2.1e-05
WP_080227072.1|62329_62662_+	nikA protein	NA	NA	NA	NA	NA
WP_080227073.1|62671_65371_+	IncI1-type relaxase NikB	NA	NA	NA	NA	NA
WP_080227074.1|65587_65776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088744873.1|66351_66639_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_080227077.1|66911_67280_-|transposase	transposase	transposase	A0A0P0ZCV4	Stx2-converting_phage	44.7	2.2e-11
