The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022138	Salmonella enterica subsp. enterica serovar Waycross strain SA20041608 chromosome, complete genome	4812886	1431249	1481680	4812886	coat,transposase,tail,portal,holin,lysis,protease	Salmonella_phage(56.14%)	67	NA	NA
WP_048658925.1|1431249_1431708_+|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.5	1.3e-13
WP_000785620.1|1432406_1433645_+	alanine transaminase	NA	NA	NA	NA	NA
WP_010723117.1|1433694_1433766_-	membrane protein YpdK	NA	NA	NA	NA	NA
WP_000484431.1|1434168_1435089_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	53.5	1.1e-75
WP_000639889.1|1435609_1435852_+	YfdY family protein	NA	NA	NA	NA	NA
WP_000955747.1|1436126_1437518_-	phosphoglycerate transporter PgtP	NA	NA	NA	NA	NA
WP_088759368.1|1437953_1439147_+	phosphoglycerate transport regulator PgtC	NA	NA	NA	NA	NA
WP_000678495.1|1439143_1441150_+	two-component system sensor histidine kinase PgtB	NA	NA	NA	NA	NA
WP_000930845.1|1441139_1442387_+	two-component system response regulator PgtA	NA	NA	NA	NA	NA
WP_071054666.1|1442654_1443593_+|protease	omptin family outer membrane protease PgtE	protease	NA	NA	NA	NA
WP_001208732.1|1443854_1444058_-	hypothetical protein	NA	C6ZR24	Salmonella_phage	97.0	2.7e-32
WP_001281207.1|1444154_1444505_-	hypothetical protein	NA	I6R980	Salmonella_phage	99.1	5.4e-60
WP_088758622.1|1444749_1445016_-	hypothetical protein	NA	A0A1V0E5L9	Salmonella_phage	96.6	2.4e-44
WP_088758623.1|1446333_1446753_-	HNH endonuclease	NA	E7EKU5	Edwardsiella_phage	75.6	2.2e-60
WP_088758624.1|1446754_1447594_-	ead/Ea22-like family protein	NA	A0A0M5M1J9	Salmonella_phage	97.2	1.3e-51
WP_001748035.1|1447590_1448001_-	hypothetical protein	NA	A0A1R3Y5S0	Salmonella_virus	94.1	5.7e-69
WP_001214770.1|1447997_1448168_-	DUF2737 family protein	NA	I6S642	Salmonella_phage	100.0	6.1e-25
WP_088758625.1|1448178_1448472_-	DUF2856 family protein	NA	A0A1V0E5L7	Salmonella_phage	99.0	1.6e-49
WP_001016182.1|1448487_1449036_-	3'-5' exoribonuclease	NA	C6ZR35	Salmonella_phage	100.0	2.1e-106
WP_088758626.1|1449044_1449551_-	single-stranded DNA-binding protein	NA	C6ZR36	Salmonella_phage	99.4	8.6e-91
WP_070798588.1|1449551_1450259_-	recombinase	NA	E7C9Q0	Salmonella_phage	98.3	2.0e-138
WP_000361564.1|1450452_1450566_-	host cell division inhibitory peptide Kil	NA	C6ZR39	Salmonella_phage	100.0	7.8e-13
WP_020838488.1|1450558_1450720_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	E7C9Q3	Salmonella_phage	100.0	4.9e-24
WP_000776962.1|1450789_1451104_-	superinfection exclusion protein	NA	E7C9Q4	Salmonella_phage	100.0	1.9e-56
WP_088758627.1|1451379_1451667_-	hypothetical protein	NA	Q76H36	Enterobacteria_phage	97.9	1.7e-48
WP_088758628.1|1451700_1452315_-	pentapeptide repeat-containing protein	NA	I6S1T3	Salmonella_phage	90.6	7.5e-49
WP_053253401.1|1452399_1452660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088758629.1|1452668_1453007_-	hypothetical protein	NA	E7C9Q7	Salmonella_phage	92.9	5.6e-54
WP_125866875.1|1453027_1453210_-	hypothetical protein	NA	A0A220NQW5	Salmonella_phage	96.7	6.3e-28
WP_023135942.1|1453577_1454240_-	LexA family transcriptional regulator	NA	A0A0M4QWY1	Salmonella_phage	100.0	1.7e-126
WP_000067726.1|1454358_1454574_+	helix-turn-helix transcriptional regulator	NA	A0A0M4RTV8	Salmonella_phage	100.0	4.1e-34
WP_001103492.1|1454684_1454966_+	hypothetical protein	NA	Q76H54	Enterobacteria_phage	100.0	4.3e-44
WP_001125981.1|1455000_1455147_+	DUF2740 domain-containing protein	NA	A0A075B8K7	Enterobacteria_phage	100.0	1.5e-19
WP_000067077.1|1455139_1455973_+	replication protein	NA	A0A1R3Y5R9	Salmonella_virus	99.3	4.2e-151
WP_001248403.1|1455969_1457346_+	AAA family ATPase	NA	Q76H51	Enterobacteria_phage	99.3	1.1e-252
WP_001036039.1|1457342_1457612_+	hypothetical protein	NA	I6S1N5	Salmonella_phage	98.9	8.4e-45
WP_116837232.1|1457685_1458123_+	recombination protein NinB	NA	C6ZR55	Salmonella_phage	97.2	1.6e-77
WP_000113770.1|1458259_1458436_+	NinE family protein	NA	Q76H73	Enterobacteria_phage	100.0	1.0e-27
WP_088758631.1|1458422_1458797_+	DUF2591 domain-containing protein	NA	K7PH48	Enterobacterial_phage	73.1	3.9e-40
WP_000950975.1|1458789_1458966_+	protein ninF	NA	G9L691	Escherichia_phage	100.0	9.7e-26
WP_088758632.1|1458958_1459564_+	protein NinG	NA	A0A1I9LJQ2	Stx_converting_phage	68.2	1.8e-58
WP_001659073.1|1459560_1459764_+	Phage NinH	NA	A0A075B8J4	Enterobacteria_phage	94.0	8.8e-31
WP_000219138.1|1459744_1459924_+	hypothetical protein	NA	A0A1V0E5I7	Salmonella_phage	100.0	7.1e-24
WP_088758633.1|1459920_1460544_+	antitermination protein	NA	C6ZR62	Salmonella_phage	98.6	3.4e-113
WP_000738703.1|1460978_1461305_+|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
WP_017441427.1|1461288_1461726_+	lysozyme	NA	Q5G8R3	Enterobacteria_phage	97.9	8.2e-74
WP_000979454.1|1461722_1462193_+|lysis	lysis protein	lysis	H6WRZ5	Salmonella_phage	87.2	1.2e-62
WP_088758634.1|1462405_1462936_+	KilA-N domain-containing protein	NA	B8K1H1	Salmonella_phage	97.7	3.1e-91
WP_000537950.1|1463395_1463653_+	DUF551 domain-containing protein	NA	A0A193GZ43	Enterobacter_phage	81.5	3.7e-26
WP_000807785.1|1463800_1464043_+	DUF2560 family protein	NA	A0A0M4R322	Salmonella_phage	100.0	7.5e-37
WP_088758635.1|1464046_1464436_+	hypothetical protein	NA	Q76H27	Enterobacteria_phage	98.4	9.5e-74
WP_088758636.1|1464435_1464840_+	Decoration protein	NA	C6ZR73	Salmonella_phage	97.8	7.6e-66
WP_001629224.1|1464852_1465311_+	hypothetical protein	NA	A0A2P1MXF5	Escherichia_phage	66.2	3.3e-49
WP_001749919.1|1465310_1466771_+	hypothetical protein	NA	W6MW26	Pseudomonas_phage	76.5	4.3e-220
WP_088758637.1|1466770_1468948_+|portal	portal protein	portal	Q5C835	Enterobacteria_phage	98.8	0.0e+00
WP_088758638.1|1468961_1469870_+	scaffolding protein	NA	I6S5W6	Salmonella_phage	93.4	2.0e-146
WP_088758639.1|1469869_1471162_+|coat	coat protein	coat	Q76H21	Enterobacteria_phage	98.8	8.8e-241
WP_088758640.1|1471200_1471410_+	hypothetical protein	NA	A0A192Y697	Salmonella_phage	91.3	1.3e-29
WP_088758641.1|1471393_1471894_+	hypothetical protein	NA	I1TEJ0	Salmonella_phage	97.6	4.3e-87
WP_088758642.1|1471853_1473272_+	hypothetical protein	NA	I1TEJ1	Salmonella_phage	98.1	2.8e-272
WP_088758643.1|1473275_1473977_+|tail	phage tail protein	tail	C6ZR14	Salmonella_phage	97.0	2.2e-76
WP_000627703.1|1473976_1474432_+	DUF2824 family protein	NA	E7C9U3	Salmonella_phage	100.0	1.8e-87
WP_088758644.1|1474434_1475124_+	DNA transfer protein	NA	A0A1R3Y5P8	Salmonella_virus	97.8	1.9e-88
WP_088758645.1|1476503_1478333_+	DNA transfer protein	NA	A0A192Y934	Salmonella_phage	75.9	2.6e-254
WP_088759369.1|1478350_1478680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088758646.1|1478928_1479438_-	HNH endonuclease	NA	A0A291AXK3	Shigella_phage	44.3	2.2e-30
WP_088758647.1|1479526_1481680_+	hypothetical protein	NA	A0A193GYB8	Enterobacter_phage	44.3	7.5e-128
>prophage 2
NZ_CP022138	Salmonella enterica subsp. enterica serovar Waycross strain SA20041608 chromosome, complete genome	4812886	1722009	1731180	4812886	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|1722009_1722957_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
WP_000824854.1|1722940_1723672_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|1723652_1723760_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|1723819_1724551_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|1724773_1726459_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|1726455_1727175_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950415.1|1727221_1727689_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	89.7	6.7e-74
WP_001197955.1|1727745_1728276_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703137.1|1728447_1728906_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_088758685.1|1729146_1731180_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	8.0e-55
>prophage 3
NZ_CP022138	Salmonella enterica subsp. enterica serovar Waycross strain SA20041608 chromosome, complete genome	4812886	1897130	1904300	4812886		Morganella_phage(33.33%)	8	NA	NA
WP_000394197.1|1897130_1897550_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_088758737.1|1897552_1898821_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.4	1.4e-227
WP_000208509.1|1899273_1899486_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131163.1|1899496_1899685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088758738.1|1899848_1901060_-	porin	NA	Q1MVN1	Enterobacteria_phage	53.6	3.9e-105
WP_000107435.1|1901709_1902021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000377042.1|1902100_1902796_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_080233166.1|1902869_1904300_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
>prophage 4
NZ_CP022138	Salmonella enterica subsp. enterica serovar Waycross strain SA20041608 chromosome, complete genome	4812886	2630561	2717583	4812886	capsid,tail,portal,holin,integrase,protease,terminase,tRNA,plate	Salmonella_phage(35.09%)	114	2671092:2671106	2714009:2714023
WP_000829536.1|2630561_2631089_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
WP_000272238.1|2631085_2631187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000460698.1|2631392_2631839_+	DUF441 domain-containing protein	NA	NA	NA	NA	NA
WP_079948029.1|2631818_2632613_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_088758884.1|2632713_2633898_+	CynX/NimT family MFS transporter	NA	NA	NA	NA	NA
WP_001222534.1|2634016_2634364_+	DUF488 domain-containing protein	NA	NA	NA	NA	NA
WP_000487135.1|2634349_2634661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000673492.1|2634729_2634981_-	DUF333 domain-containing protein	NA	NA	NA	NA	NA
WP_001589065.1|2635176_2635275_+	YoaK family small membrane protein	NA	NA	NA	NA	NA
WP_000512149.1|2635413_2635662_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_001532438.1|2635975_2636617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000513733.1|2636846_2637029_-	DUF1869 domain-containing protein	NA	NA	NA	NA	NA
WP_001248993.1|2637031_2637394_-	DUF1971 domain-containing protein	NA	NA	NA	NA	NA
WP_000457190.1|2637567_2638206_-	leucine efflux protein LeuE	NA	NA	NA	NA	NA
WP_000617990.1|2638402_2638948_-	chorismate mutase	NA	NA	NA	NA	NA
WP_000208086.1|2639262_2639511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153218876.1|2639618_2639792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000190263.1|2639764_2640613_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_088759382.1|2640681_2641275_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_088758885.1|2641419_2642208_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA	NA
WP_000234683.1|2642316_2642967_-	metal-binding protein ZinT	NA	NA	NA	NA	NA
WP_088758886.1|2643160_2643487_-	four-helix bundle copper-binding protein	NA	NA	NA	NA	NA
WP_000456065.1|2643680_2644814_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_000947455.1|2644895_2645486_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000950207.1|2645479_2646277_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_000966636.1|2646270_2647083_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020898692.1|2647072_2648047_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000946087.1|2648046_2649681_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_088758887.1|2650362_2650677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088758888.1|2650825_2651356_+	cytochrome b	NA	A0A0U2QLA7	Escherichia_phage	70.5	2.8e-36
WP_000761744.1|2651438_2652482_-	exo-alpha-sialidase	NA	NA	NA	NA	NA
WP_001518864.1|2652820_2653291_-	Hsp20 family protein	NA	NA	NA	NA	NA
WP_077677844.1|2653488_2653713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000758947.1|2653912_2654038_-	lipoprotein	NA	NA	NA	NA	NA
WP_000977725.1|2654415_2654760_+	c-type lysozyme inhibitor	NA	NA	NA	NA	NA
WP_048590760.1|2655995_2656553_-	virulence membrane protein PagC	NA	Q9LA63	Enterobacterial_phage	33.0	1.7e-15
WP_010989183.1|2657359_2657623_+	virulence protein PagD	NA	NA	NA	NA	NA
WP_001537306.1|2657754_2657967_+	cold shock-like protein CspF	NA	NA	NA	NA	NA
WP_011233071.1|2658383_2658905_+	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA	NA
WP_000497451.1|2659085_2659325_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
WP_023218769.1|2659542_2659707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023226907.1|2660204_2661014_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	9.2e-63
WP_001277616.1|2661086_2661464_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158843.1|2661612_2662155_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_023218771.1|2662346_2663075_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	53.3	1.4e-62
WP_023218772.1|2663091_2663505_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	1.9e-19
WP_000917281.1|2664550_2665675_-	type III secretion system effector SopF	NA	NA	NA	NA	NA
WP_001521673.1|2666122_2666335_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.5e-20
WP_088758889.1|2668430_2668850_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	59.8	3.8e-36
WP_088758890.1|2669304_2670435_+	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	33.6	7.9e-36
WP_088758891.1|2670488_2671025_-|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	98.3	1.1e-93
WP_088759383.1|2671027_2671879_-|tail	phage tail protein	tail	A0A1S6KZZ8	Salmonella_phage	98.6	1.8e-162
2671092:2671106	attL	CCGTCAATAAGCTCA	NA	NA	NA	NA
WP_023220967.1|2672947_2673529_-|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	34.1	7.7e-19
WP_021000618.1|2673521_2674646_-|plate	baseplate J/gp47 family protein	plate	A0A0C5AEG2	Bacteriophage	44.7	7.2e-90
WP_021000619.1|2674642_2674966_-	hypothetical protein	NA	A0A067ZJ13	Vibrio_phage	41.3	6.0e-13
WP_024145350.1|2674962_2675430_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_088758892.1|2675426_2676053_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	55.9	6.5e-32
WP_001623396.1|2676053_2677055_-	phage late control D	NA	A0A0C5AJ59	Bacteriophage	36.3	1.8e-55
WP_088758893.1|2677044_2677263_-|tail	phage tail protein	tail	A0A0C5AEF4	Bacteriophage	50.0	1.1e-10
WP_088759384.1|2677255_2679160_-|tail	phage tail tape measure protein	tail	A0A097I4X9	Vibrio_phage	26.0	1.1e-40
WP_001623392.1|2679866_2680148_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001623391.1|2680157_2680679_-|tail	phage major tail tube protein	tail	A0A067ZJA9	Vibrio_phage	53.2	1.2e-47
WP_088758894.1|2680691_2682161_-|tail	phage tail protein	tail	A0A059WKP9	Vibrio_phage	54.3	1.3e-147
WP_088758895.1|2682160_2682460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021000628.1|2682459_2682945_-	hypothetical protein	NA	A0A067ZIL8	Vibrio_phage	36.0	8.4e-19
WP_088758896.1|2682941_2683286_-	sugar transporter	NA	A0A067ZJA6	Vibrio_phage	43.9	3.5e-19
WP_079954473.1|2683292_2683748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088758897.1|2683748_2684792_-|capsid	major capsid protein	capsid	A0A059WRQ2	Vibrio_phage	44.3	3.5e-70
WP_021000632.1|2684807_2685194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057516508.1|2685204_2686269_-|protease	Clp protease ClpP	protease	A0A067ZG37	Vibrio_phage	51.4	2.0e-81
WP_021000634.1|2686261_2687824_-|portal	phage portal protein	portal	A0A067ZJA4	Vibrio_phage	64.7	1.5e-189
WP_021000636.1|2688071_2689931_-|terminase	phage terminase large subunit family protein	terminase	A0A059WKL6	Vibrio_phage	64.0	8.8e-234
WP_020844527.1|2689936_2690482_-	hypothetical protein	NA	A0A067ZIZ9	Vibrio_phage	37.2	2.6e-16
WP_020844528.1|2690481_2691072_-	hypothetical protein	NA	A0A067ZI74	Vibrio_phage	53.7	1.4e-36
WP_024143310.1|2691595_2692312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021000639.1|2692670_2693207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088758898.1|2693347_2693908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088758899.1|2693933_2694482_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_088758900.1|2694478_2695093_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	91.7	5.1e-106
WP_000226307.1|2695092_2695374_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
WP_001294874.1|2695360_2695750_-	membrane protein	NA	K7PHB9	Enterobacterial_phage	71.0	1.8e-40
WP_000658039.1|2695841_2696030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088758902.1|2696556_2696973_-	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA	NA
WP_088758903.1|2697098_2697824_-	pertussis toxin-like subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	64.1	1.8e-78
WP_023195405.1|2698024_2698603_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	57.8	3.2e-49
WP_088759385.1|2698617_2699607_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	97.3	2.7e-189
WP_127172885.1|2699614_2700475_-	KilA-N domain-containing protein	NA	A0A192Y6F8	Salmonella_phage	99.0	1.6e-161
WP_088758905.1|2700491_2700881_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	99.2	3.2e-69
WP_088758906.1|2700889_2701771_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	99.0	1.9e-170
WP_000054227.1|2701767_2702241_-	PerC family transcriptional regulator	NA	A0A1C9IHW0	Salmonella_phage	94.6	3.9e-53
WP_079819575.1|2702237_2703212_-	hypothetical protein	NA	A0A1C9IHW0	Salmonella_phage	98.1	4.1e-166
WP_000620702.1|2703208_2703433_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_088758907.1|2703429_2704269_-	peptidase	NA	A0A1C9IHV9	Salmonella_phage	98.2	2.4e-146
WP_024131287.1|2704293_2704623_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A088CBP5	Shigella_phage	90.8	2.6e-40
WP_000147078.1|2704612_2704921_+	helix-turn-helix transcriptional regulator	NA	A0A088CD40	Shigella_phage	93.1	2.5e-45
WP_001525520.1|2704939_2705116_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	94.6	4.6e-28
WP_000509731.1|2705255_2705810_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
WP_088758908.1|2705838_2706063_-	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	98.6	2.5e-34
WP_088758909.1|2706160_2706856_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.1	1.6e-127
WP_001067433.1|2707061_2707247_+	hypothetical protein	NA	A0A1C9II97	Salmonella_phage	73.3	1.2e-13
WP_000078504.1|2707322_2707574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000997190.1|2708142_2708514_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
WP_023195414.1|2708571_2709399_+	YfdQ family protein	NA	Q8HAA2	Salmonella_phage	98.2	9.2e-151
WP_023241359.1|2709535_2710075_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	99.4	2.2e-97
WP_088758910.1|2710145_2710646_+	ead/Ea22-like family protein	NA	Q8HAA6	Salmonella_phage	90.6	8.9e-40
WP_023228880.1|2710645_2710996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088758911.1|2710992_2711616_+	Eaa protein	NA	A0A1V0E5L6	Salmonella_phage	90.8	1.4e-79
WP_047589036.1|2712054_2712291_+	excisionase	NA	NA	NA	NA	NA
WP_057515930.1|2712280_2713423_+|integrase	tyrosine-type recombinase/integrase	integrase	O21929	Phage_21	80.6	6.3e-174
WP_000444509.1|2713536_2714787_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	6.7e-20
2714009:2714023	attR	CCGTCAATAAGCTCA	NA	NA	NA	NA
WP_088758913.1|2714958_2715624_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_023218775.1|2715620_2715950_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_000476069.1|2715961_2716423_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000004540.1|2716476_2717583_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP022138	Salmonella enterica subsp. enterica serovar Waycross strain SA20041608 chromosome, complete genome	4812886	2859620	2903361	4812886	tail,integrase,terminase,lysis,protease	Escherichia_phage(42.86%)	57	2897181:2897196	2909787:2909802
WP_011233082.1|2859620_2859941_-	hypothetical protein	NA	E5G6P3	Salmonella_phage	77.1	1.0e-09
WP_088758932.1|2860158_2861034_+	SPI-2 type III secretion system effector PipB	NA	NA	NA	NA	NA
WP_058107701.1|2861256_2861937_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.5	4.4e-82
WP_024138909.1|2862623_2862815_-	DUF2767 family protein	NA	A0A0M4R5C3	Salmonella_phage	97.7	5.8e-16
WP_001530989.1|2862923_2863358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088758933.1|2863713_2864307_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	86.4	6.9e-92
WP_088758934.1|2864296_2865121_-|tail	phage tail protein	tail	A0A0M4QWS3	Salmonella_phage	95.6	3.4e-153
WP_088758935.1|2865117_2866827_-|tail	tail fiber protein	tail	A0A0U2SAV1	Escherichia_phage	65.6	7.6e-91
WP_000729406.1|2866823_2867450_-	hypothetical protein	NA	A0A0U2RK03	Escherichia_phage	71.6	3.3e-92
WP_001643834.1|2867433_2868660_-	hypothetical protein	NA	A0A0U2RJZ0	Escherichia_phage	63.9	3.7e-148
WP_001261467.1|2868656_2868989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088758936.1|2868985_2869702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010835743.1|2869698_2870742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000061271.1|2870741_2871017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000011138.1|2871013_2871730_-	hypothetical protein	NA	A0A0U2JGI7	Escherichia_phage	36.5	1.3e-28
WP_080210447.1|2871729_2873784_-	hypothetical protein	NA	A0A2R3UAN6	Myoviridae_environmental_samples	35.8	1.3e-20
WP_023136430.1|2873907_2874495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001133547.1|2874494_2874932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079948669.1|2874935_2876330_-	hypothetical protein	NA	A0A0U2KD19	Escherichia_phage	37.0	9.3e-71
WP_010835739.1|2876335_2877274_-	hypothetical protein	NA	A0A0U2SH76	Escherichia_phage	39.5	1.9e-51
WP_031604700.1|2877257_2877668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088758937.1|2877685_2878111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088758938.1|2878123_2878609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079898116.1|2878673_2879705_-	DUF2184 domain-containing protein	NA	A0A0U2QQI2	Escherichia_phage	44.9	4.8e-72
WP_023181116.1|2879722_2880595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088758939.1|2880615_2882190_-	NUDIX hydrolase	NA	Q6UJ14	Burkholderia_virus	48.6	1.3e-20
WP_088758940.1|2882190_2883066_-	hypothetical protein	NA	A0A0U2I1R8	Escherichia_phage	45.8	1.5e-55
WP_001150142.1|2883037_2884468_-	DUF1073 domain-containing protein	NA	A0A0U2S5X9	Escherichia_phage	37.9	2.6e-92
WP_010835733.1|2884467_2885739_-	hypothetical protein	NA	A0A0U2JTW9	Escherichia_phage	38.3	5.1e-84
WP_010835732.1|2885728_2886700_-|terminase	terminase small subunit	terminase	I6NV32	Burkholderia_virus	33.2	2.0e-24
WP_058108913.1|2886795_2887011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088758941.1|2887125_2887629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088759388.1|2887957_2888401_-|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	78.7	4.7e-53
WP_088758942.1|2888421_2888910_-	lysozyme	NA	M9P0E5	Enterobacteria_phage	66.9	6.6e-56
WP_001526513.1|2888887_2889190_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000658037.1|2889392_2889581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088758943.1|2889973_2890552_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	52.0	1.8e-44
WP_000717784.1|2890548_2890842_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	65.3	2.1e-33
WP_001643788.1|2890838_2891435_-	DUF1367 family protein	NA	H9C173	Pectobacterium_phage	74.2	6.5e-82
WP_000474096.1|2891503_2891695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001129735.1|2891878_2892217_-	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	86.6	3.7e-50
WP_000180135.1|2892216_2892387_-	hypothetical protein	NA	I6S1S6	Salmonella_phage	87.5	6.3e-06
WP_010835728.1|2892383_2892986_-	restriction endonuclease subunit M	NA	A0A2R9YJG0	Escherichia_phage	87.8	7.8e-99
WP_000918618.1|2892978_2893227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010835727.1|2893230_2893911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010835726.1|2893948_2895337_-	helicase DnaB	NA	Q76H51	Enterobacteria_phage	47.3	2.3e-106
WP_010835725.1|2895333_2896314_-	helix-turn-helix domain-containing protein	NA	H9C164	Pectobacterium_phage	79.6	4.0e-44
WP_088758944.1|2896316_2896541_-	hypothetical protein	NA	H9C163	Pectobacterium_phage	44.7	1.4e-08
WP_000429172.1|2896563_2897010_-	hypothetical protein	NA	H9C162	Pectobacterium_phage	51.1	1.9e-25
WP_000364674.1|2897074_2897308_-	helix-turn-helix transcriptional regulator	NA	A0A0U2S629	Escherichia_phage	44.4	2.9e-09
2897181:2897196	attL	GCAGTTGCAGCACCAA	NA	NA	NA	NA
WP_024136813.1|2897416_2897872_+	helix-turn-helix domain-containing protein	NA	A0A0U2QW76	Escherichia_phage	51.7	1.7e-34
WP_088758945.1|2898558_2898882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088758946.1|2898924_2901165_+	hypothetical protein	NA	H9C157	Pectobacterium_phage	34.8	1.5e-107
WP_088758947.1|2901161_2901716_+	siphovirus Gp157 family protein	NA	H9C156	Pectobacterium_phage	59.9	1.5e-48
WP_000916251.1|2901718_2901901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001643772.1|2902113_2902338_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010835719.1|2902338_2903361_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	53.5	9.2e-92
2909787:2909802	attR	TTGGTGCTGCAACTGC	NA	NA	NA	NA
>prophage 6
NZ_CP022138	Salmonella enterica subsp. enterica serovar Waycross strain SA20041608 chromosome, complete genome	4812886	4399624	4444376	4812886	tail,plate,tRNA	Burkholderia_phage(38.1%)	46	NA	NA
WP_088759281.1|4399624_4400623_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_023227586.1|4400710_4402021_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_000416271.1|4402267_4402783_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001030592.1|4402882_4403092_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010989093.1|4403113_4403227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001128113.1|4403223_4404549_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_000646079.1|4404727_4405336_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_000002900.1|4405444_4405813_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000017360.1|4405983_4408404_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000455249.1|4408502_4409375_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_023234097.1|4409388_4409886_-	chorismate lyase	NA	NA	NA	NA	NA
WP_000782497.1|4410066_4410984_-	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_088759282.1|4411147_4412506_-	maltoporin	NA	NA	NA	NA	NA
WP_000179176.1|4412593_4413703_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_000695415.1|4414064_4415255_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_088759283.1|4415386_4416931_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_088759284.1|4416945_4417836_+	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000982752.1|4418001_4418412_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_079903205.1|4418554_4420651_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_023209501.1|4420650_4421388_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_088759285.1|4421384_4422023_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_001541297.1|4422086_4422329_-	outer membrane protein	NA	NA	NA	NA	NA
WP_000790025.1|4422772_4424422_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000136394.1|4424809_4426159_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_088759286.1|4426289_4426637_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	3.7e-21
WP_001226440.1|4427213_4427501_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	5.1e-16
WP_057935362.1|4427503_4428109_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	60.4	8.4e-61
WP_045899807.1|4428121_4428436_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	48.2	8.3e-20
WP_088759287.1|4428595_4429051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000875314.1|4429047_4429245_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_088759288.1|4429234_4430662_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.7	4.0e-194
WP_020437575.1|4430661_4431186_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	3.6e-68
WP_001003640.1|4431237_4431555_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001185654.1|4431514_4431643_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_088759289.1|4431739_4434106_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	31.4	3.3e-68
WP_088759290.1|4434105_4435059_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	52.3	2.1e-37
WP_088759406.1|4435058_4435268_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_088759291.1|4435255_4436299_+	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.6	1.9e-76
WP_088759292.1|4436308_4437031_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	41.0	5.1e-12
WP_000593181.1|4437358_4437721_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	6.2e-43
WP_088759293.1|4437717_4438647_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
WP_088759294.1|4438646_4440194_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
WP_001093501.1|4440357_4440717_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_088759295.1|4440707_4441823_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.4	4.5e-100
WP_000359506.1|4441815_4442448_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_088759296.1|4442450_4444376_+|tail	phage tail protein	tail	A0A0M3ULH6	Salmonella_phage	40.5	3.5e-52
