assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002211585.1_ASM221158v1	NZ_CP022117	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 chromosome, complete genome	1	611870-611970	1	CRISPRCasFinder	no		cas3,WYL,csa3,cas14j,DEDDh,DinG	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,cas14j,DEDDh,DinG,RT,c2c8_V-U2,c2c9_V-U4	NA,NA|367aa|down_6|NZ_CP022117.1_617235_618336_-	NA|470aa|up_9|NZ_CP022117.1_598017_599427_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP022117.1_599988_600441_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP022117.1_600468_601971_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP022117.1_601995_604674_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP022117.1_604825_605227_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP022117.1_605226_606171_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP022117.1_606321_606591_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP022117.1_606832_608968_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP022117.1_609077_609962_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP022117.1_610067_610148_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP022117.1_612183_613428_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|314aa|down_1|NZ_CP022117.1_613526_614468_+	cd08416, PBP2_MdcR, The C-terminal substrate-binding domian of LysR-type transcriptional regulator MdcR, which involved in the malonate catabolism contains the type 2 periplasmic binding fold	NA|144aa|down_2|NZ_CP022117.1_614430_614862_-	cd11640, HutP, Histidine Utilizing Protein, the hut operon positive regulatory protein	NA|127aa|down_3|NZ_CP022117.1_615697_616078_-	pfam03817, MadL, Malonate transporter MadL subunit	NA|73aa|down_4|NZ_CP022117.1_616313_616532_-	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase	NA|229aa|down_5|NZ_CP022117.1_616552_617239_-	pfam10620, MdcG, Phosphoribosyl-dephospho-CoA transferase MdcG	NA|367aa|down_6|NZ_CP022117.1_617235_618336_-	NA	NA|294aa|down_7|NZ_CP022117.1_618350_619232_-	TIGR03134, malonate_gamma, biotin-independent malonate decarboxylase, gamma subunit	NA|310aa|down_8|NZ_CP022117.1_619231_620161_-	PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed	NA|111aa|down_9|NZ_CP022117.1_620153_620486_-	TIGR03130, malonate_delta, malonate decarboxylase acyl carrier protein
GCF_002211585.1_ASM221158v1	NZ_CP022117	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 chromosome, complete genome	2	983096-983735	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,WYL,csa3,cas14j,DEDDh,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,10,10	10	Orphan	cas3,WYL,csa3,cas14j,DEDDh,DinG,RT,c2c8_V-U2,c2c9_V-U4	NA,NA	NA|381aa|up_9|NZ_CP022117.1_965783_966926_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP022117.1_966969_969726_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP022117.1_969783_971079_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|750aa|up_6|NZ_CP022117.1_971130_973380_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP022117.1_973450_973807_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|388aa|up_4|NZ_CP022117.1_973850_975013_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|267aa|up_3|NZ_CP022117.1_977945_978746_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP022117.1_978973_980611_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP022117.1_980693_981992_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP022117.1_982127_982799_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP022117.1_983832_984630_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP022117.1_984719_985082_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP022117.1_985505_987305_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP022117.1_987304_989017_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP022117.1_989092_989827_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|349aa|down_5|NZ_CP022117.1_992871_993918_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_6|NZ_CP022117.1_994168_995077_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_7|NZ_CP022117.1_995086_996526_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_8|NZ_CP022117.1_996512_997118_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_9|NZ_CP022117.1_997135_997492_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)
GCF_002211585.1_ASM221158v1	NZ_CP022117	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 chromosome, complete genome	3	992219-992857	3,2	CRISPRCasFinder,CRT	no		cas3,WYL,csa3,cas14j,DEDDh,DinG	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	10,10	10	Orphan	cas3,WYL,csa3,cas14j,DEDDh,DinG,RT,c2c8_V-U2,c2c9_V-U4	NA,NA	NA|388aa|up_9|NZ_CP022117.1_973850_975013_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|267aa|up_8|NZ_CP022117.1_977945_978746_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_7|NZ_CP022117.1_978973_980611_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_6|NZ_CP022117.1_980693_981992_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_5|NZ_CP022117.1_982127_982799_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|up_4|NZ_CP022117.1_983832_984630_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_3|NZ_CP022117.1_984719_985082_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_2|NZ_CP022117.1_985505_987305_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_1|NZ_CP022117.1_987304_989017_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_0|NZ_CP022117.1_989092_989827_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|349aa|down_0|NZ_CP022117.1_992871_993918_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP022117.1_994168_995077_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP022117.1_995086_996526_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP022117.1_996512_997118_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP022117.1_997135_997492_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP022117.1_997682_997994_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP022117.1_998012_998723_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP022117.1_998722_999202_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP022117.1_999198_1000248_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP022117.1_1000228_1000990_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002211585.1_ASM221158v1	NZ_CP022119	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed2, complete sequence	1	12542-12622	1	CRISPRCasFinder	no			Orphan	TTCAATTTCGAAGAAATTGTTAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,cas14j,DEDDh,DinG,RT,c2c8_V-U2,c2c9_V-U4	NA|107aa|up_5|NZ_CP022119.1_8227_8548_+,NA|102aa|up_0|NZ_CP022119.1_12159_12465_+,NA|102aa|down_3|NZ_CP022119.1_17967_18273_+,NA|252aa|down_5|NZ_CP022119.1_20797_21553_+,NA|114aa|down_7|NZ_CP022119.1_22123_22465_+,NA|72aa|down_8|NZ_CP022119.1_22579_22795_-,NA|78aa|down_9|NZ_CP022119.1_22829_23063_-	NA|357aa|up_9|NZ_CP022119.1_4030_5101_+	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|228aa|up_8|NZ_CP022119.1_5321_6005_+	pfam04335, VirB8, VirB8 protein	NA|302aa|up_7|NZ_CP022119.1_6004_6910_+	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9	NA|421aa|up_6|NZ_CP022119.1_6953_8216_+	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS)	NA|107aa|up_5|NZ_CP022119.1_8227_8548_+	NA	NA|342aa|up_4|NZ_CP022119.1_8537_9563_+	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|133aa|up_3|NZ_CP022119.1_9559_9958_+	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|101aa|up_2|NZ_CP022119.1_9993_10296_+	PRK13893, PRK13893, conjugal transfer protein TrbM; Provisional	NA|563aa|up_1|NZ_CP022119.1_10402_12091_+	NF033478, YadA_autotrans, trimeric autotransporter adhesin YadA	NA|102aa|up_0|NZ_CP022119.1_12159_12465_+	NA	NA|133aa|down_0|NZ_CP022119.1_15367_15766_+	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|101aa|down_1|NZ_CP022119.1_15801_16104_+	PRK13893, PRK13893, conjugal transfer protein TrbM; Provisional	NA|563aa|down_2|NZ_CP022119.1_16210_17899_+	NF033478, YadA_autotrans, trimeric autotransporter adhesin YadA	NA|102aa|down_3|NZ_CP022119.1_17967_18273_+	NA	NA|579aa|down_4|NZ_CP022119.1_19052_20789_+	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|252aa|down_5|NZ_CP022119.1_20797_21553_+	NA	NA|158aa|down_6|NZ_CP022119.1_21589_22063_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|114aa|down_7|NZ_CP022119.1_22123_22465_+	NA	NA|72aa|down_8|NZ_CP022119.1_22579_22795_-	NA	NA|78aa|down_9|NZ_CP022119.1_22829_23063_-	NA
GCF_002211585.1_ASM221158v1	NZ_CP022119	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed2, complete sequence	2	18350-18430	2	CRISPRCasFinder	no			Orphan	TTCAATTTCGAAGAAATTGTTAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,csa3,cas14j,DEDDh,DinG,RT,c2c8_V-U2,c2c9_V-U4	NA|107aa|up_9|NZ_CP022119.1_8227_8548_+,NA|102aa|up_4|NZ_CP022119.1_12159_12465_+,NA|102aa|up_0|NZ_CP022119.1_17967_18273_+,NA|252aa|down_1|NZ_CP022119.1_20797_21553_+,NA|114aa|down_3|NZ_CP022119.1_22123_22465_+,NA|72aa|down_4|NZ_CP022119.1_22579_22795_-,NA|78aa|down_5|NZ_CP022119.1_22829_23063_-	NA|107aa|up_9|NZ_CP022119.1_8227_8548_+	NA	NA|342aa|up_8|NZ_CP022119.1_8537_9563_+	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|133aa|up_7|NZ_CP022119.1_9559_9958_+	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|101aa|up_6|NZ_CP022119.1_9993_10296_+	PRK13893, PRK13893, conjugal transfer protein TrbM; Provisional	NA|563aa|up_5|NZ_CP022119.1_10402_12091_+	NF033478, YadA_autotrans, trimeric autotransporter adhesin YadA	NA|102aa|up_4|NZ_CP022119.1_12159_12465_+	NA	NA|133aa|up_3|NZ_CP022119.1_15367_15766_+	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|101aa|up_2|NZ_CP022119.1_15801_16104_+	PRK13893, PRK13893, conjugal transfer protein TrbM; Provisional	NA|563aa|up_1|NZ_CP022119.1_16210_17899_+	NF033478, YadA_autotrans, trimeric autotransporter adhesin YadA	NA|102aa|up_0|NZ_CP022119.1_17967_18273_+	NA	NA|579aa|down_0|NZ_CP022119.1_19052_20789_+	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|252aa|down_1|NZ_CP022119.1_20797_21553_+	NA	NA|158aa|down_2|NZ_CP022119.1_21589_22063_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|114aa|down_3|NZ_CP022119.1_22123_22465_+	NA	NA|72aa|down_4|NZ_CP022119.1_22579_22795_-	NA	NA|78aa|down_5|NZ_CP022119.1_22829_23063_-	NA	NA|216aa|down_6|NZ_CP022119.1_23103_23751_-	cd02042, ParAB_family, partition proteins ParAB family	NA|261aa|down_7|NZ_CP022119.1_23871_24654_-	smart00731, SprT, SprT homologues	NA|94aa|down_8|NZ_CP022119.1_25031_25313_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|110aa|down_9|NZ_CP022119.1_25293_25623_-	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891)
