The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	0	18260	2516540		Planktothrix_phage(100.0%)	8	NA	NA
WP_011302795.1|612_1707_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_002482866.1|1782_3072_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_011302796.1|3154_3610_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_011302797.1|3616_4567_+	phosphoglycerate dehydrogenase	NA	NA	NA	NA	NA
WP_002482869.1|4662_5109_+	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_011302800.1|14385_15453_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_047502301.1|16081_17545_+	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA	NA
WP_002482873.1|17537_18260_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.0	4.3e-35
>prophage 2
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	23548	24376	2516540		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_011302808.1|23548_24376_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	26.2	6.9e-05
>prophage 3
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	42555	43293	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002482897.1|42555_43293_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.5e-24
>prophage 4
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	51488	87250	2516540	tRNA	Staphylococcus_phage(96.15%)	35	NA	NA
WP_041784790.1|51488_52871_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	61.3	5.3e-167
WP_011302825.1|52890_53895_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	49.4	2.9e-90
WP_011302826.1|53884_54136_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	81.1	4.2e-30
WP_011302827.1|54195_54672_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	53.5	4.8e-43
WP_011302828.1|54655_55447_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	71.8	6.4e-101
WP_011302829.1|55542_57132_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.8	8.5e-262
WP_011302830.1|57520_58717_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.6	1.8e-195
WP_011302831.1|58815_59724_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.8	1.1e-101
WP_011302832.1|59893_60730_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	68.2	4.2e-111
WP_011302833.1|61000_61357_-	CrcB family protein	NA	NA	NA	NA	NA
WP_011302834.1|61353_61719_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.8	3.3e-36
WP_011302835.1|61929_62235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011302836.1|62519_63233_+	transaldolase	NA	E3SKN5	Synechococcus_phage	36.3	2.9e-20
WP_172606398.1|63767_64250_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_011302838.1|64349_64799_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	47.5	1.3e-21
WP_011302839.1|64806_65232_-	competence protein ComK	NA	NA	NA	NA	NA
WP_011302840.1|65245_65716_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	43.7	2.9e-24
WP_011302841.1|65936_66161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002482919.1|66328_67180_+	glucosaminidase domain-containing protein	NA	A0A0E3T9J6	Staphylococcus_phage	43.3	1.7e-38
WP_011302846.1|69061_69988_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011302847.1|70162_71629_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	58.6	5.5e-13
WP_011302848.1|72170_73214_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	64.4	1.0e-130
WP_011302849.1|73220_73853_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	64.8	5.0e-72
WP_011302850.1|73864_75046_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	71.2	4.2e-165
WP_002482978.1|75059_75518_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	76.3	6.6e-58
WP_011302851.1|75782_76784_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	68.5	7.3e-126
WP_011302852.1|77050_77875_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011302853.1|78110_79067_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002482982.1|79218_79620_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011302854.1|79738_80299_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	63.8	9.5e-67
WP_011302855.1|80295_81249_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	83.3	7.3e-67
WP_011302856.1|81358_82528_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	77.4	2.0e-167
WP_011302857.1|83056_85471_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.6	0.0e+00
WP_002482987.1|85489_85801_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	4.5e-34
WP_011302858.1|85981_87250_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	77.2	1.5e-38
>prophage 5
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	97553	102801	2516540		Staphylococcus_phage(50.0%)	3	NA	NA
WP_002483000.1|97553_98417_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	89.1	2.1e-65
WP_002483001.1|98431_99031_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_011302869.1|99048_102801_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	44.1	5.4e-81
>prophage 6
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	111182	112892	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011302875.1|111182_112892_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	85.3	2.2e-239
>prophage 7
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	116711	119540	2516540	protease,tRNA	Serratia_phage(50.0%)	2	NA	NA
WP_011302879.1|116711_117974_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	41.2	1.3e-84
WP_011302880.1|118265_119540_-|protease	serine protease	protease	W5SAB9	Pithovirus	28.0	3.8e-10
>prophage 8
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	123410	127610	2516540		Staphylococcus_phage(50.0%)	4	NA	NA
WP_011302884.1|123410_125027_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	52.6	1.5e-59
WP_011302885.1|125019_126180_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_011302886.1|126345_126786_-	SACOL1771 family peroxiredoxin	NA	NA	NA	NA	NA
WP_011302887.1|126863_127610_+	glycerophosphoryl diester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	28.0	6.0e-08
>prophage 9
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	132322	136784	2516540	tRNA	Faustovirus(50.0%)	4	NA	NA
WP_011302891.1|132322_133459_+	cysteine desulfurase	NA	A0A1X7C038	Faustovirus	26.9	5.7e-26
WP_011302892.1|133455_134679_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_011302893.1|134733_135507_+	TSUP family transporter	NA	NA	NA	NA	NA
WP_011302894.1|135791_136784_+	signal peptide peptidase SppA	NA	K4I1N3	Providencia_phage	30.6	4.2e-17
>prophage 10
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	149235	152439	2516540		Streptomyces_phage(100.0%)	1	NA	NA
WP_011302906.1|149235_152439_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.8	8.0e-134
>prophage 11
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	157117	158878	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011302911.1|157117_158878_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	76.7	1.4e-31
>prophage 12
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	162126	169938	2516540		Bacillus_phage(40.0%)	5	NA	NA
WP_011302914.1|162126_163392_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	55.6	9.2e-09
WP_011302915.1|163814_164525_+	response regulator transcription factor	NA	A0A1J0GWE0	Alteromonas_phage	26.5	4.8e-07
WP_011302916.1|164524_166213_+	HAMP domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	36.3	4.6e-32
WP_011302917.1|166407_169038_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	32.7	2.3e-46
WP_011302918.1|169053_169938_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	F8WPX6	Bacillus_phage	30.1	7.8e-31
>prophage 13
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	173970	185300	2516540	protease,tRNA	Brevibacillus_phage(20.0%)	10	NA	NA
WP_011302923.1|173970_174894_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	30.7	1.6e-34
WP_011302924.1|175245_177183_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	37.4	1.3e-118
WP_002483062.1|177626_179117_+	amino acid permease	NA	NA	NA	NA	NA
WP_002483063.1|179329_179857_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	31.7	5.9e-10
WP_002483064.1|179885_180086_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_002483065.1|180137_180494_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_002483066.1|180820_181432_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	41.9	1.0e-21
WP_011302925.1|181444_182371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002483068.1|182540_183851_+	trigger factor	NA	NA	NA	NA	NA
WP_011302926.1|184037_185300_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.9	7.0e-142
>prophage 14
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	195211	197842	2516540	tRNA	Catovirus(100.0%)	1	NA	NA
WP_002483080.1|195211_197842_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	41.9	1.7e-158
>prophage 15
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	208944	245630	2516540	tRNA	uncultured_Mediterranean_phage(17.65%)	32	NA	NA
WP_002483095.1|208944_209949_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	1.7e-05
WP_011302949.1|209951_210977_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_011302950.1|210997_212143_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	2.5e-85
WP_011302951.1|212158_212419_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	7.4e-06
WP_011302952.1|212801_215078_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.6	1.7e-29
WP_011302953.1|215259_217539_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.4	3.8e-69
WP_002483102.1|217551_218070_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.2	6.6e-30
WP_002483103.1|218395_220585_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	39.1	3.1e-12
WP_011302954.1|220597_221050_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_011302955.1|221046_221922_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A067ZJB6	Vibrio_phage	30.4	3.9e-14
WP_011302956.1|222250_223513_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011302957.1|223525_225292_+|tRNA	aspartate--tRNA ligase	tRNA	K7Y9W2	Megavirus	40.2	1.9e-07
WP_011302959.1|225687_226458_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_011302960.1|226625_227909_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.5	1.7e-106
WP_002483110.1|227995_228415_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_002483111.1|228540_228723_+	CsbD family protein	NA	NA	NA	NA	NA
WP_011302961.1|228760_228931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011302962.1|229077_230076_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011302963.1|230369_230696_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_011302964.1|230864_232001_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	24.9	1.5e-18
WP_002483116.1|232061_233204_+	cysteine desulfurase	NA	A0A1X7C038	Faustovirus	28.0	1.6e-28
WP_011302965.1|233204_234317_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_011302966.1|234451_235117_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011302967.1|235120_237505_+	ATP-dependent RecD-like DNA helicase	NA	A0A1P8DII4	Virus_Rctr197k	27.1	4.5e-49
WP_011302968.1|237852_240483_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.0	3.8e-65
WP_002483121.1|240552_240813_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_011302969.1|240816_241245_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_002483123.1|241261_241594_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_002483124.1|242163_242805_+	O-methyltransferase	NA	NA	NA	NA	NA
WP_011302970.1|242801_243725_+	U32 family peptidase	NA	Q6DW11	Phage_TP	28.6	1.7e-20
WP_103301694.1|243780_245007_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.6	3.8e-36
WP_011302972.1|245006_245630_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	1.8e-34
>prophage 16
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	258730	271089	2516540		Bacillus_phage(20.0%)	10	NA	NA
WP_002483145.1|258730_259192_+	ComE operon protein 2	NA	F8WPT6	Bacillus_phage	55.1	1.4e-34
WP_011302988.1|259323_261405_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332B9	Clostridium_botulinum_C_phage	32.8	1.1e-27
WP_011302989.1|261476_262451_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_002483148.1|262567_262819_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_011302990.1|263143_264967_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	23.8	7.5e-20
WP_011302991.1|265063_266188_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_011302992.1|266288_267269_+	heat-inducible transcription repressor HrcA	NA	NA	NA	NA	NA
WP_002483152.1|267295_267907_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_002483153.1|267962_269807_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	46.6	7.6e-137
WP_011302993.1|269952_271089_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	27.6	1.4e-24
>prophage 17
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	276257	277205	2516540		Erwinia_phage(100.0%)	1	NA	NA
WP_002483161.1|276257_277205_+	PhoH family protein	NA	W8D063	Erwinia_phage	46.2	1.1e-46
>prophage 18
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	280383	294291	2516540	tRNA	Catovirus(28.57%)	13	NA	NA
WP_002483167.1|280383_281775_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SAN4	Catovirus	27.0	2.3e-45
WP_011303004.1|282112_282745_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011303005.1|282759_283581_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_011303006.1|283627_285412_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.6	1.8e-50
WP_011303007.1|285553_286660_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	2.4e-37
WP_011303008.1|286859_287537_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_011303009.1|287537_288641_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_011303010.1|288982_290323_+	DEAD/DEAH box helicase	NA	A0A1V0SBR7	Catovirus	34.0	1.1e-52
WP_011303011.1|290332_291223_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	32.1	6.9e-27
WP_011303012.1|291379_292153_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.5	1.2e-19
WP_011303013.1|292149_293010_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002483178.1|292999_293413_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_011303014.1|293691_294291_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	1.9e-60
>prophage 19
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	300460	301084	2516540		Streptococcus_phage(100.0%)	1	NA	NA
WP_011303020.1|300460_301084_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	34.7	2.0e-28
>prophage 20
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	306627	309445	2516540		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_011303028.1|306627_307980_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	38.1	5.0e-61
WP_011303029.1|307966_309445_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA	E3ST28	Prochlorococcus_phage	41.5	1.8e-80
>prophage 21
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	316600	319053	2516540		Indivirus(100.0%)	3	NA	NA
WP_011303037.1|316600_317938_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	38.9	7.1e-44
WP_011303038.1|317930_318176_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_011303039.1|318165_319053_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.6	2.1e-07
>prophage 22
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	323830	325252	2516540		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_011303043.1|323830_325252_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.4	1.1e-39
>prophage 23
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	331930	333340	2516540		Synechococcus_phage(100.0%)	1	NA	NA
WP_011303049.1|331930_333340_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	28.9	1.7e-27
>prophage 24
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	337626	339111	2516540		Cyanophage(100.0%)	1	NA	NA
WP_011303053.1|337626_339111_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.6	5.8e-79
>prophage 25
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	344374	354342	2516540		uncultured_Mediterranean_phage(28.57%)	11	NA	NA
WP_002483230.1|344374_345262_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.4	5.1e-38
WP_011303058.1|345330_345837_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_011303059.1|345928_346663_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	23.5	1.4e-09
WP_002483233.1|346646_347195_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	31.4	2.1e-10
WP_002483234.1|347187_347925_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_011303060.1|348051_348777_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	42.6	1.1e-46
WP_174887873.1|348757_350524_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	23.8	1.7e-21
WP_037538408.1|350951_351497_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002483238.1|351652_351901_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	4.9e-15
WP_011303062.1|352010_352970_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011303063.1|352962_354342_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	32.4	7.1e-55
>prophage 26
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	363299	366877	2516540		Bacillus_phage(50.0%)	5	NA	NA
WP_002483248.1|363299_363572_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	71.1	4.7e-27
WP_002483249.1|364025_364598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011303067.1|364599_365301_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_011303068.1|365327_366281_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_002483252.1|366427_366877_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	6.3e-29
>prophage 27
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	375691	382747	2516540	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_011303077.1|375691_376891_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.5	9.6e-40
WP_011303078.1|376883_377855_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_011303079.1|377881_380584_+	DEAD/DEAH box helicase family protein	NA	A0A1X9I5C8	Streptococcus_phage	28.0	3.9e-57
WP_011303080.1|380675_381968_+|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	30.0	1.3e-55
WP_002483266.1|382060_382747_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	34.9	4.2e-08
>prophage 28
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	386351	386978	2516540		Paenibacillus_phage(100.0%)	1	NA	NA
WP_011303083.1|386351_386978_-	Holliday junction resolvase RecU	NA	R9TMF8	Paenibacillus_phage	34.1	1.3e-24
>prophage 29
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	397219	413444	2516540		Staphylococcus_phage(37.5%)	21	NA	NA
WP_011303091.1|397219_398101_+	5'-3' exonuclease	NA	A0A1S6L2U4	Erwinia_phage	28.1	8.4e-17
WP_002483280.1|398376_398784_-	ribonuclease HI family protein	NA	NA	NA	NA	NA
WP_172606397.1|398955_399528_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002483282.1|399544_400249_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	25.1	4.2e-11
WP_011303093.1|400500_400695_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_011303094.1|400712_400970_+	NifU N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_011303095.1|400985_402104_+	virulence factor C	NA	NA	NA	NA	NA
WP_002483285.1|402141_402576_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_011303096.1|402867_403824_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	83.6	9.3e-163
WP_011303097.1|403918_404404_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	76.6	5.7e-68
WP_011303098.1|404414_405254_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	71.4	5.3e-45
WP_002483289.1|405384_405912_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002483290.1|405904_406333_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_011303099.1|406347_406848_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002483292.1|406847_407069_+	YozE family protein	NA	NA	NA	NA	NA
WP_011303100.1|407224_408700_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	29.9	1.1e-21
WP_011303101.1|408721_409231_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011303102.1|409241_410318_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_011303103.1|410330_410945_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_011303104.1|411429_412092_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.6	7.1e-37
WP_011303105.1|412088_413444_+	ATP-binding protein	NA	W8CYF6	Bacillus_phage	28.7	4.4e-25
>prophage 30
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	425510	429534	2516540		Staphylococcus_phage(50.0%)	5	NA	NA
WP_048787360.1|425510_426326_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	5.4e-10
WP_011303119.1|427140_427341_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303120.1|427558_428371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002483310.1|428385_428589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002483311.1|428742_429534_+	MoxR family ATPase	NA	R4TG24	Halovirus	26.8	2.8e-11
>prophage 31
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	433133	439407	2516540	lysis	Vibrio_phage(25.0%)	7	NA	NA
WP_011303124.1|433133_434765_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	21.6	1.7e-10
WP_011303125.1|434814_435948_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	26.7	2.9e-30
WP_011303126.1|435982_436603_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
WP_011303127.1|436616_436886_-	acylphosphatase	NA	NA	NA	NA	NA
WP_011303128.1|437232_437541_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_001831260.1|437728_437929_+	cold shock protein CspA	NA	Q9AZD3	Lactococcus_phage	64.6	2.5e-17
WP_011303129.1|438141_439407_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	22.7	2.6e-11
>prophage 32
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	446966	449618	2516540		Staphylococcus_phage(50.0%)	2	NA	NA
WP_011303137.1|446966_447797_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.3	4.6e-49
WP_002483328.1|448013_449618_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.2	2.1e-50
>prophage 33
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	454123	457523	2516540		Indivirus(50.0%)	3	NA	NA
WP_011303141.1|454123_454999_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.1	5.9e-15
WP_011303142.1|455006_455657_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_011303143.1|455711_457523_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	46.6	3.1e-151
>prophage 34
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	467274	469622	2516540		Acinetobacter_phage(100.0%)	3	NA	NA
WP_011303152.1|467274_468057_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	38.4	9.3e-28
WP_011303153.1|468040_469057_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	30.0	1.1e-31
WP_011303154.1|469025_469622_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	33.7	2.1e-24
>prophage 35
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	477670	478933	2516540		Bacillus_phage(100.0%)	1	NA	NA
WP_002483354.1|477670_478933_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	42.0	9.0e-89
>prophage 36
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	482960	484451	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011303168.1|482960_484451_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.5	1.5e-18
>prophage 37
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	490702	491803	2516540		Escherichia_coli_O157_typing_phage(100.0%)	1	NA	NA
WP_011303173.1|490702_491803_-	acyltransferase	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	23.5	9.2e-05
>prophage 38
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	495526	499920	2516540		Bacillus_virus(100.0%)	2	NA	NA
WP_011303177.1|495526_497929_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.7	5.5e-103
WP_103301490.1|497925_499920_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.4	7.7e-119
>prophage 39
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	504983	506627	2516540		Vibrio_phage(100.0%)	1	NA	NA
WP_011303181.1|504983_506627_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	26.0	3.6e-21
>prophage 40
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	510353	511484	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011303184.1|510353_511484_-	exonuclease SbcCD subunit D	NA	A1YTR7	Staphylococcus_phage	24.7	6.1e-12
>prophage 41
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	516385	523663	2516540	transposase	Phage_Wrath(20.0%)	9	NA	NA
WP_011303190.1|516385_517009_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	4.5e-17
WP_011303191.1|517208_518231_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	40.7	2.4e-15
WP_011303192.1|518234_519221_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	90.5	4.7e-170
WP_011303193.1|519410_519680_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_011303194.1|519895_520045_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_011302314.1|520220_521219_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.6	2.5e-54
WP_011303195.1|521281_522097_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_011303196.1|522093_522888_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_041784901.1|522889_523663_-	phosphonate ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	26.6	6.2e-08
>prophage 42
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	530166	531654	2516540		Tupanvirus(100.0%)	1	NA	NA
WP_011303203.1|530166_531654_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.9	3.3e-90
>prophage 43
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	542331	546599	2516540		Bacillus_phage(50.0%)	6	NA	NA
WP_011303214.1|542331_542862_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	48.1	4.0e-22
WP_011303215.1|543033_543225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037538489.1|543306_543909_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011303216.1|543908_545000_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_011303217.1|544996_545731_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011303218.1|545732_546599_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	3.6e-20
>prophage 44
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	552256	552730	2516540		Canarypox_virus(100.0%)	1	NA	NA
WP_011303223.1|552256_552730_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	40.1	1.3e-24
>prophage 45
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	558757	566176	2516540		Acanthocystis_turfacea_Chlorella_virus(33.33%)	5	NA	NA
WP_106003898.1|558757_559576_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	36.4	4.2e-31
WP_011303230.1|559747_560782_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_002483421.1|560987_561521_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_011303231.1|561532_563500_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.9	2.1e-60
WP_011303232.1|563512_566176_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	25.3	2.5e-40
>prophage 46
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	571327	571954	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011303239.1|571327_571954_-	poly-gamma-glutamate hydrolase family protein	NA	A0A0D3MVF0	Staphylococcus_phage	38.2	1.9e-39
>prophage 47
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	578240	579290	2516540		Bacillus_phage(100.0%)	1	NA	NA
WP_002483436.1|578240_579290_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	65.0	2.7e-123
>prophage 48
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	583773	589532	2516540		Bacillus_virus(33.33%)	4	NA	NA
WP_011303246.1|583773_585066_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	22.1	4.7e-16
WP_041784815.1|585065_586355_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	25.7	1.1e-38
WP_011303248.1|586365_587079_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011303249.1|587081_589532_-	cell division protein FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	9.0e-85
>prophage 49
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	599983	609001	2516540		Bodo_saltans_virus(50.0%)	6	NA	NA
WP_011303257.1|599983_602089_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	25.8	3.3e-19
WP_002483455.1|602093_602411_-	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_002483456.1|602407_602692_-	YlxR family protein	NA	NA	NA	NA	NA
WP_002483457.1|602709_603903_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_002483458.1|603926_604394_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_011303258.1|604684_609001_-	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	40.7	3.6e-20
>prophage 50
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	613537	614302	2516540		Flavobacterium_phage(100.0%)	1	NA	NA
WP_011303261.1|613537_614302_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	44.4	3.5e-27
>prophage 51
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	618755	629720	2516540	protease,tRNA	Erwinia_phage(20.0%)	9	NA	NA
WP_011303264.1|618755_620168_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	27.0	3.6e-30
WP_172606396.1|620280_620826_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_011303266.1|620826_621717_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	30.5	1.1e-27
WP_011303267.1|621835_623143_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_011303268.1|623297_625364_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	38.8	1.5e-104
WP_011303269.1|625566_626442_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_011303270.1|626748_627654_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.9e-17
WP_011303271.1|627675_628842_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_011303272.1|628949_629720_-	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	42.6	5.0e-26
>prophage 52
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	647887	650061	2516540		Acanthamoeba_polyphaga_moumouvirus(33.33%)	3	NA	NA
WP_011303283.1|647887_648622_-	ribonuclease III	NA	L7RCJ8	Acanthamoeba_polyphaga_moumouvirus	32.2	3.4e-24
WP_002483492.1|648849_649083_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	61.7	3.5e-07
WP_002483493.1|649326_650061_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.9	1.6e-16
>prophage 53
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	663562	665617	2516540		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_011303296.1|663562_665617_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	L7RGQ5	Acanthamoeba_polyphaga_moumouvirus	32.1	4.8e-23
>prophage 54
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	668766	669699	2516540	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_002483511.1|668766_669699_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.0	5.6e-11
>prophage 55
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	674223	681159	2516540		Methanothermobacter_phage(25.0%)	8	NA	NA
WP_011303302.1|674223_675432_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	33.1	4.2e-43
WP_011303303.1|675668_675881_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_011303304.1|675880_676504_-	guanylate kinase	NA	A0A1G5SA47	Enterococcus_phage	23.6	6.8e-05
WP_011303305.1|676663_678361_+	fibronectin-binding domain-containing protein	NA	A0A0P0YM59	Yellowstone_lake_phycodnavirus	33.3	1.7e-05
WP_011303306.1|678463_678871_-	VOC family protein	NA	NA	NA	NA	NA
WP_011303307.1|678963_679818_-	YitT family protein	NA	NA	NA	NA	NA
WP_011303308.1|680339_680525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303309.1|680547_681159_-	orotate phosphoribosyltransferase	NA	S4W4D9	Pandoravirus	36.4	3.4e-25
>prophage 56
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	685115	689730	2516540		Halovirus(33.33%)	4	NA	NA
WP_011303312.1|685115_686216_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	34.8	7.4e-63
WP_011303313.1|686215_687490_-	dihydroorotase	NA	NA	NA	NA	NA
WP_011303314.1|687486_688389_-	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	31.4	1.0e-25
WP_002483529.1|688422_689730_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	35.0	8.5e-58
>prophage 57
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	693662	696413	2516540	tRNA	Klosneuvirus(100.0%)	1	NA	NA
WP_011303319.1|693662_696413_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	27.8	2.0e-88
>prophage 58
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	719875	727154	2516540	transposase	uncultured_Caudovirales_phage(40.0%)	8	NA	NA
WP_103314661.1|719875_722233_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	44.9	6.2e-160
WP_011303341.1|722425_722740_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011303342.1|722880_723789_-|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	43.5	8.0e-47
WP_011303343.1|723749_724433_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_115340783.1|724516_724594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303346.1|725668_726079_-	YolD-like family protein	NA	A0A2H4JEH6	uncultured_Caudovirales_phage	89.7	2.4e-67
WP_011303347.1|726088_726280_-	hypothetical protein	NA	A0A2H4JGI3	uncultured_Caudovirales_phage	95.2	7.0e-30
WP_011303348.1|726479_727154_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	5.4e-125
>prophage 59
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	734915	738467	2516540		Acanthamoeba_polyphaga_mimivirus(50.0%)	2	NA	NA
WP_011303359.1|734915_736064_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2L2DIY2	Acanthamoeba_polyphaga_mimivirus	27.3	2.2e-09
WP_011303360.1|736205_738467_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	35.8	1.5e-102
>prophage 60
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	744327	746064	2516540		Staphylococcus_phage(50.0%)	2	NA	NA
WP_011303368.1|744327_744723_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	85.5	8.5e-62
WP_011303369.1|745050_746064_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	22.9	3.9e-10
>prophage 61
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	749699	755585	2516540	integrase,transposase	Moumouvirus(25.0%)	6	746852:746866	756307:756321
746852:746866	attL	CAAATGAAACAATAT	NA	NA	NA	NA
WP_172606395.1|749699_750656_-	alpha/beta hydrolase fold domain-containing protein	NA	A0A2P1EM31	Moumouvirus	39.3	6.0e-61
WP_011303375.1|751368_752307_-	replication initiator protein A	NA	NA	NA	NA	NA
WP_011303376.1|752465_753140_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_011303377.1|753271_754000_+|integrase	site-specific integrase	integrase	A0A2H4J2K7	uncultured_Caudovirales_phage	62.8	1.0e-84
WP_011303378.1|754494_755004_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_011303379.1|755000_755585_-	XTP/dITP diphosphatase	NA	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	30.5	5.2e-15
756307:756321	attR	ATATTGTTTCATTTG	NA	NA	NA	NA
>prophage 62
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	762170	766637	2516540		Staphylococcus_phage(33.33%)	3	NA	NA
WP_011303383.1|762170_762485_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	47.6	6.6e-25
WP_011303384.1|762566_764915_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	24.9	3.0e-13
WP_011303385.1|764924_766637_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	26.8	1.7e-18
>prophage 63
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	771478	772537	2516540	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_002483641.1|771478_772537_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	37.9	1.9e-31
>prophage 64
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	777155	780061	2516540		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_011303393.1|777155_777641_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.4	7.1e-26
WP_011303394.1|777642_778185_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_011303395.1|778254_778644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011303396.1|778754_779006_-	DUF2129 domain-containing protein	NA	NA	NA	NA	NA
WP_011303397.1|779137_780061_+	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	25.5	1.9e-11
>prophage 65
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	793995	795843	2516540		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_002483661.1|793995_795843_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	23.5	3.1e-21
>prophage 66
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	804150	812968	2516540		Mycoplasma_phage(25.0%)	9	NA	NA
WP_011303413.1|804150_805245_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	43.5	8.2e-38
WP_011303414.1|805257_805797_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002483673.1|805938_806217_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_002483674.1|806449_807856_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.7	3.3e-47
WP_011303415.1|807859_809161_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_002483676.1|809305_810283_-	alpha-ketoacid dehydrogenase subunit beta	NA	A0A0K0KW14	Prochlorococcus_phage	24.8	3.9e-07
WP_002483677.1|810286_811399_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA	NA
WP_011303416.1|811665_812292_-	YkyA family protein	NA	NA	NA	NA	NA
WP_011303417.1|812416_812968_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.7	4.9e-15
>prophage 67
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	823369	824539	2516540		Streptococcus_phage(100.0%)	1	NA	NA
WP_011303426.1|823369_824539_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.6	4.7e-76
>prophage 68
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	827645	842249	2516540		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_041784911.1|827645_829058_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	2.5e-15
WP_011303430.1|829050_829857_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_011303431.1|829949_831194_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_011303432.1|831218_832697_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.2	3.2e-77
WP_011303433.1|832712_833279_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.2	9.7e-27
WP_011303434.1|833281_834310_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.5	4.6e-67
WP_011303435.1|834302_835790_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.6e-44
WP_011303436.1|835768_837958_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.6	1.4e-137
WP_011303437.1|837950_838622_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_011303438.1|838621_838882_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_011303439.1|838884_839586_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SE76	Cyanophage	42.5	6.8e-46
WP_011303440.1|839590_840718_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_011303441.1|840704_841187_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	2.6e-20
WP_011303442.1|841391_842249_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.6	3.5e-36
>prophage 69
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	851009	852668	2516540		Streptococcus_phage(100.0%)	1	NA	NA
WP_011303449.1|851009_852668_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	36.3	9.3e-94
>prophage 70
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	855759	860151	2516540		Staphylococcus_virus(100.0%)	1	NA	NA
WP_011303453.1|855759_860151_+	SH3-like domain-containing protein	NA	Q4ZE13	Staphylococcus_virus	46.2	4.3e-53
>prophage 71
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	879168	884056	2516540	protease	Pithovirus(33.33%)	3	NA	NA
WP_011303469.1|879168_880962_-|protease	serine protease	protease	W5SAB9	Pithovirus	26.6	3.8e-08
WP_011303470.1|881333_882134_-	TerC family protein	NA	S5MAL1	Bacillus_phage	38.4	6.6e-29
WP_002483741.1|882493_884056_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	30.8	4.8e-15
>prophage 72
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	903813	905622	2516540		Streptococcus_phage(100.0%)	1	NA	NA
WP_002483762.1|903813_905622_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.2	1.1e-47
>prophage 73
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	911390	913407	2516540		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_011303489.1|911390_912335_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	25.1	5.4e-06
WP_011303490.1|912324_913407_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.4	1.1e-21
>prophage 74
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	920550	925380	2516540		Cronobacter_phage(50.0%)	2	NA	NA
WP_011303496.1|920550_923160_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	37.3	2.9e-118
WP_011303497.1|923547_925380_-	acetyltransferase	NA	A0A166XZF2	Gordonia_phage	30.0	3.1e-29
>prophage 75
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	931060	934720	2516540		Bacillus_virus(100.0%)	1	NA	NA
WP_011303503.1|931060_934720_-	helicase-exonuclease AddAB subunit AddA	NA	G3MA40	Bacillus_virus	24.8	7.2e-22
>prophage 76
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	944991	951651	2516540		Staphylococcus_phage(33.33%)	6	NA	NA
WP_011303511.1|944991_945981_+	glycerophosphodiester phosphodiesterase	NA	I6XE30	Staphylococcus_phage	34.7	1.1e-30
WP_011303512.1|946084_947329_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_002483795.1|947439_948630_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.8	5.0e-33
WP_011303513.1|949002_950136_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_002483797.1|950369_950750_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002483798.1|951057_951651_-	peptidylprolyl isomerase	NA	A0A076FI46	Aureococcus_anophage	40.0	1.6e-24
>prophage 77
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	961849	965375	2516540		Mycoplasma_phage(50.0%)	3	NA	NA
WP_011303522.1|961849_963331_-	leucyl aminopeptidase family protein	NA	Q6GYZ8	Mycoplasma_phage	36.6	5.3e-48
WP_011303523.1|963572_964781_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011303524.1|965015_965375_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	41.6	4.9e-16
>prophage 78
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	969564	972239	2516540		Pseudomonas_phage(50.0%)	2	NA	NA
WP_011303527.1|969564_970779_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	28.7	2.1e-18
WP_011303528.1|970775_972239_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.3	2.1e-36
>prophage 79
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	979245	980094	2516540		Kurlavirus(100.0%)	1	NA	NA
WP_011303535.1|979245_980094_-	DUF72 domain-containing protein	NA	A0A1S5XY79	Kurlavirus	29.0	2.5e-18
>prophage 80
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	985226	988794	2516540		environmental_halophage(50.0%)	3	NA	NA
WP_002483836.1|985226_986474_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	43.6	9.8e-104
WP_011303540.1|986623_987931_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_002483838.1|988032_988794_-	Fe-S cluster assembly ATPase SufC	NA	A0A285PWH2	Cedratvirus	26.4	3.2e-09
>prophage 81
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	993612	997216	2516540		Planktothrix_phage(50.0%)	6	NA	NA
WP_011303544.1|993612_994638_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.2	7.7e-30
WP_011303545.1|994889_995189_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_011303546.1|995185_995578_-	topiosmerase	NA	NA	NA	NA	NA
WP_011303547.1|995843_996224_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_011303548.1|996396_996753_-	arsenate reductase family protein	NA	NA	NA	NA	NA
WP_011303549.1|996895_997216_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	35.4	4.0e-09
>prophage 82
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1018949	1025299	2516540		Staphylococcus_phage(33.33%)	6	NA	NA
WP_011303579.1|1018949_1019414_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	92.9	1.2e-75
WP_011303580.1|1019436_1021827_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.4	2.4e-90
WP_011303581.1|1021865_1022606_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_011303582.1|1022739_1022973_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_011303583.1|1023041_1023503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303585.1|1023994_1025299_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	78.4	1.1e-190
>prophage 83
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1034657	1058876	2516540	integrase,terminase	uncultured_Caudovirales_phage(43.75%)	25	1046723:1046738	1053191:1053206
WP_002483889.1|1034657_1035242_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.8	3.7e-53
WP_011303596.1|1037341_1037797_-	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	63.3	2.0e-38
WP_011303598.1|1039153_1039546_-	YolD-like family protein	NA	A0A2H4JEH6	uncultured_Caudovirales_phage	85.2	6.0e-60
WP_011303599.1|1039940_1040288_-	hypothetical protein	NA	A0A2H4JEH8	uncultured_Caudovirales_phage	38.1	2.1e-11
WP_011303600.1|1040280_1040607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303601.1|1040603_1041140_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	53.1	3.4e-45
WP_011303602.1|1041157_1041418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303603.1|1041484_1041991_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4J4D1	uncultured_Caudovirales_phage	63.6	1.1e-48
WP_077461048.1|1041996_1042410_-	DUF3102 domain-containing protein	NA	A0A2H4J577	uncultured_Caudovirales_phage	55.8	1.1e-19
WP_011303606.1|1043973_1044429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303607.1|1044441_1045080_-	hypothetical protein	NA	A0A2H4JFF8	uncultured_Caudovirales_phage	54.2	4.0e-53
WP_011303609.1|1045261_1045726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303610.1|1046266_1048609_-	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	36.8	5.9e-118
1046723:1046738	attL	AAAATCTGCATTAAAC	NA	NA	NA	NA
WP_011303611.1|1048695_1049004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303612.1|1049003_1049195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303613.1|1049204_1049465_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_011303614.1|1049482_1050106_-	phage repressor protein	NA	A0A1W6JPC3	Staphylococcus_phage	53.8	1.9e-55
WP_011303615.1|1050102_1050324_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011303616.1|1050485_1051310_+	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	26.7	3.9e-08
WP_011303617.1|1051319_1052369_+|integrase	site-specific integrase	integrase	U3PJ31	Staphylococcus_phage	40.2	1.5e-68
WP_011303619.1|1053595_1054441_-	YitT family protein	NA	NA	NA	NA	NA
1053191:1053206	attR	AAAATCTGCATTAAAC	NA	NA	NA	NA
WP_011303620.1|1054679_1055624_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	2.4e-54
WP_011303621.1|1055662_1056673_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	40.8	6.2e-48
WP_011303622.1|1056659_1057586_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	37.0	1.4e-09
WP_002483895.1|1057931_1058876_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.5	9.4e-83
>prophage 84
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1062967	1065805	2516540		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_011303627.1|1062967_1065805_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.1	1.8e-310
>prophage 85
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1069396	1070350	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011303629.1|1069396_1070350_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A220BXB4	Staphylococcus_phage	41.3	1.2e-08
>prophage 86
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1076195	1079228	2516540		Streptococcus_phage(100.0%)	3	NA	NA
WP_046199700.1|1076195_1077533_-	DNA/RNA helicase	NA	A0A1X9I5S6	Streptococcus_phage	33.3	2.4e-47
WP_002483910.1|1077554_1078418_-	DegV family protein	NA	NA	NA	NA	NA
WP_011303635.1|1078586_1079228_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	43.7	2.0e-36
>prophage 87
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1091703	1117167	2516540		uncultured_Caudovirales_phage(26.67%)	19	NA	NA
WP_011303645.1|1091703_1092504_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.4	1.2e-14
WP_011303646.1|1092500_1093460_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_011303647.1|1093449_1094418_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.3	2.6e-136
WP_002483928.1|1094831_1095800_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	94.4	2.2e-175
WP_011303648.1|1095923_1098029_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	89.9	0.0e+00
WP_002483930.1|1097991_1098390_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	8.6e-54
WP_011303649.1|1099116_1100004_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002483932.1|1100017_1100518_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	2.0e-52
WP_011303650.1|1100700_1102215_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.8	9.5e-69
WP_011303651.1|1102585_1104091_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	6.3e-65
WP_011303653.1|1104560_1105508_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	23.6	1.5e-11
WP_002483937.1|1105678_1106227_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	39.0	2.0e-29
WP_011303654.1|1106404_1107460_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	27.2	2.3e-21
WP_002483939.1|1107618_1109136_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_011303655.1|1109132_1110095_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.5	4.8e-26
WP_011303656.1|1110400_1112179_-	DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	36.8	5.9e-78
WP_011303657.1|1112192_1114076_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.4	1.1e-53
WP_011303658.1|1114188_1115007_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_011303659.1|1115226_1117167_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.1	5.0e-107
>prophage 88
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1120482	1128032	2516540		Pandoravirus(16.67%)	9	NA	NA
WP_011303663.1|1120482_1121625_-	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	36.7	5.4e-24
WP_011303664.1|1121608_1122202_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	41.5	1.9e-36
WP_002483950.1|1122457_1123129_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	54.9	1.2e-63
WP_011303665.1|1123130_1123556_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002483952.1|1123548_1124265_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.4	2.5e-51
WP_011303666.1|1124505_1125099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002483954.1|1125167_1125419_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_011303667.1|1125636_1126698_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	42.3	8.7e-61
WP_002483956.1|1127192_1128032_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.2e-52
>prophage 89
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1135743	1136613	2516540		Bacillus_phage(100.0%)	1	NA	NA
WP_011303674.1|1135743_1136613_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	51.5	1.9e-77
>prophage 90
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1143708	1152991	2516540		Indivirus(25.0%)	9	NA	NA
WP_011303681.1|1143708_1144617_-	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	25.9	1.1e-11
WP_011303682.1|1144650_1145577_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_011303683.1|1145803_1146247_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011303684.1|1146455_1148135_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	23.6	8.7e-15
WP_011303685.1|1148131_1149763_-	ABC transporter ATP-binding protein/permease	NA	A0A2K9L0W2	Tupanvirus	29.9	5.0e-15
WP_002483975.1|1150042_1150918_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_047502760.1|1151251_1151953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002483977.1|1151957_1152422_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_011303688.1|1152424_1152991_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.2	8.3e-18
>prophage 91
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1163766	1165640	2516540		uncultured_virus(50.0%)	2	NA	NA
WP_011303699.1|1163766_1164879_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	42.9	6.7e-80
WP_011303700.1|1165133_1165640_-	cupin domain-containing protein	NA	A0A291ATU0	Pandoravirus	35.0	4.1e-16
>prophage 92
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1177988	1179020	2516540		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_011303712.1|1177988_1179020_-	alpha/beta hydrolase	NA	A0A0G2Y6Q1	Acanthamoeba_polyphaga_mimivirus	26.0	2.8e-16
>prophage 93
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1185496	1193517	2516540		Klosneuvirus(25.0%)	6	NA	NA
WP_002484014.1|1185496_1186300_-	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	28.6	1.1e-15
WP_002484015.1|1186615_1187452_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	35.5	2.2e-43
WP_011303719.1|1188100_1189330_-	nucleoside permease	NA	NA	NA	NA	NA
WP_011303720.1|1189715_1191434_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	40.9	8.1e-109
WP_011303721.1|1191658_1192954_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_002484019.1|1193118_1193517_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	1.7e-17
>prophage 94
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1200978	1201701	2516540		Cedratvirus(100.0%)	1	NA	NA
WP_011303729.1|1200978_1201701_+	metal ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	27.7	1.9e-11
>prophage 95
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1227914	1231604	2516540		Cafeteria_roenbergensis_virus(50.0%)	4	NA	NA
WP_172606394.1|1227914_1229234_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	28.8	9.9e-22
WP_011303754.1|1229252_1229732_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011303755.1|1229865_1230408_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_011303756.1|1230668_1231604_-	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	23.1	3.7e-07
>prophage 96
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1245518	1246175	2516540		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_011303771.1|1245518_1246175_-	uracil-DNA glycosylase	NA	U5U481	Elephant_endotheliotropic_herpesvirus	47.7	2.2e-46
>prophage 97
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1251326	1252739	2516540		Burkholderia_virus(100.0%)	1	NA	NA
WP_011303778.1|1251326_1252739_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.2	5.0e-56
>prophage 98
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1264318	1264981	2516540		Enterococcus_phage(100.0%)	1	NA	NA
WP_011303790.1|1264318_1264981_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	34.1	2.4e-24
>prophage 99
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1287411	1288194	2516540		Escherichia_phage(100.0%)	1	NA	NA
WP_011303812.1|1287411_1288194_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	28.6	2.5e-17
>prophage 100
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1292512	1293310	2516540		Salmonella_phage(100.0%)	1	NA	NA
WP_103314639.1|1292512_1293310_-	class A beta-lactamase	NA	A0A1B0VBP7	Salmonella_phage	35.4	8.9e-34
>prophage 101
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1308334	1309525	2516540		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_002484151.1|1308334_1309525_-	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	31.2	4.1e-43
>prophage 102
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1312689	1323674	2516540		Streptococcus_phage(33.33%)	6	NA	NA
WP_011303836.1|1312689_1314780_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.4	1.3e-63
WP_002484155.1|1314899_1315370_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_002484156.1|1315440_1315854_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_011303837.1|1315948_1316203_-	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_162009579.1|1316359_1319956_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.7	9.5e-67
WP_011303839.1|1320122_1323674_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	23.1	1.5e-48
>prophage 103
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1327739	1332598	2516540	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_011303841.1|1327739_1328288_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	32.9	3.8e-12
WP_011303842.1|1328302_1328482_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_011303843.1|1328610_1328754_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_011303844.1|1328884_1329460_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_011303845.1|1329534_1330056_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_002484171.1|1330052_1330802_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_011303846.1|1330809_1331196_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_002484173.1|1331197_1332598_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	30.6	5.0e-56
>prophage 104
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1338279	1340742	2516540	protease	Enterobacteria_phage(100.0%)	1	NA	NA
WP_011303851.1|1338279_1340742_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	40.3	5.8e-132
>prophage 105
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1345784	1347164	2516540		Streptococcus_phage(100.0%)	1	NA	NA
WP_011303858.1|1345784_1347164_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.4	1.5e-20
>prophage 106
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1359162	1369420	2516540	protease,tRNA	Catovirus(20.0%)	9	NA	NA
WP_011303859.1|1359162_1360650_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	40.6	5.1e-91
WP_011303860.1|1361172_1361652_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_011303861.1|1361648_1362017_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_011303862.1|1361994_1362798_-	dihydropteroate synthase	NA	NA	NA	NA	NA
WP_002484190.1|1363019_1363952_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	63.7	1.0e-105
WP_002484191.1|1364107_1364989_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_011303863.1|1365195_1367286_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	H8ZJI5	Ostreococcus_tauri_virus	49.0	4.2e-107
WP_011303864.1|1367580_1368120_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	1.4e-11
WP_011303865.1|1368124_1369420_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	M1I2W1	Paramecium_bursaria_Chlorella_virus	24.3	1.1e-09
>prophage 107
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1378606	1383319	2516540		Hokovirus(50.0%)	5	NA	NA
WP_011303871.1|1378606_1379572_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.5	1.5e-48
WP_011303872.1|1379719_1381075_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	NA	NA	NA	NA
WP_011303873.1|1381730_1382036_-	septation regulator SpoVG	NA	NA	NA	NA	NA
WP_002484206.1|1382100_1382475_-	RidA family protein	NA	NA	NA	NA	NA
WP_002484207.1|1382494_1383319_-	pur operon repressor	NA	A0A1V0SKE5	Klosneuvirus	25.3	3.0e-08
>prophage 108
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1387277	1390400	2516540	tRNA	Klosneuvirus(50.0%)	2	NA	NA
WP_011303878.1|1387277_1389254_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.4	1.5e-93
WP_002484214.1|1389563_1390400_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	48.0	9.9e-60
>prophage 109
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1394069	1394687	2516540		Streptococcus_phage(100.0%)	1	NA	NA
WP_011303882.1|1394069_1394687_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	1.0e-45
>prophage 110
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1402819	1405122	2516540		Streptococcus_virus(50.0%)	2	NA	NA
WP_011303884.1|1402819_1404532_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	41.9	9.7e-54
WP_002484226.1|1404591_1405122_-	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	40.0	1.2e-29
>prophage 111
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1419265	1424002	2516540		Ostreococcus_tauri_virus(33.33%)	5	NA	NA
WP_011303890.1|1419265_1420510_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	30.9	4.9e-39
WP_011303891.1|1420620_1421502_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002484239.1|1421703_1421982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011303892.1|1422075_1423059_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A7NU10	Lactobacillus_phage	43.8	1.2e-27
WP_011303893.1|1423222_1424002_-	arylamine N-acetyltransferase	NA	H2ED69	Moumouvirus	33.7	1.0e-05
>prophage 112
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1435210	1437884	2516540		Staphylococcus_phage(50.0%)	3	NA	NA
WP_103314697.1|1435210_1435867_+	poly-gamma-glutamate hydrolase family protein	NA	A0A0D3MVF0	Staphylococcus_phage	42.1	1.5e-39
WP_046199701.1|1435932_1437105_-	MFS transporter	NA	NA	NA	NA	NA
WP_011303908.1|1437371_1437884_-	GrpB family protein	NA	A0A2K5B2B6	Erysipelothrix_phage	57.1	4.8e-49
>prophage 113
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1441910	1442111	2516540		Lactococcus_phage(100.0%)	1	NA	NA
WP_011303913.1|1441910_1442111_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	1.7e-18
>prophage 114
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1448624	1451655	2516540		Hokovirus(50.0%)	2	NA	NA
WP_011303923.1|1448624_1450166_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	31.6	1.8e-22
WP_002484264.1|1450188_1451655_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.9	7.2e-98
>prophage 115
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1460312	1463236	2516540		Clostridium_phage(50.0%)	3	NA	NA
WP_011303930.1|1460312_1460666_+	helix-turn-helix domain-containing protein	NA	A0A0A7RUJ5	Clostridium_phage	42.2	4.1e-07
WP_002484274.1|1461126_1461696_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_011303931.1|1461712_1463236_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	34.9	2.4e-43
>prophage 116
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1471805	1479759	2516540		Erysipelothrix_phage(33.33%)	10	NA	NA
WP_011303943.1|1471805_1473128_-	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	48.9	4.1e-108
WP_011303944.1|1473114_1473549_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_011303945.1|1473721_1474126_-	SRPBCC domain-containing protein	NA	NA	NA	NA	NA
WP_011303946.1|1474312_1474687_+	VOC family protein	NA	NA	NA	NA	NA
WP_011303947.1|1475053_1475800_+	poly-gamma-glutamate hydrolase family protein	NA	A0A2H4JHA0	uncultured_Caudovirales_phage	43.4	1.3e-39
WP_011303948.1|1475939_1477244_+	potassium transporter KtrB	NA	NA	NA	NA	NA
WP_011303949.1|1477287_1477695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011303950.1|1477805_1478216_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_011303951.1|1478246_1478390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011303952.1|1478460_1479759_-	LysM peptidoglycan-binding domain-containing protein	NA	M1HNA7	Bacillus_virus	52.0	1.6e-16
>prophage 117
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1485049	1487114	2516540		Staphylococcus_phage(50.0%)	3	NA	NA
WP_002484307.1|1485049_1485562_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	68.2	6.3e-57
WP_011303966.1|1485580_1485886_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_011303967.1|1486307_1487114_+	lysozyme	NA	A0A2P0ZKX1	Lactobacillus_phage	41.3	4.5e-33
>prophage 118
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1497380	1507347	2516540		Staphylococcus_phage(75.0%)	9	NA	NA
WP_011303974.1|1497380_1498673_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	80.5	3.3e-187
WP_011303975.1|1498672_1498987_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	72.1	8.0e-39
WP_011303976.1|1499200_1499764_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011303977.1|1499837_1500302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011303978.1|1500482_1500947_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_011303979.1|1501227_1501839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011303980.1|1501907_1503479_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	33.5	4.0e-70
WP_011303982.1|1503987_1505391_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_041784852.1|1506321_1507347_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.3	2.2e-29
>prophage 119
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1511088	1512900	2516540		Freshwater_phage(50.0%)	2	NA	NA
WP_011303992.1|1511088_1511703_-	adenylyl-sulfate kinase	NA	A0A1B0XTK9	Freshwater_phage	38.6	2.6e-09
WP_011303993.1|1511721_1512900_-	sulfate adenylyltransferase	NA	A0A2K9L4R9	Tupanvirus	31.8	1.4e-51
>prophage 120
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1523174	1525741	2516540		Gordonia_phage(50.0%)	2	NA	NA
WP_011304002.1|1523174_1524023_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	29.3	2.1e-09
WP_002484347.1|1524637_1525741_+	PLP-dependent transferase	NA	A0A0B5JD48	Pandoravirus	27.0	2.1e-09
>prophage 121
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1541679	1543206	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011304014.1|1541679_1543206_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	26.7	2.4e-35
>prophage 122
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1548896	1549730	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011304020.1|1548896_1549730_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	65.7	1.2e-105
>prophage 123
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1556858	1557698	2516540		Gordonia_phage(100.0%)	1	NA	NA
WP_002481957.1|1556858_1557698_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHY8	Gordonia_phage	33.1	8.0e-09
>prophage 124
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1567926	1576975	2516540	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_172606401.1|1567926_1569861_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	5.1e-144
WP_011302013.1|1569896_1572590_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	34.8	1.4e-115
WP_011302014.1|1572651_1573464_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_011302015.1|1573860_1575360_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	40.5	8.2e-97
WP_011302016.1|1575691_1576975_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.6	5.4e-89
>prophage 125
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1583214	1587495	2516540		Streptococcus_phage(33.33%)	3	NA	NA
WP_037537355.1|1583214_1584615_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.6	1.1e-111
WP_011302022.1|1584910_1586194_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.9	2.1e-69
WP_011302023.1|1586283_1587495_-	glycosyltransferase	NA	Q0IKX4	Leucania_separata_nucleopolyhedrovirus	25.5	5.5e-11
>prophage 126
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1590862	1607177	2516540		Bacillus_phage(42.86%)	16	NA	NA
WP_002481985.1|1590862_1591564_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	6.0e-42
WP_011302026.1|1591576_1593409_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	32.2	5.6e-31
WP_011302027.1|1593398_1594739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011302028.1|1594739_1595522_+	two-component system regulatory protein YycI	NA	NA	NA	NA	NA
WP_103301463.1|1595945_1596746_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.0	2.9e-40
WP_011302030.1|1597345_1597825_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_011302031.1|1597960_1599682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011302032.1|1599704_1600484_+	site-specific DNA-methyltransferase	NA	A0A0N9PB81	Sulfolobus_monocaudavirus	33.3	3.7e-08
WP_011302033.1|1600476_1601520_+	modification methylase	NA	K9ME42	Sulfolobus_virus	22.9	2.6e-09
WP_011302034.1|1601605_1602118_-	replication initiation protein	NA	NA	NA	NA	NA
WP_041784733.1|1602056_1602320_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
WP_011302035.1|1602438_1602945_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_011302036.1|1602958_1603270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011302037.1|1603365_1603704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011302038.1|1604178_1605807_-	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	29.5	6.9e-41
WP_011302039.1|1605827_1607177_-	recombinase family protein	NA	A0A2H4J388	uncultured_Caudovirales_phage	23.3	1.4e-15
>prophage 127
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1619737	1626227	2516540		Staphylococcus_phage(66.67%)	7	NA	NA
WP_011302048.1|1619737_1621420_+	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	29.6	1.3e-45
WP_011302049.1|1621518_1621857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011302050.1|1621952_1622264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011302051.1|1622279_1622786_+	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_011302053.1|1623113_1623317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011302054.1|1623442_1624678_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	30.5	9.9e-32
WP_011302055.1|1624670_1626227_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	86.7	2.2e-246
>prophage 128
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1632543	1638528	2516540		Catovirus(50.0%)	6	NA	NA
WP_041784736.1|1632543_1633410_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	51.1	6.0e-76
WP_011302061.1|1633779_1634448_+	capsular polysaccharide biosynthesis protein CapA	NA	NA	NA	NA	NA
WP_011302062.1|1634463_1635156_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	34.0	4.1e-27
WP_011302063.1|1635155_1635920_+	capsular polysaccharide biosynthesis protein Cap8C	NA	NA	NA	NA	NA
WP_011302064.1|1635943_1637779_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	30.8	3.7e-27
WP_011302065.1|1637763_1638528_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.9	3.7e-13
>prophage 129
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1641975	1643139	2516540		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_077461012.1|1641975_1643139_+	nucleotide sugar dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	50.4	1.5e-98
>prophage 130
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1652620	1654027	2516540		Catovirus(100.0%)	1	NA	NA
WP_011302077.1|1652620_1654027_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	27.4	6.0e-09
>prophage 131
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1668934	1675970	2516540		Planktothrix_phage(33.33%)	6	NA	NA
WP_011302090.1|1668934_1669597_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	4.2e-29
WP_170178155.1|1669696_1670077_+	YbgA family protein	NA	NA	NA	NA	NA
WP_011302092.1|1670349_1671654_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011302093.1|1671819_1672548_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	32.2	6.0e-13
WP_011302094.1|1672754_1673621_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_103301649.1|1675367_1675970_+	CatB-related O-acetyltransferase	NA	M1HKK6	Paramecium_bursaria_Chlorella_virus	42.7	6.1e-19
>prophage 132
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1683264	1689335	2516540		Herpes_simplex_virus(50.0%)	3	NA	NA
WP_011302106.1|1683264_1686243_+	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	29.9	3.2e-129
WP_011302107.1|1686465_1688211_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_011302108.1|1688387_1689335_+	glycosyltransferase family 2 protein	NA	F1C5B0	Cronobacter_phage	42.0	2.9e-60
>prophage 133
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1694712	1696589	2516540		Clostridium_phage(50.0%)	3	NA	NA
WP_011302112.1|1694712_1695180_-	helix-turn-helix domain-containing protein	NA	A0A0A7S0F1	Clostridium_phage	42.0	1.1e-07
WP_011302113.1|1695383_1695611_+	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
WP_011302114.1|1695824_1696589_+	2,4-dienoyl-CoA reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.8	2.2e-13
>prophage 134
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1711821	1712550	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011302131.1|1711821_1712550_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.9	1.8e-28
>prophage 135
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1721775	1722657	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011302135.1|1721775_1722657_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	39.6	6.0e-31
>prophage 136
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1728153	1731614	2516540		Enterococcus_phage(33.33%)	3	NA	NA
WP_011302142.1|1728153_1730004_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	63.8	4.6e-235
WP_011302143.1|1730000_1730537_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	L7TIP4	Escherichia_phage	40.1	5.4e-27
WP_011302144.1|1730618_1731614_+	choloylglycine hydrolase family protein	NA	M1HS66	Paramecium_bursaria_Chlorella_virus	28.8	1.3e-26
>prophage 137
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1737808	1738621	2516540		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
WP_011302152.1|1737808_1738621_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	M4QNT1	Ostreococcus_lucimarinus_virus	36.2	6.5e-40
>prophage 138
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1753452	1753803	2516540		Brochothrix_phage(100.0%)	1	NA	NA
WP_011302165.1|1753452_1753803_+	DUF4064 domain-containing protein	NA	D7RWL4	Brochothrix_phage	56.2	2.3e-10
>prophage 139
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1759095	1768081	2516540		Enterococcus_phage(33.33%)	6	NA	NA
WP_011302171.1|1759095_1759854_-	nickel pincer cofactor biosynthesis protein LarB	NA	A0A288TYA6	Enterococcus_phage	44.2	2.2e-21
WP_011302172.1|1759875_1760700_-	ATP-dependent sacrificial sulfur transferase LarE	NA	NA	NA	NA	NA
WP_011302173.1|1760715_1761978_-	nickel-dependent lactate racemase	NA	NA	NA	NA	NA
WP_011302174.1|1762041_1763199_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	36.1	9.9e-42
WP_037537494.1|1763330_1764410_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011302176.1|1765447_1768081_+	pyruvate, phosphate dikinase	NA	A0A2I7RQW7	Vibrio_phage	40.9	3.9e-94
>prophage 140
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1775223	1776537	2516540		Klosneuvirus(100.0%)	1	NA	NA
WP_011302182.1|1775223_1776537_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.2	6.2e-32
>prophage 141
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1780850	1788861	2516540	holin	Prochlorococcus_phage(33.33%)	6	NA	NA
WP_011302185.1|1780850_1781741_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	26.8	1.0e-06
WP_011302186.1|1781866_1782589_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011302187.1|1783073_1784696_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	23.1	4.8e-18
WP_002482146.1|1784865_1785426_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011302188.1|1785628_1787122_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_002482148.1|1787178_1788861_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	33.4	2.5e-62
>prophage 142
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1792265	1793642	2516540		Mycobacterium_phage(100.0%)	1	NA	NA
WP_011302195.1|1792265_1793642_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	28.6	2.5e-28
>prophage 143
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1799281	1803162	2516540		Staphylococcus_phage(50.0%)	3	NA	NA
WP_046199705.1|1799281_1800394_+	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	49.6	1.4e-101
WP_011302202.1|1800489_1801431_-	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_011302203.1|1801764_1803162_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	29.9	1.8e-50
>prophage 144
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1807055	1807724	2516540		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_011302207.1|1807055_1807724_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	35.5	6.3e-25
>prophage 145
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1811858	1813043	2516540		Klosneuvirus(100.0%)	1	NA	NA
WP_011302212.1|1811858_1813043_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.2	1.5e-37
>prophage 146
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1835999	1836731	2516540		Bacillus_virus(100.0%)	1	NA	NA
WP_002482190.1|1835999_1836731_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.4	1.8e-25
>prophage 147
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1843348	1845761	2516540		Pandoravirus(50.0%)	2	NA	NA
WP_011302240.1|1843348_1844638_-	homocysteine synthase	NA	A0A0B5JD48	Pandoravirus	23.5	3.1e-12
WP_011302241.1|1844855_1845761_+	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	37.9	3.0e-46
>prophage 148
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1860359	1861049	2516540		Bacillus_virus(100.0%)	1	NA	NA
WP_011302257.1|1860359_1861049_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	27.4	2.0e-13
>prophage 149
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1870692	1871475	2516540	protease	Staphylococcus_phage(100.0%)	1	NA	NA
WP_011302266.1|1870692_1871475_+|protease	serine protease	protease	A0A2H4PQN3	Staphylococcus_phage	36.0	9.7e-17
>prophage 150
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1875994	1891807	2516540		Staphylococcus_phage(25.0%)	14	NA	NA
WP_011302272.1|1875994_1876579_+	M23 family metallopeptidase	NA	G4KNQ9	Staphylococcus_phage	43.1	7.2e-17
WP_011302273.1|1876754_1877420_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_011302274.1|1877430_1877784_-	DUF488 domain-containing protein	NA	NA	NA	NA	NA
WP_011302275.1|1877915_1878344_+	6-carboxytetrahydropterin synthase	NA	J9PV91	Bacillus_phage	32.4	4.6e-13
WP_011302276.1|1878858_1879902_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_011302277.1|1880427_1881159_+	transglycosylase SLT domain-containing protein	NA	A0A0D3MVN5	Staphylococcus_phage	30.7	7.9e-13
WP_011302278.1|1881426_1882584_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_011302279.1|1882609_1883608_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	31.2	1.5e-38
WP_011302280.1|1883658_1883865_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_011302281.1|1883910_1886295_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	41.7	1.5e-132
WP_011302282.1|1886469_1887921_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	49.2	6.2e-118
WP_011302283.1|1888120_1888882_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.9	6.1e-32
WP_011302284.1|1888871_1890767_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011302285.1|1890937_1891807_+	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	43.3	2.5e-53
>prophage 151
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1914587	1917237	2516540		uncultured_Caudovirales_phage(33.33%)	3	NA	NA
WP_002482277.1|1914587_1914860_-	YrhK family protein	NA	A0A2H4IYD3	uncultured_Caudovirales_phage	46.2	3.5e-06
WP_011302302.1|1914980_1915514_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	46.5	1.7e-36
WP_172606390.1|1915647_1917237_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	23.6	1.6e-21
>prophage 152
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1922597	1923029	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011302307.1|1922597_1923029_-	CHAP domain-containing protein	NA	A0A1X9I9L1	Staphylococcus_phage	39.1	6.1e-13
>prophage 153
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1927202	1934059	2516540	transposase	Yellowstone_lake_phycodnavirus(33.33%)	4	NA	NA
WP_011302312.1|1927202_1928945_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.0	3.9e-34
WP_011302313.1|1929278_1930673_+	YfcC family protein	NA	NA	NA	NA	NA
WP_011302314.1|1930922_1931921_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	39.6	2.5e-54
WP_011302315.1|1932070_1934059_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	43.1	1.2e-07
>prophage 154
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1948078	1949416	2516540		Klosneuvirus(100.0%)	1	NA	NA
WP_011302330.1|1948078_1949416_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	28.2	2.5e-20
>prophage 155
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1953577	1958256	2516540		Catovirus(50.0%)	4	NA	NA
WP_011302334.1|1953577_1955302_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.9	5.4e-12
WP_002482316.1|1955486_1956071_+	MptD family putative ECF transporter S component	NA	NA	NA	NA	NA
WP_011302335.1|1956072_1956792_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_011302336.1|1956801_1958256_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.1	7.8e-12
>prophage 156
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1964700	1965771	2516540		Moumouvirus(100.0%)	1	NA	NA
WP_011302342.1|1964700_1965771_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2P1ELD9	Moumouvirus	27.6	3.7e-19
>prophage 157
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	1981309	1984847	2516540		Bacillus_phage(100.0%)	2	NA	NA
WP_011302360.1|1981309_1983091_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	30.8	6.6e-45
WP_011302361.1|1983083_1984847_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.6	1.1e-49
>prophage 158
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2019352	2020057	2516540		Moumouvirus(100.0%)	1	NA	NA
WP_002482377.1|2019352_2020057_+	SDR family oxidoreductase	NA	M1NMS3	Moumouvirus	25.8	1.4e-06
>prophage 159
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2025641	2026646	2516540		Pacmanvirus(100.0%)	1	NA	NA
WP_011302396.1|2025641_2026646_-	histidinol-phosphate aminotransferase family protein	NA	A0A1X6WGT4	Pacmanvirus	21.9	1.5e-09
>prophage 160
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2036878	2037697	2516540		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_041784887.1|2036878_2037697_+	SDR family oxidoreductase	NA	A0A0G2Y8L6	Acanthamoeba_polyphaga_mimivirus	32.9	1.6e-06
>prophage 161
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2042399	2043050	2516540		Bacillus_virus(100.0%)	1	NA	NA
WP_002482400.1|2042399_2043050_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	36.7	3.1e-24
>prophage 162
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2051094	2052279	2516540	holin	Mycoplasma_phage(100.0%)	1	NA	NA
WP_002482409.1|2051094_2052279_+|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	37.0	8.3e-20
>prophage 163
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2058720	2059461	2516540		Bacillus_virus(100.0%)	1	NA	NA
WP_002482417.1|2058720_2059461_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	42.1	2.6e-40
>prophage 164
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2062636	2064412	2516540		Enterobacteria_phage(100.0%)	1	NA	NA
WP_011302423.1|2062636_2064412_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	30.3	5.9e-62
>prophage 165
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2080949	2081318	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011302440.1|2080949_2081318_-	hypothetical protein	NA	A0A2R3ZXP9	Staphylococcus_phage	55.7	5.7e-20
>prophage 166
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2105537	2106113	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011302467.1|2105537_2106113_+	peptidoglycan recognition protein	NA	A0A1S6KVC6	Staphylococcus_phage	47.5	2.1e-45
>prophage 167
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2113174	2113954	2516540		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_011302475.1|2113174_2113954_+	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.5	3.5e-19
>prophage 168
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2124241	2125273	2516540		Bacillus_virus(100.0%)	1	NA	NA
WP_002482481.1|2124241_2125273_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.3	2.6e-17
>prophage 169
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2138734	2141284	2516540		Bacillus_phage(50.0%)	3	NA	NA
WP_002482492.1|2138734_2139409_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	45.6	2.1e-52
WP_011302493.1|2139563_2140616_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011302494.1|2140615_2141284_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.2	2.7e-36
>prophage 170
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2145005	2146229	2516540		Salmonella_phage(100.0%)	1	NA	NA
WP_011302498.1|2145005_2146229_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.6	7.5e-32
>prophage 171
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2162850	2163750	2516540		Amsacta_moorei_entomopoxvirus(100.0%)	1	NA	NA
WP_011302512.1|2162850_2163750_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	26.7	1.8e-14
>prophage 172
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2175143	2178409	2516540		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
WP_011302522.1|2175143_2176322_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	35.0	1.4e-51
WP_011302523.1|2176321_2177446_+	amidohydrolase	NA	NA	NA	NA	NA
WP_002482530.1|2177527_2178409_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	45.9	7.7e-63
>prophage 173
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2182049	2182271	2516540	transposase	Macacine_betaherpesvirus(100.0%)	1	NA	NA
WP_077461005.1|2182049_2182271_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	52.2	4.1e-13
>prophage 174
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2187051	2187696	2516540		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_011302533.1|2187051_2187696_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	26.5	6.5e-11
>prophage 175
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2205237	2208233	2516540		Staphylococcus_phage(50.0%)	3	NA	NA
WP_011302548.1|2205237_2206014_+	glucosaminidase domain-containing protein	NA	H9A0W8	Staphylococcus_phage	42.9	9.9e-38
WP_011302549.1|2206091_2207216_+	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_002482556.1|2207276_2208233_-	2-hydroxyacid dehydrogenase family protein	NA	A0A1M7XU89	Cedratvirus	31.7	2.5e-30
>prophage 176
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2221700	2222447	2516540		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_011302561.1|2221700_2222447_-	amino acid ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	31.1	1.5e-19
>prophage 177
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2229949	2230951	2516540		Tupanvirus(100.0%)	1	NA	NA
WP_011302570.1|2229949_2230951_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	7.0e-52
>prophage 178
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2234110	2234716	2516540		Pithovirus(100.0%)	1	NA	NA
WP_011302574.1|2234110_2234716_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	31.7	2.9e-13
>prophage 179
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2248534	2254631	2516540		Leptospira_phage(50.0%)	5	NA	NA
WP_011302590.1|2248534_2251708_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.3	1.6e-62
WP_011302591.1|2252053_2252371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002482603.1|2252435_2252612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002482604.1|2252761_2253670_+	AEC family transporter	NA	NA	NA	NA	NA
WP_011302592.1|2253839_2254631_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.4	8.9e-18
>prophage 180
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2259067	2260402	2516540		Moraxella_phage(100.0%)	1	NA	NA
WP_011302596.1|2259067_2260402_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	31.9	3.3e-49
>prophage 181
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2276000	2277670	2516540		Planktothrix_phage(50.0%)	2	NA	NA
WP_011302607.1|2276000_2276810_+	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	31.3	2.0e-17
WP_011302608.1|2276806_2277670_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	24.8	1.8e-11
>prophage 182
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2284860	2286435	2516540		Vibrio_phage(100.0%)	1	NA	NA
WP_011302616.1|2284860_2286435_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	23.1	9.4e-11
>prophage 183
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2296301	2297264	2516540		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_011302626.1|2296301_2297264_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.4	2.2e-15
>prophage 184
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2312177	2313083	2516540		Klosneuvirus(100.0%)	1	NA	NA
WP_011302633.1|2312177_2313083_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	35.4	1.1e-27
>prophage 185
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2322491	2324297	2516540		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_011302639.1|2322491_2324297_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	39.0	1.5e-97
>prophage 186
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2338248	2341809	2516540		Clostridium_phage(50.0%)	4	NA	NA
WP_011302651.1|2338248_2338698_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	51.7	4.4e-38
WP_011302652.1|2338882_2339593_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_011302653.1|2339777_2340440_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_011302654.1|2340507_2341809_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	60.1	1.4e-137
>prophage 187
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2350943	2352554	2516540		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_011302663.1|2350943_2352554_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.4	2.2e-148
>prophage 188
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2359833	2367621	2516540		Bacillus_virus(25.0%)	9	NA	NA
WP_011302669.1|2359833_2360433_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	44.1	5.6e-33
WP_002482713.1|2360432_2361509_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_011302670.1|2361495_2362332_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_011302671.1|2362425_2363469_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	36.8	2.1e-43
WP_011302672.1|2363465_2363888_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_011302673.1|2364033_2364558_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_011302674.1|2364580_2365819_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	51.9	4.2e-99
WP_011302675.1|2365838_2366468_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_011302676.1|2366490_2367621_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	27.4	4.5e-23
>prophage 189
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2377632	2378052	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011302684.1|2377632_2378052_+	single-stranded DNA-binding protein	NA	A0A1J0MFD7	Staphylococcus_phage	41.1	2.5e-19
>prophage 190
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2383464	2384139	2516540		Tunisvirus(100.0%)	1	NA	NA
WP_170178158.1|2383464_2384139_-	HD domain-containing protein	NA	V9SGZ2	Tunisvirus	31.8	7.1e-08
>prophage 191
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2391512	2393033	2516540		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_011302697.1|2391512_2393033_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.4	3.1e-59
>prophage 192
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2397671	2398034	2516540		Clostridium_botulinum_C_phage(100.0%)	1	NA	NA
WP_011302703.1|2397671_2398034_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.5	8.4e-08
>prophage 193
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2414430	2419426	2516540		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_011302712.1|2414430_2415966_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	27.2	8.3e-12
WP_011302713.1|2416116_2417121_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_011302714.1|2417165_2417639_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_011302715.1|2417635_2419426_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	29.7	2.7e-54
>prophage 194
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2423293	2428938	2516540	tRNA	Moraxella_phage(33.33%)	4	NA	NA
WP_011302719.1|2423293_2424322_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	39.1	3.4e-62
WP_011302720.1|2424469_2424892_+	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
WP_041784785.1|2425043_2426645_-	AAA family ATPase	NA	F2QAF9	Pyramimonas_orientalis_virus	29.6	6.8e-17
WP_011302722.1|2427009_2428938_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1V0SGN0	Hokovirus	28.8	3.2e-53
>prophage 195
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2432459	2435702	2516540		Bacillus_phage(50.0%)	3	NA	NA
WP_011302726.1|2432459_2433944_+	sucrose-6-phosphate hydrolase	NA	F8WPR5	Bacillus_phage	25.9	2.8e-17
WP_011302727.1|2433940_2434909_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_002482781.1|2434985_2435702_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	33.9	3.6e-26
>prophage 196
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2443013	2444986	2516540		uncultured_virus(100.0%)	2	NA	NA
WP_002482789.1|2443013_2443301_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	48.4	1.8e-13
WP_011302732.1|2443363_2444986_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	53.5	2.4e-155
>prophage 197
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2451679	2452552	2516540		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011302742.1|2451679_2452552_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.3	1.1e-29
>prophage 198
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2458099	2458504	2516540		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_002482807.1|2458099_2458504_-	YolD-like family protein	NA	A0A2H4JEH6	uncultured_Caudovirales_phage	49.5	6.5e-25
>prophage 199
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2462710	2464482	2516540		Bacillus_virus(50.0%)	2	NA	NA
WP_011302752.1|2462710_2463262_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	40.7	3.2e-30
WP_011302753.1|2463399_2464482_+	pectate lyase	NA	U5PWM6	Bacillus_phage	33.7	4.9e-43
>prophage 200
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2468427	2479414	2516540		Bacillus_virus(40.0%)	10	NA	NA
WP_011302757.1|2468427_2469897_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.7	1.3e-102
WP_011302758.1|2469889_2470711_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	50.6	1.3e-64
WP_037538142.1|2470796_2471375_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_002482819.1|2471371_2471560_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_041079959.1|2471774_2473070_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.3	1.9e-17
WP_002482821.1|2473156_2473459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172606399.1|2473774_2474383_+	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA	NA
WP_011302762.1|2474501_2475191_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_011302763.1|2475190_2477407_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	40.3	1.2e-131
WP_011302764.1|2477410_2479414_+	NAD-dependent DNA ligase LigA	NA	A0A0A8J9A9	Ralstonia_phage	36.0	7.3e-109
>prophage 201
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2486028	2491061	2516540		Catovirus(33.33%)	5	NA	NA
WP_002482831.1|2486028_2486946_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	26.4	7.9e-18
WP_011302769.1|2487031_2488393_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.9	2.9e-109
WP_011302770.1|2488617_2489178_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_011302771.1|2489374_2490445_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_011302772.1|2490506_2491061_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	34.0	3.6e-26
>prophage 202
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2494488	2495436	2516540	transposase	Bacillus_phage(100.0%)	1	NA	NA
WP_106003905.1|2494488_2495436_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	45.6	4.7e-58
>prophage 203
NZ_CP022093	Staphylococcus saprophyticus strain FDAARGOS_355 chromosome, complete genome	2516540	2499664	2500294	2516540		Bacillus_phage(100.0%)	1	NA	NA
WP_002482846.1|2499664_2500294_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	25.9	2.3e-05
