The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022046	Staphylococcus sciuri strain FDAARGOS_285 chromosome, complete genome	2764040	816459	828130	2764040		Staphylococcus_phage(100.0%)	11	NA	NA
WP_088592271.1|816459_817869_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	51.9	1.5e-132
WP_088592272.1|817855_818854_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	38.2	3.0e-63
WP_025905546.1|818900_819125_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	67.1	1.8e-24
WP_058591984.1|819135_819921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048539511.1|819987_820452_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	54.5	8.2e-40
WP_088592733.1|820459_821212_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	57.1	3.6e-77
WP_048539512.1|821233_822835_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	68.8	1.8e-219
WP_048539513.1|823232_824426_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	79.6	5.0e-182
WP_048539514.1|824906_825818_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	55.0	3.9e-70
WP_088592273.1|825876_827259_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_088592274.1|827287_828130_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	64.3	7.0e-106
>prophage 2
NZ_CP022046	Staphylococcus sciuri strain FDAARGOS_285 chromosome, complete genome	2764040	843719	851563	2764040	holin	Staphylococcus_phage(85.71%)	7	NA	NA
WP_048539534.1|843719_844874_-|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	49.5	2.6e-18
WP_088592277.1|845126_846641_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	42.9	9.3e-08
WP_088592278.1|847159_848206_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	48.0	1.2e-91
WP_058592004.1|848210_848843_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	51.0	1.0e-53
WP_058592005.1|848854_850027_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	62.1	3.0e-139
WP_058592006.1|850047_850518_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	81.0	2.2e-56
WP_088592279.1|850558_851563_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	57.5	1.9e-105
>prophage 3
NZ_CP022046	Staphylococcus sciuri strain FDAARGOS_285 chromosome, complete genome	2764040	855336	862566	2764040	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_088592280.1|855336_855894_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	56.8	3.5e-53
WP_048539546.1|855890_856850_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	80.0	3.8e-63
WP_078355921.1|856969_858145_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	57.1	9.5e-125
WP_088592281.1|858436_860821_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	79.0	0.0e+00
WP_048539549.1|860842_861154_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	62.1	2.3e-30
WP_058592011.1|861306_862566_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	61.9	1.1e-30
>prophage 4
NZ_CP022046	Staphylococcus sciuri strain FDAARGOS_285 chromosome, complete genome	2764040	991172	1002483	2764040	tRNA	uncultured_Mediterranean_phage(42.86%)	8	NA	NA
WP_058592081.1|991172_992168_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	2.6e-06
WP_088592312.1|992184_993210_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_048539646.1|993225_994365_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.1	5.4e-85
WP_025904259.1|994377_994641_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.9	9.8e-06
WP_058592082.1|994810_997102_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	33.6	4.5e-30
WP_088592313.1|997361_999656_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.5	4.9e-69
WP_025904256.1|999655_1000174_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.9	3.3e-29
WP_025904255.1|1000293_1002483_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	1.3e-10
>prophage 5
NZ_CP022046	Staphylococcus sciuri strain FDAARGOS_285 chromosome, complete genome	2764040	1631418	1639889	2764040		Synechococcus_phage(33.33%)	9	NA	NA
WP_048542190.1|1631418_1631985_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	1.0e-28
WP_088592425.1|1631981_1633016_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.0	7.2e-68
WP_058591010.1|1632999_1634496_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	4.0e-43
WP_088592426.1|1634474_1636664_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.0	4.6e-141
WP_048542181.1|1636656_1637328_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_048542179.1|1637327_1637588_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_058591012.1|1637589_1638291_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	38.6	1.7e-41
WP_088592427.1|1638292_1639420_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_025905207.1|1639406_1639889_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.0	8.9e-21
>prophage 6
NZ_CP022046	Staphylococcus sciuri strain FDAARGOS_285 chromosome, complete genome	2764040	1831778	1839112	2764040	bacteriocin	Staphylococcus_phage(50.0%)	9	NA	NA
WP_088592467.1|1831778_1832411_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	37.3	2.1e-22
WP_058591498.1|1832407_1832770_-	YxeA family protein	NA	NA	NA	NA	NA
WP_088592468.1|1832769_1834773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058591500.1|1834798_1835092_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_058591501.1|1835346_1836600_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1X9I9G7	Staphylococcus_phage	74.1	9.6e-75
WP_078355576.1|1836620_1836941_-	PTS mannose transporter subunit IID	NA	Q4ZD59	Staphylococcus_phage	66.2	5.5e-27
WP_025904388.1|1837083_1837413_+	helix-turn-helix transcriptional regulator	NA	H9A0K4	Staphylococcus_phage	38.6	4.1e-09
WP_025904387.1|1837444_1837909_+	hypothetical protein	NA	A1BTY5	Staphylococcus_virus	51.6	9.1e-39
WP_058591502.1|1837963_1839112_-	galactonate dehydratase	NA	Q6A202	Oenococcus_phage	36.5	4.5e-63
>prophage 7
NZ_CP022046	Staphylococcus sciuri strain FDAARGOS_285 chromosome, complete genome	2764040	1898659	1905824	2764040		Staphylococcus_phage(83.33%)	7	NA	NA
WP_075577747.1|1898659_1898812_-	hypothetical protein	NA	A0A1Q1PVW7	Staphylococcus_phage	78.0	1.1e-12
WP_058591599.1|1899651_1899966_+	hypothetical protein	NA	A0A1Q1PW34	Staphylococcus_phage	80.2	2.3e-30
WP_153653758.1|1900328_1900505_-	hypothetical protein	NA	A0A1Q1PW37	Staphylococcus_phage	89.7	6.5e-22
WP_058591600.1|1900637_1900862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088592741.1|1901179_1901986_-	CHAP domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	33.2	2.4e-63
WP_037560253.1|1902997_1903465_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	77.2	3.3e-57
WP_058591601.1|1903475_1905824_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.1	1.0e-90
>prophage 8
NZ_CP022046	Staphylococcus sciuri strain FDAARGOS_285 chromosome, complete genome	2764040	1955612	1968155	2764040		uncultured_Caudovirales_phage(50.0%)	11	NA	NA
WP_162841905.1|1955612_1956569_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	67.6	1.0e-113
WP_048539936.1|1956709_1957126_-	FixH family protein	NA	NA	NA	NA	NA
WP_048539937.1|1957275_1958247_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	85.4	2.6e-160
WP_048539938.1|1958275_1960381_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	84.0	0.0e+00
WP_025905413.1|1960343_1960742_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	58.3	3.0e-38
WP_048539939.1|1961117_1962002_+	DMT family transporter	NA	NA	NA	NA	NA
WP_048539940.1|1962001_1962502_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	67.9	1.0e-48
WP_048539941.1|1962796_1964311_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.9	1.2e-66
WP_078355508.1|1964899_1966402_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.8	4.8e-65
WP_058591624.1|1966441_1967023_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_058591625.1|1967087_1968155_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	22.8	8.0e-14
>prophage 9
NZ_CP022046	Staphylococcus sciuri strain FDAARGOS_285 chromosome, complete genome	2764040	2465752	2476605	2764040	integrase	Staphylococcus_phage(45.45%)	16	2470472:2470487	2478691:2478706
WP_088592605.1|2465752_2466097_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	29.7	1.8e-07
WP_088592606.1|2467446_2467869_-	hypothetical protein	NA	A0A1C8E9D1	Bacillus_phage	31.8	1.3e-07
WP_088592607.1|2468066_2468273_-	hypothetical protein	NA	A0A2H4JAQ2	uncultured_Caudovirales_phage	42.9	9.0e-07
WP_088592608.1|2468477_2469353_-	ATP-binding protein	NA	A0A2I6PDV5	Staphylococcus_phage	38.9	8.8e-43
WP_088592609.1|2469367_2470252_-	DnaD domain protein	NA	A0A2H4J8S8	uncultured_Caudovirales_phage	48.2	1.1e-43
WP_088592610.1|2470311_2470686_-	hypothetical protein	NA	NA	NA	NA	NA
2470472:2470487	attL	TCTTCTTTAATAGATA	NA	NA	NA	NA
WP_088592611.1|2470686_2471070_-	pathogenicity island protein	NA	A0A2H4JBF1	uncultured_Caudovirales_phage	43.5	3.6e-17
WP_088592612.1|2471143_2471326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088592613.1|2471342_2471609_-	pathogenicity island protein	NA	Q4ZE77	Staphylococcus_phage	51.2	2.3e-18
WP_088592614.1|2471612_2472395_-	transcriptional regulator	NA	A1BTY9	Staphylococcus_virus	72.7	6.5e-106
WP_088592615.1|2472411_2472624_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_088592616.1|2472814_2473735_+	helix-turn-helix transcriptional regulator	NA	Q9AZH9	Lactococcus_phage	33.0	1.8e-09
WP_088592617.1|2473767_2474991_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	69.7	2.7e-154
WP_088592618.1|2474987_2475674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025906198.1|2475775_2476018_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_025906200.1|2476077_2476605_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	61.7	1.5e-50
2478691:2478706	attR	TCTTCTTTAATAGATA	NA	NA	NA	NA
