assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002209105.2_ASM220910v2	NZ_CP022086	Escherichia coli O104:H4 strain FDAARGOS_348 chromosome, complete genome	1	104868-104964	1	CRISPRCasFinder	no		DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA	NA|454aa|up_9|NZ_CP022086.2_92747_94109_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP022086.2_94165_95467_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP022086.2_95488_96634_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP022086.2_96762_97548_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP022086.2_97558_98794_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP022086.2_98815_99865_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP022086.2_100181_101849_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP022086.2_101858_103118_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP022086.2_103128_103944_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP022086.2_103940_104834_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP022086.2_105028_106096_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP022086.2_106092_106602_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP022086.2_106719_107442_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP022086.2_107444_107939_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP022086.2_108112_109498_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP022086.2_109533_110055_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP022086.2_110162_110375_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP022086.2_110376_111243_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP022086.2_111723_112266_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP022086.2_112485_113178_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_002209105.2_ASM220910v2	NZ_CP022086	Escherichia coli O104:H4 strain FDAARGOS_348 chromosome, complete genome	2	1435672-1435802	2	CRISPRCasFinder	no		DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	CCGGGTTAACCCAATCGGCTTCAGGCTGCTGCGGTTGGTGT	41	0	0	NA	NA	NA	1	1	Orphan	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA|60aa|up_7|NZ_CP022086.2_1430931_1431111_-,NA|35aa|up_5|NZ_CP022086.2_1431721_1431826_-,NA|361aa|up_0|NZ_CP022086.2_1434536_1435619_-,NA|181aa|down_3|NZ_CP022086.2_1437368_1437911_+,NA|128aa|down_5|NZ_CP022086.2_1439169_1439553_+,NA|238aa|down_6|NZ_CP022086.2_1439556_1440270_+,NA|120aa|down_7|NZ_CP022086.2_1440301_1440661_+,NA|70aa|down_8|NZ_CP022086.2_1440629_1440839_-	NA|106aa|up_9|NZ_CP022086.2_1430059_1430377_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|162aa|up_8|NZ_CP022086.2_1430427_1430913_-	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|60aa|up_7|NZ_CP022086.2_1430931_1431111_-	NA	NA|71aa|up_6|NZ_CP022086.2_1431320_1431533_-	pfam01848, HOK_GEF, Hok/gef family	NA|35aa|up_5|NZ_CP022086.2_1431721_1431826_-	NA	NA|195aa|up_4|NZ_CP022086.2_1431941_1432526_-	pfam04448, DUF551, Protein of unknown function (DUF551)	NA|132aa|up_3|NZ_CP022086.2_1432582_1432978_-	pfam06163, DUF977, Bacterial protein of unknown function (DUF977)	NA|257aa|up_2|NZ_CP022086.2_1432993_1433764_-	pfam07789, DUF1627, Protein of unknown function (DUF1627)	NA|247aa|up_1|NZ_CP022086.2_1433789_1434530_-	PRK12377, PRK12377, putative replication protein; Provisional	NA|361aa|up_0|NZ_CP022086.2_1434536_1435619_-	NA	NA|99aa|down_0|NZ_CP022086.2_1435872_1436169_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|67aa|down_1|NZ_CP022086.2_1436307_1436508_-	pfam09048, Cro, Cro	NA|238aa|down_2|NZ_CP022086.2_1436608_1437322_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|181aa|down_3|NZ_CP022086.2_1437368_1437911_+	NA	NA|259aa|down_4|NZ_CP022086.2_1437898_1438675_+	pfam08861, DUF1828, Domain of unknown function DUF1828	NA|128aa|down_5|NZ_CP022086.2_1439169_1439553_+	NA	NA|238aa|down_6|NZ_CP022086.2_1439556_1440270_+	NA	NA|120aa|down_7|NZ_CP022086.2_1440301_1440661_+	NA	NA|70aa|down_8|NZ_CP022086.2_1440629_1440839_-	NA	NA|74aa|down_9|NZ_CP022086.2_1441295_1441517_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed
GCF_002209105.2_ASM220910v2	NZ_CP022086	Escherichia coli O104:H4 strain FDAARGOS_348 chromosome, complete genome	3	2770542-2770631	3	CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC	29	0	0	NA	NA	I-E	1	1	TypeI-E	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA	NA|254aa|up_9|NZ_CP022086.2_2762354_2763116_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP022086.2_2763096_2764146_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP022086.2_2764142_2764622_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP022086.2_2764621_2765332_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP022086.2_2765350_2765662_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP022086.2_2765855_2766179_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP022086.2_2766228_2766834_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP022086.2_2766833_2768261_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP022086.2_2768262_2769171_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP022086.2_2769422_2770460_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP022086.2_2770727_2771021_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP022086.2_2771020_2771941_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP022086.2_2771937_2772588_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP022086.2_2772569_2773316_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP022086.2_2773326_2774382_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP022086.2_2774393_2774930_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP022086.2_2774926_2776489_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP022086.2_2776586_2779286_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP022086.2_2780827_2780980_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP022086.2_2781244_2781979_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_002209105.2_ASM220910v2	NZ_CP022086	Escherichia coli O104:H4 strain FDAARGOS_348 chromosome, complete genome	4	2797679-2798500	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,GGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Orphan	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA|47aa|down_1|NZ_CP022086.2_2799649_2799790_+	NA|424aa|up_9|NZ_CP022086.2_2786322_2787594_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP022086.2_2787584_2787845_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP022086.2_2787861_2788437_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP022086.2_2788584_2789445_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP022086.2_2789441_2790221_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP022086.2_2790198_2791608_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP022086.2_2791629_2793084_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP022086.2_2793153_2793939_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP022086.2_2794257_2795535_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP022086.2_2795561_2797040_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP022086.2_2798839_2799511_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP022086.2_2799649_2799790_+	NA	NA|433aa|down_2|NZ_CP022086.2_2800735_2802034_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP022086.2_2802121_2803759_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP022086.2_2803986_2804778_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP022086.2_2804848_2805184_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP022086.2_2805183_2805432_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP022086.2_2805509_2807744_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP022086.2_2807791_2809093_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP022086.2_2809149_2811906_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_002209105.2_ASM220910v2	NZ_CP022085	Escherichia coli O104:H4 strain FDAARGOS_348 plasmid unnamed1, complete sequence	1	96819-97073	1	PILER-CR	no	DEDDh	DEDDh	Unclear	GTATGCTGTCAGCGGT	16	0	0	NA	NA	NA	3	3	Orphan	DinG,PrimPol,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA|190aa|up_5|NZ_CP022085.2_89682_90252_-,NA|248aa|up_4|NZ_CP022085.2_90261_91005_-,NA|215aa|up_1|NZ_CP022085.2_94480_95125_-,NA|405aa|up_0|NZ_CP022085.2_95326_96541_+,NA|71aa|down_0|NZ_CP022085.2_97120_97333_-,NA|112aa|down_1|NZ_CP022085.2_97332_97668_-,NA|92aa|down_2|NZ_CP022085.2_97883_98159_-,NA|130aa|down_4|NZ_CP022085.2_98701_99091_-,NA|247aa|down_5|NZ_CP022085.2_99111_99852_-,NA|67aa|down_8|NZ_CP022085.2_101653_101854_-,NA|89aa|down_9|NZ_CP022085.2_103022_103289_-	NA|368aa|up_9|NZ_CP022085.2_83824_84928_-	pfam00303, Thymidylat_synt, Thymidylate synthase	NA|290aa|up_8|NZ_CP022085.2_85095_85965_-	pfam01503, PRA-PH, Phosphoribosyl-ATP pyrophosphohydrolase	NA|381aa|up_7|NZ_CP022085.2_86042_87185_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|772aa|up_6|NZ_CP022085.2_87293_89609_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|190aa|up_5|NZ_CP022085.2_89682_90252_-	NA	NA|248aa|up_4|NZ_CP022085.2_90261_91005_-	NA	NA|639aa|up_3|NZ_CP022085.2_90994_92911_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|362aa|up_2|NZ_CP022085.2_93140_94226_-	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|215aa|up_1|NZ_CP022085.2_94480_95125_-	NA	NA|405aa|up_0|NZ_CP022085.2_95326_96541_+	NA	NA|71aa|down_0|NZ_CP022085.2_97120_97333_-	NA	NA|112aa|down_1|NZ_CP022085.2_97332_97668_-	NA	NA|92aa|down_2|NZ_CP022085.2_97883_98159_-	NA	NA|142aa|down_3|NZ_CP022085.2_98214_98640_-	PHA02053, PHA02053, hypothetical protein	NA|130aa|down_4|NZ_CP022085.2_98701_99091_-	NA	NA|247aa|down_5|NZ_CP022085.2_99111_99852_-	NA	NA|275aa|down_6|NZ_CP022085.2_99899_100724_-	pfam18406, DUF1281_C, Ferredoxin-like domain in Api92-like protein	NA|277aa|down_7|NZ_CP022085.2_100819_101650_-	pfam01145, Band_7, SPFH domain / Band 7 family	NA|67aa|down_8|NZ_CP022085.2_101653_101854_-	NA	NA|89aa|down_9|NZ_CP022085.2_103022_103289_-	NA
