assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002208965.1_ASM220896v2	NZ_CP022062	Salmonella enterica strain FDAARGOS_312 chromosome, complete genome	1	3264686-3264786	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j	NA,NA|177aa|down_1|NZ_CP022062.1_3266304_3266835_-	NA|448aa|up_9|NZ_CP022062.1_3250764_3252108_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP022062.1_3252735_3253188_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP022062.1_3253215_3254718_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP022062.1_3254742_3257421_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP022062.1_3257641_3258043_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP022062.1_3258042_3258987_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP022062.1_3259137_3259407_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP022062.1_3259648_3261784_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP022062.1_3261893_3262778_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP022062.1_3262883_3262964_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP022062.1_3264999_3266244_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP022062.1_3266304_3266835_-	NA	NA|240aa|down_2|NZ_CP022062.1_3266993_3267713_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP022062.1_3267690_3268698_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP022062.1_3268875_3269772_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP022062.1_3269762_3270758_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP022062.1_3270974_3271499_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP022062.1_3271492_3271996_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP022062.1_3271982_3272300_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP022062.1_3272337_3272781_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_002208965.1_ASM220896v2	NZ_CP022062	Salmonella enterica strain FDAARGOS_312 chromosome, complete genome	2	3618101-3619594	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	23,24,24	24	TypeI-E	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j	NA,NA	NA|381aa|up_9|NZ_CP022062.1_3603900_3605043_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP022062.1_3605086_3607843_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP022062.1_3607900_3609196_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP022062.1_3609247_3611482_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP022062.1_3611565_3611922_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP022062.1_3611887_3612184_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP022062.1_3612950_3613751_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP022062.1_3613978_3615616_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP022062.1_3615698_3616997_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP022062.1_3617132_3617804_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP022062.1_3619691_3620489_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP022062.1_3620576_3620939_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP022062.1_3621362_3623162_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP022062.1_3623161_3624874_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP022062.1_3624949_3625684_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP022062.1_3625771_3626725_-	PRK15379, PRK15379, type III secretion system effector SopD	cas8e|519aa|down_6|NZ_CP022062.1_3629844_3631401_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_7|NZ_CP022062.1_3631397_3631958_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_8|NZ_CP022062.1_3631971_3633030_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_9|NZ_CP022062.1_3633040_3633787_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_002208965.1_ASM220896v2	NZ_CP022062	Salmonella enterica strain FDAARGOS_312 chromosome, complete genome	3	3635726-3636916	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,19,19	19	TypeI-E	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j	NA,NA	NA|571aa|up_9|NZ_CP022062.1_3623161_3624874_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP022062.1_3624949_3625684_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_7|NZ_CP022062.1_3625771_3626725_-	PRK15379, PRK15379, type III secretion system effector SopD	cas8e|519aa|up_6|NZ_CP022062.1_3629844_3631401_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP022062.1_3631397_3631958_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP022062.1_3631971_3633030_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP022062.1_3633040_3633787_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP022062.1_3633768_3634419_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP022062.1_3634415_3635336_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP022062.1_3635335_3635629_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP022062.1_3637581_3638628_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP022062.1_3638878_3639787_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP022062.1_3639796_3641236_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP022062.1_3641222_3641828_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP022062.1_3641845_3642202_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP022062.1_3642392_3642704_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP022062.1_3642722_3643433_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP022062.1_3643432_3643912_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP022062.1_3643908_3644958_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP022062.1_3644938_3645700_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002208965.1_ASM220896v2	NZ_CP022062	Salmonella enterica strain FDAARGOS_312 chromosome, complete genome	4	3636990-3637567	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j	NA,NA	NA|571aa|up_9|NZ_CP022062.1_3623161_3624874_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP022062.1_3624949_3625684_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_7|NZ_CP022062.1_3625771_3626725_-	PRK15379, PRK15379, type III secretion system effector SopD	cas8e|519aa|up_6|NZ_CP022062.1_3629844_3631401_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP022062.1_3631397_3631958_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP022062.1_3631971_3633030_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP022062.1_3633040_3633787_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP022062.1_3633768_3634419_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP022062.1_3634415_3635336_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP022062.1_3635335_3635629_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP022062.1_3637581_3638628_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP022062.1_3638878_3639787_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP022062.1_3639796_3641236_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP022062.1_3641222_3641828_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP022062.1_3641845_3642202_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP022062.1_3642392_3642704_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP022062.1_3642722_3643433_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP022062.1_3643432_3643912_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP022062.1_3643908_3644958_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP022062.1_3644938_3645700_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002208965.1_ASM220896v2	NZ_CP022061	Salmonella enterica strain FDAARGOS_312 plasmid unnamed2, complete sequence	1	1668-1787	1	CRISPRCasFinder	no			Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,RT,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j	NA|77aa|up_0|NZ_CP022061.1_1353_1584_+,NA|108aa|down_2|NZ_CP022061.1_3317_3641_+,NA|82aa|down_3|NZ_CP022061.1_3685_3931_+,NA|110aa|down_5|NZ_CP022061.1_4228_4558_+,NA|60aa|down_6|NZ_CP022061.1_4600_4780_+,NA|91aa|down_7|NZ_CP022061.1_5010_5283_+,NA|182aa|down_8|NZ_CP022061.1_5608_6154_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|280aa|up_1|NZ_CP022061.1_575_1415_-	pfam01051, Rep_3, Initiator Replication protein	NA|77aa|up_0|NZ_CP022061.1_1353_1584_+	NA	NA|84aa|down_0|NZ_CP022061.1_2649_2901_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_CP022061.1_2890_3172_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|108aa|down_2|NZ_CP022061.1_3317_3641_+	NA	NA|82aa|down_3|NZ_CP022061.1_3685_3931_+	NA	NA|72aa|down_4|NZ_CP022061.1_3920_4136_+	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|110aa|down_5|NZ_CP022061.1_4228_4558_+	NA	NA|60aa|down_6|NZ_CP022061.1_4600_4780_+	NA	NA|91aa|down_7|NZ_CP022061.1_5010_5283_+	NA	NA|182aa|down_8|NZ_CP022061.1_5608_6154_+	NA	NA|389aa|down_9|NZ_CP022061.1_6156_7323_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain
