The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022058	Chryseobacterium indologenes strain FDAARGOS_337 chromosome, complete genome	5119391	1215719	1259734	5119391	integrase,holin,transposase	Staphylococcus_phage(33.33%)	45	1236857:1236872	1262116:1262131
WP_027375148.1|1215719_1216184_-|transposase	IS200/IS605 family transposase	transposase	NA	NA	NA	NA
WP_027375147.1|1216271_1218665_-	3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_027375146.1|1218720_1219173_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_034737806.1|1219342_1220263_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	28.3	1.9e-11
WP_185133764.1|1220611_1221583_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_027375143.1|1221607_1222168_-	redoxin family protein	NA	NA	NA	NA	NA
WP_027375142.1|1222201_1223326_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_027375141.1|1223322_1223940_+	YdcF family protein	NA	NA	NA	NA	NA
WP_034737800.1|1223936_1226537_-	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_027375139.1|1226522_1227248_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_088583637.1|1227353_1227854_-	phosphoribosyl-ATP pyrophosphatase	NA	NA	NA	NA	NA
WP_027375137.1|1227857_1228166_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_027375136.1|1228247_1228598_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_088583638.1|1228692_1229367_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_088583639.1|1229450_1230443_-	type IX secretion system protein PorQ	NA	NA	NA	NA	NA
WP_027375133.1|1230610_1231318_+	UMP kinase	NA	NA	NA	NA	NA
WP_027375132.1|1231579_1231834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_034737317.1|1232162_1235030_-	type I restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_034737319.1|1235120_1236047_-|integrase	site-specific integrase	integrase	A0A1X9I6A9	Streptococcus_phage	28.7	1.1e-22
WP_088585020.1|1236185_1237274_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	24.5	1.6e-09
1236857:1236872	attL	TTACCCAGTTTATGGA	NA	NA	NA	NA
WP_052003808.1|1237266_1237761_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_088583640.1|1237732_1238482_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_088583641.1|1238474_1239626_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_034737331.1|1239673_1241224_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	56.4	2.6e-162
WP_034737333.1|1241486_1242326_-	RteC domain-containing protein	NA	NA	NA	NA	NA
WP_052003810.1|1242541_1242802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139229435.1|1242785_1243109_-	DUF4298 domain-containing protein	NA	NA	NA	NA	NA
WP_052003811.1|1243745_1244351_+	serine acetyltransferase	NA	NA	NA	NA	NA
WP_073067027.1|1244391_1245618_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_034737341.1|1246607_1247405_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_034737343.1|1247414_1247810_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_034737345.1|1247857_1248643_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_167593867.1|1248883_1250404_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	34.0	1.2e-74
WP_034737329.1|1250427_1251165_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_088583642.1|1251177_1251903_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_139258875.1|1251915_1252983_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_034737349.1|1253085_1253403_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_034737351.1|1253432_1254698_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_034737353.1|1254702_1255137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052003813.1|1255682_1256183_+	DUF3408 domain-containing protein	NA	NA	NA	NA	NA
WP_052003814.1|1256695_1257076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034737355.1|1257176_1257473_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_034737357.1|1257469_1257751_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_034737427.1|1257828_1258398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_034737359.1|1258483_1259734_-|integrase	site-specific integrase	integrase	H7BUI8	unidentified_phage	29.8	3.7e-26
1262116:1262131	attR	TCCATAAACTGGGTAA	NA	NA	NA	NA
>prophage 2
NZ_CP022058	Chryseobacterium indologenes strain FDAARGOS_337 chromosome, complete genome	5119391	2846561	2854870	5119391		Pelagibacter_phage(16.67%)	9	NA	NA
WP_027374503.1|2846561_2847353_-	NAD(+) synthase	NA	M1IPF8	Pelagibacter_phage	52.2	2.5e-60
WP_088584260.1|2847364_2847895_-	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	49.7	3.2e-40
WP_088584261.1|2847898_2848423_-	GNAT family N-acetyltransferase	NA	G9BWD5	Planktothrix_phage	33.3	2.9e-17
WP_088584262.1|2848431_2849070_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA	NA
WP_027374507.1|2849122_2850106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027374508.1|2850182_2851085_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	46.4	1.9e-40
WP_088584263.1|2851091_2853293_+	redoxin domain-containing protein	NA	A0A1J0GW78	Streptomyces_phage	39.7	6.3e-05
WP_027374510.1|2853317_2853641_+	gliding motility protein GldC	NA	NA	NA	NA	NA
WP_027374511.1|2853730_2854870_+	cystathionine gamma-synthase	NA	A0A0B5JD48	Pandoravirus	33.8	9.8e-26
>prophage 3
NZ_CP022058	Chryseobacterium indologenes strain FDAARGOS_337 chromosome, complete genome	5119391	4004898	4010767	5119391		Cellulophaga_phage(14.29%)	9	NA	NA
WP_088584643.1|4004898_4005627_-	serine/threonine protein phosphatase	NA	S0A0Y6	Cellulophaga_phage	37.6	1.9e-43
WP_088584644.1|4005629_4006172_-	RNA 2'-phosphotransferase	NA	A0A2R2ZGT8	Clostridioides_phage	51.7	1.5e-45
WP_088584645.1|4006291_4007239_-	ADP-ribosylglycohydrolase family protein	NA	A0A1S6UB21	Serratia_phage	33.9	9.5e-43
WP_027372177.1|4007238_4007925_-	NAD-dependent deacylase	NA	R9TG77	Vibrio_phage	40.4	3.6e-31
WP_088584646.1|4007929_4008436_-	O-acetyl-ADP-ribose deacetylase	NA	A0A0K1L687	Scale_drop_disease_virus	52.8	9.0e-32
WP_088584647.1|4008432_4009248_-	TIGR02452 family protein	NA	G3MBH6	Bacillus_virus	40.1	1.1e-47
WP_088584648.1|4009250_4009664_-	ADP-ribosylation/crystallin J1	NA	NA	NA	NA	NA
WP_088584649.1|4009685_4010279_-	DUF4291 domain-containing protein	NA	NA	NA	NA	NA
WP_061085243.1|4010290_4010767_-	macro domain-containing protein	NA	A0A2L1IVW3	Streptomyces_phage	45.6	1.4e-29
>prophage 4
NZ_CP022058	Chryseobacterium indologenes strain FDAARGOS_337 chromosome, complete genome	5119391	4698401	4745427	5119391	tail,protease,tRNA,transposase	Tupanvirus(40.0%)	49	NA	NA
WP_088584365.1|4698401_4699742_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_088584844.1|4699843_4701181_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_027373970.1|4701314_4702313_-|protease	zinc metalloprotease	protease	A0A2K9L5D3	Tupanvirus	28.9	4.5e-19
WP_027373971.1|4702676_4703684_-|protease	zinc metalloprotease	protease	A0A2K9KZL9	Tupanvirus	30.1	2.9e-21
WP_027373972.1|4704135_4704777_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.1	2.4e-05
WP_027373973.1|4704773_4705559_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_088584845.1|4706211_4706742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155857895.1|4706941_4707091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_034737300.1|4707238_4709833_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.2	6.3e-121
WP_034737303.1|4710225_4710804_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_088584846.1|4710962_4712279_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_088584847.1|4712278_4713364_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_027373979.1|4713440_4714379_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_027373980.1|4714491_4714773_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_027373981.1|4714863_4715613_+	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_027373982.1|4715706_4716171_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_088584848.1|4716278_4718099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027373984.1|4718306_4719107_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_027373985.1|4719227_4720358_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_034737311.1|4720364_4720673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088584849.1|4720675_4721089_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_088584850.1|4721564_4722770_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_027373989.1|4722872_4723466_+	transferase hexapeptide repeat family protein	NA	NA	NA	NA	NA
WP_123840731.1|4723478_4723664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088584851.1|4723699_4724527_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_088584852.1|4724646_4727142_+	phenylacetic acid degradation bifunctional protein PaaZ	NA	NA	NA	NA	NA
WP_034737406.1|4727208_4727913_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_060868603.1|4728096_4728870_+	DUF4241 domain-containing protein	NA	NA	NA	NA	NA
WP_088584853.1|4728879_4729566_+	SMUG2 DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_088584854.1|4729645_4730467_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA	NA
WP_027373995.1|4730501_4731053_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_034737363.1|4731304_4732069_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_027373997.1|4732206_4732824_+	membrane protein	NA	NA	NA	NA	NA
WP_027373998.1|4732898_4733189_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_027373999.1|4733290_4733776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130867866.1|4733783_4734101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088584856.1|4734111_4735482_+	DUF4173 domain-containing protein	NA	NA	NA	NA	NA
WP_088584857.1|4735488_4736166_+	DUF1361 domain-containing protein	NA	NA	NA	NA	NA
WP_034737429.1|4736250_4736790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027374003.1|4736848_4737361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088584858.1|4737439_4739095_-	S8 family peptidase	NA	NA	NA	NA	NA
WP_088584859.1|4739290_4740424_-	serine hydrolase	NA	NA	NA	NA	NA
WP_060868565.1|4740452_4741052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027374006.1|4741065_4741515_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_060868564.1|4741822_4742656_+	GLPGLI family protein	NA	NA	NA	NA	NA
WP_088584860.1|4742700_4743159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027374009.1|4743269_4743740_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_088584861.1|4743782_4744172_+	HIT family protein	NA	NA	NA	NA	NA
WP_027374011.1|4744239_4745427_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	48.7	1.2e-103
