assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002208255.1_ASM220825v1	NZ_CP022034	Salmonella enterica subsp. enterica serovar Onderstepoort str. SA20060086 chromosome, complete genome	1	933351-933745	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,cas14j,c2c9_V-U4	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	5,6,6	6	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,cas14j,c2c9_V-U4	NA,NA|123aa|down_6|NZ_CP022034.1_941259_941628_-	NA|381aa|up_9|NZ_CP022034.1_919148_920291_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP022034.1_920334_923091_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP022034.1_923148_924444_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP022034.1_924495_926730_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP022034.1_926814_927171_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP022034.1_927136_927433_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP022034.1_928200_929001_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP022034.1_929228_930866_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP022034.1_930948_932247_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP022034.1_932382_933054_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP022034.1_933842_934640_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP022034.1_934727_935090_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP022034.1_935513_937313_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP022034.1_937312_939025_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP022034.1_939100_939835_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP022034.1_939922_940876_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|123aa|down_6|NZ_CP022034.1_941259_941628_-	NA	NA|349aa|down_7|NZ_CP022034.1_942510_943557_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_8|NZ_CP022034.1_943807_944716_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_9|NZ_CP022034.1_944725_946165_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional
GCF_002208255.1_ASM220825v1	NZ_CP022034	Salmonella enterica subsp. enterica serovar Onderstepoort str. SA20060086 chromosome, complete genome	2	941675-942496	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,cas14j,c2c9_V-U4	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	27,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,13	13	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,cas14j,c2c9_V-U4	NA|123aa|up_0|NZ_CP022034.1_941259_941628_-,NA	NA|546aa|up_9|NZ_CP022034.1_929228_930866_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_8|NZ_CP022034.1_930948_932247_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_7|NZ_CP022034.1_932382_933054_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|up_6|NZ_CP022034.1_933842_934640_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_5|NZ_CP022034.1_934727_935090_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP022034.1_935513_937313_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP022034.1_937312_939025_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP022034.1_939100_939835_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_1|NZ_CP022034.1_939922_940876_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|123aa|up_0|NZ_CP022034.1_941259_941628_-	NA	NA|349aa|down_0|NZ_CP022034.1_942510_943557_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP022034.1_943807_944716_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP022034.1_944725_946165_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP022034.1_946151_946757_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP022034.1_946774_947131_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP022034.1_947321_947633_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP022034.1_947651_948362_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP022034.1_948361_948841_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP022034.1_948837_949887_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP022034.1_949867_950629_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002208255.1_ASM220825v1	NZ_CP022034	Salmonella enterica subsp. enterica serovar Onderstepoort str. SA20060086 chromosome, complete genome	3	2449131-2449211	3	CRISPRCasFinder	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,cas14j,c2c9_V-U4	Orphan	AGTATCAAATAATTCGCCGCTGCT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,cas14j,c2c9_V-U4	NA|53aa|up_3|NZ_CP022034.1_2447218_2447377_-,NA|52aa|up_2|NZ_CP022034.1_2447590_2447746_-,NA	NA|146aa|up_9|NZ_CP022034.1_2439866_2440304_+	COG4381, COG4381, Mu-like prophage protein gp46 [Function unknown]	NA|361aa|up_8|NZ_CP022034.1_2440304_2441387_+	COG3299, XkdT, Uncharacterized homolog of phage Mu protein gp47 [Function unknown]	NA|189aa|up_7|NZ_CP022034.1_2441377_2441944_+	COG3778, COG3778, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_6|NZ_CP022034.1_2443260_2444079_+	COG2110, COG2110, Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]	NA|242aa|up_5|NZ_CP022034.1_2444075_2444801_+	pfam14301, DUF4376, Domain of unknown function (DUF4376)	NA|755aa|up_4|NZ_CP022034.1_2444919_2447184_+	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase	NA|53aa|up_3|NZ_CP022034.1_2447218_2447377_-	NA	NA|52aa|up_2|NZ_CP022034.1_2447590_2447746_-	NA	NA|62aa|up_1|NZ_CP022034.1_2447902_2448088_+	COG4416, Com, Mu-like prophage protein Com [General function prediction only]	NA|350aa|up_0|NZ_CP022034.1_2448056_2449106_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|237aa|down_0|NZ_CP022034.1_2449243_2449954_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|301aa|down_1|NZ_CP022034.1_2449982_2450885_+	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold	NA|216aa|down_2|NZ_CP022034.1_2450894_2451542_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|383aa|down_3|NZ_CP022034.1_2451541_2452690_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|430aa|down_4|NZ_CP022034.1_2452825_2454115_+	PRK01610, PRK01610, putative voltage-gated ClC-type chloride channel ClcB; Provisional	NA|232aa|down_5|NZ_CP022034.1_2454070_2454766_-	PRK12374, PRK12374, ATP-dependent dethiobiotin synthetase BioD	NA|407aa|down_6|NZ_CP022034.1_2454891_2456112_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|300aa|down_7|NZ_CP022034.1_2456239_2457139_-	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|418aa|down_8|NZ_CP022034.1_2457258_2458512_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|83aa|down_9|NZ_CP022034.1_2458906_2459155_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit
GCF_002208255.1_ASM220825v1	NZ_CP022034	Salmonella enterica subsp. enterica serovar Onderstepoort str. SA20060086 chromosome, complete genome	4	3173709-3173834	4	CRISPRCasFinder	no	cas14j,c2c9_V-U4	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,cas14j,c2c9_V-U4	Unclear	TGGTTTGGTCAGTATCCGCAGTACCTTCATTTTTAACTGTGGTTT	45	0	0	NA	NA	NA	1	1	TypeV	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,cas14j,c2c9_V-U4	NA|77aa|up_6|NZ_CP022034.1_3170879_3171110_-,NA|130aa|up_2|NZ_CP022034.1_3172466_3172856_-,NA|115aa|up_1|NZ_CP022034.1_3172836_3173181_-,NA|191aa|down_7|NZ_CP022034.1_3182055_3182628_-,NA|90aa|down_8|NZ_CP022034.1_3182920_3183190_-	NA|232aa|up_9|NZ_CP022034.1_3166540_3167236_-	COG4672, gp18, Phage-related protein [Function unknown]	NA|111aa|up_8|NZ_CP022034.1_3167244_3167577_-	COG4718, COG4718, Phage-related protein [Function unknown]	NA|1101aa|up_7|NZ_CP022034.1_3167577_3170880_-	COG5281, COG5281, Phage-related minor tail protein [Function unknown]	NA|77aa|up_6|NZ_CP022034.1_3170879_3171110_-	NA	NA|121aa|up_5|NZ_CP022034.1_3171130_3171493_-	pfam16462, Phage_TAC_14, Phage tail assembly chaperone protein, TAC	NA|158aa|up_4|NZ_CP022034.1_3171562_3172036_-	pfam16463, Phage_TTP_13, Phage tail tube protein family	NA|134aa|up_3|NZ_CP022034.1_3172068_3172470_-	TIGR01725, hypothetical_protein, phage protein, HK97 gp10 family	NA|130aa|up_2|NZ_CP022034.1_3172466_3172856_-	NA	NA|115aa|up_1|NZ_CP022034.1_3172836_3173181_-	NA	NA|108aa|up_0|NZ_CP022034.1_3173177_3173501_-	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins	NA|429aa|down_0|NZ_CP022034.1_3173908_3175195_-	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family	NA|307aa|down_1|NZ_CP022034.1_3175268_3176189_-	cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad	NA|418aa|down_2|NZ_CP022034.1_3176232_3177486_-	pfam04860, Phage_portal, Phage portal protein	NA|574aa|down_3|NZ_CP022034.1_3177658_3179380_-	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only]	NA|145aa|down_4|NZ_CP022034.1_3179379_3179814_-	pfam05119, Terminase_4, Phage terminase, small subunit	NA|121aa|down_5|NZ_CP022034.1_3180150_3180513_-	pfam01844, HNH, HNH endonuclease	NA|356aa|down_6|NZ_CP022034.1_3180998_3182066_+	pfam14350, Beta_protein, Beta protein	NA|191aa|down_7|NZ_CP022034.1_3182055_3182628_-	NA	NA|90aa|down_8|NZ_CP022034.1_3182920_3183190_-	NA	NA|209aa|down_9|NZ_CP022034.1_3183197_3183824_-	COG3179, COG3179, Predicted chitinase [General function prediction only]
