assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002204555.1_ASM220455v1	NZ_CP017090	Staphylococcus aureus strain ISU935, complete genome	1	426420-426521	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	NA|70aa|up_8|NZ_CP017090.1_417979_418189_-,NA|128aa|up_6|NZ_CP017090.1_419013_419397_-,NA|33aa|up_0|NZ_CP017090.1_425644_425743_+,NA|221aa|down_1|NZ_CP017090.1_427611_428274_-,NA|179aa|down_7|NZ_CP017090.1_434365_434902_-	NA|84aa|up_9|NZ_CP017090.1_417689_417941_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP017090.1_417979_418189_-	NA	NA|194aa|up_7|NZ_CP017090.1_418366_418948_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP017090.1_419013_419397_-	NA	NA|209aa|up_5|NZ_CP017090.1_419666_420293_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP017090.1_420736_422260_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP017090.1_422275_422845_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP017090.1_423336_424092_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP017090.1_424171_425560_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP017090.1_425644_425743_+	NA	NA|319aa|down_0|NZ_CP017090.1_426537_427494_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP017090.1_427611_428274_-	NA	NA|136aa|down_2|NZ_CP017090.1_428416_428824_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP017090.1_429336_429915_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP017090.1_429914_431183_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP017090.1_431220_432687_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP017090.1_432711_434253_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP017090.1_434365_434902_-	NA	NA|235aa|down_8|NZ_CP017090.1_435293_435998_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP017090.1_436396_436669_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002204555.1_ASM220455v1	NZ_CP017090	Staphylococcus aureus strain ISU935, complete genome	2	780611-780693	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	NA|69aa|up_9|NZ_CP017090.1_767224_767431_+,NA|34aa|down_1|NZ_CP017090.1_782348_782450_+,NA|52aa|down_8|NZ_CP017090.1_790296_790452_+	NA|69aa|up_9|NZ_CP017090.1_767224_767431_+	NA	NA|237aa|up_8|NZ_CP017090.1_767518_768229_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP017090.1_768212_769217_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP017090.1_769690_771631_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP017090.1_771900_773784_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP017090.1_773795_775577_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP017090.1_775798_776776_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP017090.1_776768_778283_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP017090.1_778522_779581_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP017090.1_779919_780462_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP017090.1_781340_782258_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP017090.1_782348_782450_+	NA	NA|502aa|down_2|NZ_CP017090.1_782527_784033_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP017090.1_784373_784874_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP017090.1_784893_785760_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP017090.1_786560_786959_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP017090.1_786921_789027_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP017090.1_789144_790116_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP017090.1_790296_790452_+	NA	NA|324aa|down_9|NZ_CP017090.1_790490_791462_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_002204555.1_ASM220455v1	NZ_CP017090	Staphylococcus aureus strain ISU935, complete genome	3	823078-823156	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	NA|35aa|up_7|NZ_CP017090.1_813954_814059_+,NA|36aa|up_5|NZ_CP017090.1_815491_815599_+,NA	NA|191aa|up_9|NZ_CP017090.1_810395_810968_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP017090.1_811381_813913_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP017090.1_813954_814059_+	NA	NA|370aa|up_6|NZ_CP017090.1_814227_815338_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP017090.1_815491_815599_+	NA	NA|280aa|up_4|NZ_CP017090.1_815746_816586_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP017090.1_816759_817410_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP017090.1_817406_817643_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP017090.1_817911_819897_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP017090.1_819904_822751_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP017090.1_823414_824347_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP017090.1_824352_825192_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP017090.1_825199_825685_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP017090.1_825692_827132_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP017090.1_827198_828134_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP017090.1_828902_829814_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP017090.1_829810_830806_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP017090.1_830916_831861_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP017090.1_832424_833012_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP017090.1_833254_834157_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_002204555.1_ASM220455v1	NZ_CP017090	Staphylococcus aureus strain ISU935, complete genome	4	835730-835809	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	Orphan	CAGCTTCTGTGTTGGGGCCCCGCC	24	1	6	835754-835785|835754-835785|835754-835785|835754-835785|835754-835785|835754-835785	NZ_CP017090.1_90071-90102|NZ_CP017090.1_872200-872231|NZ_CP017090.1_1717954-1717923|NZ_CP017090.1_2125409-2125378|NZ_CP017090.1_2545730-2545761|NZ_CP017090.1_1388067-1388036	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	NA,NA|153aa|down_6|NZ_CP017090.1_843826_844285_+	NA|280aa|up_9|NZ_CP017090.1_824352_825192_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_CP017090.1_825199_825685_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_CP017090.1_825692_827132_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_CP017090.1_827198_828134_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_CP017090.1_828902_829814_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_CP017090.1_829810_830806_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_CP017090.1_830916_831861_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_CP017090.1_832424_833012_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_CP017090.1_833254_834157_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_CP017090.1_834859_835489_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_CP017090.1_836245_837259_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_CP017090.1_837311_838322_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_CP017090.1_838460_839651_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_CP017090.1_839772_840534_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_CP017090.1_840536_842054_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_CP017090.1_842183_843488_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_CP017090.1_843826_844285_+	NA	NA|78aa|down_7|NZ_CP017090.1_844351_844585_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_CP017090.1_844700_845441_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_CP017090.1_845474_847847_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_002204555.1_ASM220455v1	NZ_CP017090	Staphylococcus aureus strain ISU935, complete genome	5	871870-871951	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	871894-871927	NZ_CP017090.1_1387991-1387958	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	NA|38aa|up_1|NZ_CP017090.1_870772_870886_+,NA	NA|206aa|up_9|NZ_CP017090.1_865626_866244_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP017090.1_866398_866893_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP017090.1_867291_867714_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP017090.1_867861_868578_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP017090.1_868660_869200_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP017090.1_869350_869671_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP017090.1_869814_870171_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP017090.1_870328_870709_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP017090.1_870772_870886_+	NA	NA|293aa|up_0|NZ_CP017090.1_870887_871766_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP017090.1_872562_872949_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP017090.1_872941_873238_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP017090.1_873487_874513_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP017090.1_874505_875201_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP017090.1_875218_876040_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP017090.1_876393_876588_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP017090.1_876821_877673_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP017090.1_878000_878762_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP017090.1_878859_880167_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP017090.1_880281_881523_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_002204555.1_ASM220455v1	NZ_CP017090	Staphylococcus aureus strain ISU935, complete genome	6	1703254-1703338	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	3	1703280-1703312|1703280-1703312|1703280-1703312	NZ_CP017090.1_188912-188880|NZ_CP017090.1_828519-828551|NZ_CP017090.1_1387991-1387959	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP017090.1_1692463_1693147_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP017090.1_1693390_1693567_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP017090.1_1693859_1695206_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP017090.1_1695212_1695965_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP017090.1_1695966_1696905_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP017090.1_1696908_1698048_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP017090.1_1698183_1700016_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP017090.1_1700084_1700711_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP017090.1_1700742_1701720_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP017090.1_1701820_1702945_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP017090.1_1703510_1705334_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP017090.1_1705679_1705931_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP017090.1_1705975_1706950_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP017090.1_1707006_1709154_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP017090.1_1709212_1709674_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP017090.1_1709765_1710452_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP017090.1_1710491_1711208_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP017090.1_1711210_1711564_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP017090.1_1711564_1712149_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP017090.1_1712138_1712708_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_002204555.1_ASM220455v1	NZ_CP017090	Staphylococcus aureus strain ISU935, complete genome	7	1737684-1737831	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	Orphan	CTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGT	37	1	2	1737791-1737812|1737791-1737812	NZ_CP017090.1_2101271-2101292|NZ_CP017090.1_2101388-2101409	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	NA,NA|49aa|down_3|NZ_CP017090.1_1741821_1741968_-,NA|43aa|down_8|NZ_CP017090.1_1745004_1745133_-	NA|208aa|up_9|NZ_CP017090.1_1726353_1726977_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP017090.1_1726976_1728245_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP017090.1_1728256_1729180_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP017090.1_1729182_1729821_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP017090.1_1730105_1730414_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP017090.1_1730428_1730857_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP017090.1_1730860_1731121_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP017090.1_1731183_1733814_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP017090.1_1734156_1736634_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP017090.1_1736635_1737304_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP017090.1_1737998_1739117_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP017090.1_1739117_1740260_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP017090.1_1740571_1741585_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP017090.1_1741821_1741968_-	NA	NA|61aa|down_4|NZ_CP017090.1_1742007_1742190_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP017090.1_1742289_1742712_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP017090.1_1742796_1744071_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP017090.1_1744231_1745005_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP017090.1_1745004_1745133_-	NA	NA|589aa|down_9|NZ_CP017090.1_1745465_1747232_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_002204555.1_ASM220455v1	NZ_CP017090	Staphylococcus aureus strain ISU935, complete genome	8	2101302-2101383	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2101326-2101359|2101326-2101359|2101326-2101359|2101326-2101359|2101326-2101359	NZ_CP017090.1_823077-823110|NZ_CP017090.1_1176366-1176333|NZ_CP017090.1_1836300-1836267|NZ_CP017090.1_1392332-1392365|NZ_CP017090.1_2820550-2820583	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	NA|59aa|up_8|NZ_CP017090.1_2091692_2091869_-,NA|33aa|up_7|NZ_CP017090.1_2092111_2092210_-,NA	NA|127aa|up_9|NZ_CP017090.1_2091054_2091435_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|59aa|up_8|NZ_CP017090.1_2091692_2091869_-	NA	NA|33aa|up_7|NZ_CP017090.1_2092111_2092210_-	NA	NA|429aa|up_6|NZ_CP017090.1_2092409_2093696_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|97aa|up_5|NZ_CP017090.1_2093974_2094265_-	pfam03642, MAP, MAP domain	NA|477aa|up_4|NZ_CP017090.1_2094279_2095710_-	pfam03642, MAP, MAP domain	NA|331aa|up_3|NZ_CP017090.1_2096098_2097091_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|NZ_CP017090.1_2097328_2098345_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP017090.1_2098366_2099422_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP017090.1_2099857_2101081_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP017090.1_2101524_2102832_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP017090.1_2103371_2104988_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP017090.1_2105063_2105348_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP017090.1_2105522_2106266_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NZ_CP017090.1_2106290_2107550_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP017090.1_2107746_2108373_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP017090.1_2108733_2109519_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP017090.1_2110118_2110253_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP017090.1_2110488_2111052_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP017090.1_2111054_2111198_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_002204555.1_ASM220455v1	NZ_CP017090	Staphylococcus aureus strain ISU935, complete genome	9	2245469-2245549	8	CRISPRCasFinder	no	csa3,TnsE_C	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	NA|77aa|up_5|NZ_CP017090.1_2240343_2240574_-,NA|364aa|up_0|NZ_CP017090.1_2244360_2245452_+,NA|35aa|down_0|NZ_CP017090.1_2245884_2245989_-,NA|53aa|down_1|NZ_CP017090.1_2246668_2246827_+	NA|148aa|up_9|NZ_CP017090.1_2235265_2235709_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_8|NZ_CP017090.1_2235908_2236322_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|440aa|up_7|NZ_CP017090.1_2236761_2238081_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|458aa|up_6|NZ_CP017090.1_2238298_2239672_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP017090.1_2240343_2240574_-	NA	NA|313aa|up_4|NZ_CP017090.1_2240604_2241543_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP017090.1_2241978_2242644_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP017090.1_2242795_2243116_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP017090.1_2243117_2244095_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP017090.1_2244360_2245452_+	NA	NA|35aa|down_0|NZ_CP017090.1_2245884_2245989_-	NA	NA|53aa|down_1|NZ_CP017090.1_2246668_2246827_+	NA	NA|286aa|down_2|NZ_CP017090.1_2247484_2248342_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|260aa|down_3|NZ_CP017090.1_2248409_2249189_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|271aa|down_4|NZ_CP017090.1_2249694_2250507_-	PRK12554, PRK12554, undecaprenyl pyrophosphate phosphatase; Reviewed	NA|240aa|down_5|NZ_CP017090.1_2251066_2251786_-	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|307aa|down_6|NZ_CP017090.1_2251778_2252699_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|342aa|down_7|NZ_CP017090.1_2252786_2253812_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|237aa|down_8|NZ_CP017090.1_2253804_2254515_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	TnsE_C|511aa|down_9|NZ_CP017090.1_2254852_2256385_-	pfam18623, TnsE_C, TnsE C-terminal domain
GCF_002204555.1_ASM220455v1	NZ_CP017090	Staphylococcus aureus strain ISU935, complete genome	10	2271422-2271507	9	CRISPRCasFinder	no	TnsE_C	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	Orphan	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	NA,NA	TnsE_C|511aa|up_9|NZ_CP017090.1_2254852_2256385_-	pfam18623, TnsE_C, TnsE C-terminal domain	NA|623aa|up_8|NZ_CP017090.1_2256365_2258234_-	pfam15978, TnsD, Tn7-like transposition protein D	NA|555aa|up_7|NZ_CP017090.1_2258245_2259910_-	pfam13401, AAA_22, AAA domain	NA|719aa|up_6|NZ_CP017090.1_2259911_2262068_-	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|280aa|up_5|NZ_CP017090.1_2262064_2262904_-	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal	NA|602aa|up_4|NZ_CP017090.1_2263055_2264861_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP017090.1_2265541_2267080_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP017090.1_2267114_2269247_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP017090.1_2269258_2269693_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP017090.1_2269692_2270799_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP017090.1_2278840_2280196_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP017090.1_2280222_2281155_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP017090.1_2281156_2281966_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP017090.1_2282154_2283063_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP017090.1_2289301_2290366_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP017090.1_2290513_2291956_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP017090.1_2292278_2292752_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP017090.1_2292850_2294194_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP017090.1_2294370_2295054_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP017090.1_2295072_2296260_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_002204555.1_ASM220455v1	NZ_CP017090	Staphylococcus aureus strain ISU935, complete genome	11	2379449-2379529	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	14	2379474-2379504|2379474-2379504|2379474-2379504|2379474-2379504|2379474-2379504|2379474-2379504|2379474-2379504|2379474-2379504|2379474-2379504|2379474-2379504|2379474-2379504|2379474-2379504|2379474-2379504|2379474-2379504	NZ_CP017090.1_835704-835734|NZ_CP017090.1_90077-90107|NZ_CP017090.1_387712-387682|NZ_CP017090.1_655365-655335|NZ_CP017090.1_872206-872236|NZ_CP017090.1_1079404-1079434|NZ_CP017090.1_1181851-1181821|NZ_CP017090.1_1387947-1387917|NZ_CP017090.1_1476350-1476380|NZ_CP017090.1_1476466-1476496|NZ_CP017090.1_1717948-1717918|NZ_CP017090.1_2040169-2040199|NZ_CP017090.1_2368673-2368703|NZ_CP017090.1_2545736-2545766	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,TnsE_C,RT,WYL	NA|55aa|up_9|NZ_CP017090.1_2369982_2370147_+,NA|106aa|up_8|NZ_CP017090.1_2370391_2370709_+,NA|84aa|up_5|NZ_CP017090.1_2375830_2376082_+,NA|62aa|up_0|NZ_CP017090.1_2379221_2379407_+,NA	NA|55aa|up_9|NZ_CP017090.1_2369982_2370147_+	NA	NA|106aa|up_8|NZ_CP017090.1_2370391_2370709_+	NA	NA|1056aa|up_7|NZ_CP017090.1_2370892_2374060_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP017090.1_2374176_2375442_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP017090.1_2375830_2376082_+	NA	NA|255aa|up_4|NZ_CP017090.1_2376073_2376838_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP017090.1_2376999_2377440_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP017090.1_2377432_2378644_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP017090.1_2378745_2379096_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP017090.1_2379221_2379407_+	NA	NA|341aa|down_0|NZ_CP017090.1_2379672_2380695_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP017090.1_2380714_2381314_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP017090.1_2381320_2381554_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP017090.1_2381559_2382006_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP017090.1_2382019_2382505_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP017090.1_2382501_2383761_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP017090.1_2383823_2384318_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP017090.1_2384319_2384826_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP017090.1_2384856_2385861_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP017090.1_2386030_2386636_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
