assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002201835.1_ASM220183v1	NZ_CP021879	Escherichia coli strain AR_0137 chromosome, complete genome	1	85189-85333	1	CRISPRCasFinder	no		DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	NA,NA|28aa|down_2|NZ_CP021879.1_87378_87462_-	NA|357aa|up_9|NZ_CP021879.1_70327_71398_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP021879.1_71490_72072_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP021879.1_72076_73894_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP021879.1_74049_75423_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP021879.1_75498_76818_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP021879.1_77224_78520_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP021879.1_78577_79267_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP021879.1_79456_80659_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP021879.1_80655_83802_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP021879.1_83927_85112_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP021879.1_85356_86265_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP021879.1_86389_87301_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP021879.1_87378_87462_-	NA	NA|95aa|down_3|NZ_CP021879.1_87947_88232_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP021879.1_88303_88981_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP021879.1_89238_89430_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP021879.1_89479_90004_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP021879.1_90186_90645_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP021879.1_90764_91574_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP021879.1_91590_92706_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_002201835.1_ASM220183v1	NZ_CP021879	Escherichia coli strain AR_0137 chromosome, complete genome	2	646152-646301	2	CRISPRCasFinder	no	RT	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	Unclear	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	NA|120aa|up_9|NZ_CP021879.1_635363_635723_-,NA|195aa|up_8|NZ_CP021879.1_635715_636300_-,NA|213aa|up_6|NZ_CP021879.1_636969_637608_-,NA	NA|120aa|up_9|NZ_CP021879.1_635363_635723_-	NA	NA|195aa|up_8|NZ_CP021879.1_635715_636300_-	NA	NA|77aa|up_7|NZ_CP021879.1_636361_636592_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|213aa|up_6|NZ_CP021879.1_636969_637608_-	NA	NA|421aa|up_5|NZ_CP021879.1_637637_638900_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP021879.1_639344_640364_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP021879.1_640491_641994_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP021879.1_642154_643237_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP021879.1_643236_644337_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP021879.1_644603_646115_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP021879.1_646468_646912_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP021879.1_646911_649767_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|405aa|down_2|NZ_CP021879.1_650266_651480_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|308aa|down_3|NZ_CP021879.1_651866_652790_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|168aa|down_4|NZ_CP021879.1_653577_654081_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_5|NZ_CP021879.1_654126_654543_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_6|NZ_CP021879.1_654704_655709_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_7|NZ_CP021879.1_657631_658084_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP021879.1_658228_658822_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP021879.1_658892_659606_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_002201835.1_ASM220183v1	NZ_CP021879	Escherichia coli strain AR_0137 chromosome, complete genome	3	2342231-2342808	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	Orphan	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	NA,NA	NA|919aa|up_9|NZ_CP021879.1_2328824_2331581_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP021879.1_2331637_2332939_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP021879.1_2332986_2335221_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP021879.1_2335298_2335547_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP021879.1_2335546_2335882_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP021879.1_2335953_2336745_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP021879.1_2336972_2338610_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP021879.1_2338696_2339995_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP021879.1_2340054_2340927_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP021879.1_2341220_2341892_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP021879.1_2343445_2344924_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP021879.1_2344950_2346228_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP021879.1_2346546_2347332_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP021879.1_2347401_2348856_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP021879.1_2348949_2350287_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP021879.1_2350264_2351044_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP021879.1_2351040_2351901_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|NZ_CP021879.1_2352000_2353349_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|NZ_CP021879.1_2353483_2354059_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP021879.1_2354075_2354336_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_002201835.1_ASM220183v1	NZ_CP021879	Escherichia coli strain AR_0137 chromosome, complete genome	4	2371295-2371930	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA	26,26,26	0	0	NA	NA	I-E:I-E:I-E	8,9,10	10	TypeI-E	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	NA,NA	NA|51aa|up_9|NZ_CP021879.1_2360940_2361093_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_8|NZ_CP021879.1_2361169_2362282_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_7|NZ_CP021879.1_2362636_2365336_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP021879.1_2365433_2366996_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP021879.1_2366992_2367529_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP021879.1_2367543_2368599_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP021879.1_2368609_2369356_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP021879.1_2369337_2369988_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP021879.1_2369984_2370908_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP021879.1_2370904_2371198_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP021879.1_2371953_2372991_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP021879.1_2373242_2374151_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP021879.1_2374152_2375580_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP021879.1_2375579_2376185_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP021879.1_2376234_2376558_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP021879.1_2376751_2377063_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP021879.1_2377081_2377792_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP021879.1_2377791_2378271_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP021879.1_2378267_2379317_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP021879.1_2379297_2380059_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002201835.1_ASM220183v1	NZ_CP021879	Escherichia coli strain AR_0137 chromosome, complete genome	5	3321750-3321883	5	CRISPRCasFinder	no	DEDDh	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	Unclear	CCGCATCCGACATTGGCAGTGTGCCTGATGCGACGCT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	NA|22aa|up_2|NZ_CP021879.1_3319118_3319184_+,NA	NA|273aa|up_9|NZ_CP021879.1_3313086_3313905_-	PRK10302, PRK10302, hypothetical protein; Provisional	NA|189aa|up_8|NZ_CP021879.1_3313901_3314468_-	PRK11440, PRK11440, putative hydrolase; Provisional	NA|591aa|up_7|NZ_CP021879.1_3314777_3316550_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|151aa|up_6|NZ_CP021879.1_3316667_3317120_+	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|247aa|up_5|NZ_CP021879.1_3317148_3317889_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|174aa|up_4|NZ_CP021879.1_3317923_3318445_+	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC	NA|201aa|up_3|NZ_CP021879.1_3318446_3319049_-	PRK11470, PRK11470, YebB family permuted papain-like enzyme	NA|22aa|up_2|NZ_CP021879.1_3319118_3319184_+	NA	NA|204aa|up_1|NZ_CP021879.1_3320099_3320711_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|337aa|up_0|NZ_CP021879.1_3320719_3321730_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|262aa|down_0|NZ_CP021879.1_3321973_3322759_-	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|252aa|down_1|NZ_CP021879.1_3322755_3323511_-	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|311aa|down_2|NZ_CP021879.1_3323589_3324522_+	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|441aa|down_3|NZ_CP021879.1_3324537_3325860_+	PRK11649, PRK11649, putative peptidase; Provisional	NA|324aa|down_4|NZ_CP021879.1_3325979_3326951_+	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|481aa|down_5|NZ_CP021879.1_3327082_3328525_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|290aa|down_6|NZ_CP021879.1_3328652_3329522_-	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|492aa|down_7|NZ_CP021879.1_3329859_3331335_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|604aa|down_8|NZ_CP021879.1_3331569_3333381_+	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|214aa|down_9|NZ_CP021879.1_3333417_3334059_+	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
GCF_002201835.1_ASM220183v1	NZ_CP021879	Escherichia coli strain AR_0137 chromosome, complete genome	6	3512158-3512281	6	CRISPRCasFinder	no	DEDDh	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	NA,NA|30aa|down_7|NZ_CP021879.1_3521177_3521267_+	NA|471aa|up_9|NZ_CP021879.1_3501612_3503025_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP021879.1_3503581_3503791_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP021879.1_3504245_3504872_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP021879.1_3504892_3506995_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP021879.1_3506998_3507646_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP021879.1_3507709_3508378_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP021879.1_3508374_3509160_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP021879.1_3509163_3509976_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP021879.1_3509987_3511592_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP021879.1_3511717_3512023_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP021879.1_3512595_3513852_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP021879.1_3513892_3515266_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP021879.1_3515480_3516122_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP021879.1_3516161_3517310_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP021879.1_3517600_3518812_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP021879.1_3518924_3519857_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP021879.1_3519853_3520879_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP021879.1_3521177_3521267_+	NA	NA|390aa|down_8|NZ_CP021879.1_3521432_3522602_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP021879.1_3522747_3523329_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002201835.1_ASM220183v1	NZ_CP021879	Escherichia coli strain AR_0137 chromosome, complete genome	7	4181436-4181527	7	CRISPRCasFinder	no		DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	NA|70aa|up_9|NZ_CP021879.1_4170512_4170722_-,NA	NA|70aa|up_9|NZ_CP021879.1_4170512_4170722_-	NA	NA|1321aa|up_8|NZ_CP021879.1_4170776_4174739_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP021879.1_4174778_4175417_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP021879.1_4175704_4176796_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP021879.1_4176795_4177488_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP021879.1_4177499_4177886_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP021879.1_4177893_4178694_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP021879.1_4178703_4179294_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP021879.1_4179304_4179799_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP021879.1_4179819_4181148_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP021879.1_4181950_4182547_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP021879.1_4182567_4182795_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP021879.1_4182832_4184074_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP021879.1_4184366_4185623_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP021879.1_4185883_4186804_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP021879.1_4186803_4187109_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP021879.1_4187260_4187860_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP021879.1_4187856_4190403_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP021879.1_4190402_4191575_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP021879.1_4191704_4192397_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002201835.1_ASM220183v1	NZ_CP021879	Escherichia coli strain AR_0137 chromosome, complete genome	8	4442951-4443095	8	CRISPRCasFinder	no		DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	NA,NA	NA|330aa|up_9|NZ_CP021879.1_4430849_4431839_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP021879.1_4432235_4433144_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP021879.1_4433335_4435357_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP021879.1_4435935_4436613_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP021879.1_4436605_4437361_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP021879.1_4437347_4438502_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP021879.1_4438498_4439539_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP021879.1_4439625_4440915_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP021879.1_4440973_4441450_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP021879.1_4441601_4442885_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP021879.1_4443118_4445380_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP021879.1_4445562_4446996_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP021879.1_4447071_4448124_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP021879.1_4448307_4449261_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP021879.1_4449301_4450297_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP021879.1_4450451_4451270_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP021879.1_4451270_4452329_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP021879.1_4452331_4453021_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP021879.1_4453020_4453794_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP021879.1_4453960_4454110_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002201835.1_ASM220183v1	NZ_CP021879	Escherichia coli strain AR_0137 chromosome, complete genome	9	4691626-4691722	9	CRISPRCasFinder	no		DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,WYL,DinG	NA,NA	NA|231aa|up_9|NZ_CP021879.1_4683421_4684114_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP021879.1_4684333_4684876_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP021879.1_4685346_4686213_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP021879.1_4686214_4686427_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP021879.1_4686534_4687056_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP021879.1_4687091_4688477_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP021879.1_4688650_4689145_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP021879.1_4689147_4689870_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP021879.1_4689987_4690497_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP021879.1_4690493_4691561_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP021879.1_4691755_4692649_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP021879.1_4692645_4693461_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP021879.1_4693471_4694731_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP021879.1_4694740_4696408_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP021879.1_4696724_4697774_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP021879.1_4697795_4699031_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP021879.1_4699041_4699827_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP021879.1_4700054_4701200_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP021879.1_4701221_4702523_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP021879.1_4702579_4703941_-	PRK08044, PRK08044, allantoinase AllB
