assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002201795.1_ASM220179v1	NZ_CP021904	Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome	1	1237816-1241271	1,1	CRISPRCasFinder,PILER-CR	no	cas9,cas1,cas2	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	Type II-B, Type II-B, or Type II-C?,Type II-A,Type II-C	GCTGTTACCAATATTTCAAAGATACAATTTGAAAGCAATTCACAAC,GCTGTTACCAATATTTCAAAGATACAATTTGAAAGCAATTCACAAC	46,46	0	0	NA	NA	NA:NA	45,21	45	TypeII-B,TypeII-B,orTypeII-C?,TypeII-A,TypeII-C	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	NA|172aa|up_5|NZ_CP021904.1_1229022_1229538_+,NA|317aa|down_0|NZ_CP021904.1_1241450_1242401_-	NA|290aa|up_9|NZ_CP021904.1_1220948_1221818_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|203aa|up_8|NZ_CP021904.1_1221835_1222444_+	PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|253aa|up_7|NZ_CP021904.1_1223206_1223965_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|323aa|up_6|NZ_CP021904.1_1227733_1228702_+	cd18619, GH43_CoXyl43_like, Glycosyl hydrolase family 43 protein such as metagenomic beta-xylosidase/alpha-L-arabinofuranosidase CoXyl43	NA|172aa|up_5|NZ_CP021904.1_1229022_1229538_+	NA	NA|130aa|up_4|NZ_CP021904.1_1229703_1230093_+	cd08892, SRPBCC_Aha1, Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins	cas9|1455aa|up_3|NZ_CP021904.1_1230549_1234914_+	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|215aa|up_2|NZ_CP021904.1_1235130_1235775_+	pfam01797, Y1_Tnp, Transposase IS200 like	cas1|307aa|up_1|NZ_CP021904.1_1236412_1237333_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|111aa|up_0|NZ_CP021904.1_1237329_1237662_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|317aa|down_0|NZ_CP021904.1_1241450_1242401_-	NA	NA|645aa|down_1|NZ_CP021904.1_1243133_1245068_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|648aa|down_2|NZ_CP021904.1_1245708_1247652_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|438aa|down_3|NZ_CP021904.1_1247664_1248978_+	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]	NA|281aa|down_4|NZ_CP021904.1_1248993_1249836_-	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	NA|135aa|down_5|NZ_CP021904.1_1249828_1250233_-	pfam16022, DUF4783, Domain of unknown function (DUF4783)	NA|158aa|down_6|NZ_CP021904.1_1250509_1250983_+	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	NA|1190aa|down_7|NZ_CP021904.1_1251216_1254786_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|138aa|down_8|NZ_CP021904.1_1254740_1255154_-	pfam06271, RDD, RDD family	NA|192aa|down_9|NZ_CP021904.1_1255202_1255778_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_002201795.1_ASM220179v1	NZ_CP021904	Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome	2	1242499-1242620	2	CRISPRCasFinder	no	cas9,cas1,cas2	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	Type II-B, Type II-B, or Type II-C?,Type II-A,Type II-C	GCTGTTACCAATATTTCAAAGATACAATTTGAAAGCAATTCACAAC	46	0	0	NA	NA	NA	1	1	TypeII-B,TypeII-B,orTypeII-C?,TypeII-A,TypeII-C	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	NA|172aa|up_6|NZ_CP021904.1_1229022_1229538_+,NA|317aa|up_0|NZ_CP021904.1_1241450_1242401_-,NA	NA|203aa|up_9|NZ_CP021904.1_1221835_1222444_+	PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|253aa|up_8|NZ_CP021904.1_1223206_1223965_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|323aa|up_7|NZ_CP021904.1_1227733_1228702_+	cd18619, GH43_CoXyl43_like, Glycosyl hydrolase family 43 protein such as metagenomic beta-xylosidase/alpha-L-arabinofuranosidase CoXyl43	NA|172aa|up_6|NZ_CP021904.1_1229022_1229538_+	NA	NA|130aa|up_5|NZ_CP021904.1_1229703_1230093_+	cd08892, SRPBCC_Aha1, Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins	cas9|1455aa|up_4|NZ_CP021904.1_1230549_1234914_+	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|215aa|up_3|NZ_CP021904.1_1235130_1235775_+	pfam01797, Y1_Tnp, Transposase IS200 like	cas1|307aa|up_2|NZ_CP021904.1_1236412_1237333_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|111aa|up_1|NZ_CP021904.1_1237329_1237662_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|317aa|up_0|NZ_CP021904.1_1241450_1242401_-	NA	NA|645aa|down_0|NZ_CP021904.1_1243133_1245068_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|648aa|down_1|NZ_CP021904.1_1245708_1247652_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|438aa|down_2|NZ_CP021904.1_1247664_1248978_+	COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]	NA|281aa|down_3|NZ_CP021904.1_1248993_1249836_-	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes	NA|135aa|down_4|NZ_CP021904.1_1249828_1250233_-	pfam16022, DUF4783, Domain of unknown function (DUF4783)	NA|158aa|down_5|NZ_CP021904.1_1250509_1250983_+	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	NA|1190aa|down_6|NZ_CP021904.1_1251216_1254786_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|138aa|down_7|NZ_CP021904.1_1254740_1255154_-	pfam06271, RDD, RDD family	NA|192aa|down_8|NZ_CP021904.1_1255202_1255778_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|240aa|down_9|NZ_CP021904.1_1255810_1256530_-	TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron protein
GCF_002201795.1_ASM220179v1	NZ_CP021904	Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome	3	1330920-1330992	3	CRISPRCasFinder	no		cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	Orphan	AAGATGTCAGGGCTACGCCCCTA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	NA|204aa|up_5|NZ_CP021904.1_1324731_1325343_+,NA|281aa|up_4|NZ_CP021904.1_1325354_1326197_+,NA|267aa|up_3|NZ_CP021904.1_1326298_1327099_+,NA|236aa|down_2|NZ_CP021904.1_1334085_1334793_-,NA|193aa|down_3|NZ_CP021904.1_1334957_1335536_-,NA|191aa|down_6|NZ_CP021904.1_1339901_1340474_-	NA|1045aa|up_9|NZ_CP021904.1_1316541_1319676_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|896aa|up_8|NZ_CP021904.1_1319859_1322547_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|69aa|up_7|NZ_CP021904.1_1322835_1323042_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|389aa|up_6|NZ_CP021904.1_1323382_1324549_+	NF033189, internalin_A, class 1 internalin InlA	NA|204aa|up_5|NZ_CP021904.1_1324731_1325343_+	NA	NA|281aa|up_4|NZ_CP021904.1_1325354_1326197_+	NA	NA|267aa|up_3|NZ_CP021904.1_1326298_1327099_+	NA	NA|338aa|up_2|NZ_CP021904.1_1327115_1328129_+	cd07563, Peptidase_S41_IRBP, Interphotoreceptor retinoid-binding protein; serine protease family S41	NA|484aa|up_1|NZ_CP021904.1_1328147_1329599_+	COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]	NA|332aa|up_0|NZ_CP021904.1_1329724_1330720_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|190aa|down_0|NZ_CP021904.1_1331193_1331763_-	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|472aa|down_1|NZ_CP021904.1_1331938_1333354_-	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|236aa|down_2|NZ_CP021904.1_1334085_1334793_-	NA	NA|193aa|down_3|NZ_CP021904.1_1334957_1335536_-	NA	NA|799aa|down_4|NZ_CP021904.1_1335590_1337987_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|299aa|down_5|NZ_CP021904.1_1337996_1338893_-	pfam14054, DUF4249, Domain of unknown function (DUF4249)	NA|191aa|down_6|NZ_CP021904.1_1339901_1340474_-	NA	NA|171aa|down_7|NZ_CP021904.1_1340860_1341373_-	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|808aa|down_8|NZ_CP021904.1_1341410_1343834_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|296aa|down_9|NZ_CP021904.1_1343811_1344699_-	pfam14054, DUF4249, Domain of unknown function (DUF4249)
GCF_002201795.1_ASM220179v1	NZ_CP021904	Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome	4	2092150-2092226	4	CRISPRCasFinder	no		cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	Orphan	AGGGGCGTAAGCCCTGATATCTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	NA,NA|308aa|down_6|NZ_CP021904.1_2103007_2103931_+,NA|228aa|down_8|NZ_CP021904.1_2106891_2107575_+,NA|190aa|down_9|NZ_CP021904.1_2107661_2108231_+	NA|345aa|up_9|NZ_CP021904.1_2080232_2081267_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|292aa|up_8|NZ_CP021904.1_2081379_2082255_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|350aa|up_7|NZ_CP021904.1_2082435_2083485_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|246aa|up_6|NZ_CP021904.1_2083661_2084399_-	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like	NA|271aa|up_5|NZ_CP021904.1_2084412_2085225_-	pfam02673, BacA, Bacitracin resistance protein BacA	NA|94aa|up_4|NZ_CP021904.1_2085303_2085585_-	pfam11297, DUF3098, Protein of unknown function (DUF3098)	NA|290aa|up_3|NZ_CP021904.1_2085600_2086470_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|965aa|up_2|NZ_CP021904.1_2086908_2089803_+	pfam15979, Glyco_hydro_115, Glycosyl hydrolase family 115	NA|286aa|up_1|NZ_CP021904.1_2089836_2090694_+	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase	NA|465aa|up_0|NZ_CP021904.1_2090699_2092094_+	cd10931, CE4_u7, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily	NA|409aa|down_0|NZ_CP021904.1_2093188_2094415_-	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1	NA|490aa|down_1|NZ_CP021904.1_2094545_2096015_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|1224aa|down_2|NZ_CP021904.1_2096260_2099932_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|175aa|down_3|NZ_CP021904.1_2099953_2100478_+	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|425aa|down_4|NZ_CP021904.1_2100570_2101845_-	cd03825, GT4_WcaC-like, putative colanic acid biosynthesis glycosyl transferase WcaC and similar proteins	NA|264aa|down_5|NZ_CP021904.1_2101888_2102680_+	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|308aa|down_6|NZ_CP021904.1_2103007_2103931_+	NA	NA|857aa|down_7|NZ_CP021904.1_2103987_2106558_-	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|228aa|down_8|NZ_CP021904.1_2106891_2107575_+	NA	NA|190aa|down_9|NZ_CP021904.1_2107661_2108231_+	NA
GCF_002201795.1_ASM220179v1	NZ_CP021904	Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome	5	2642777-2646220	5,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8b6,cas3,cas5,cas6,WYL	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	Unclear	ATTTCAATTCCAGTATGGTGCGATTGGGAG,ATTTCAATTCCAGTATGGTGCGATTGGGAG,ATTTCAATTCCAGTATGGTGCGATTGGGAG	30,30,30	0	0	NA	NA	I-A,II-B,III-A:I-A,II-B,III-A:I-A,II-B,III-A	52,52,51	52	Unclear	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	NA|127aa|up_7|NZ_CP021904.1_2634127_2634508_-,NA|168aa|down_3|NZ_CP021904.1_2648509_2649013_-,cas8b6|458aa|down_5|NZ_CP021904.1_2650351_2651725_-,cas5|199aa|down_8|NZ_CP021904.1_2654940_2655537_-,NA|143aa|down_9|NZ_CP021904.1_2655542_2655971_-	NA|354aa|up_9|NZ_CP021904.1_2631603_2632665_-	TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase	NA|453aa|up_8|NZ_CP021904.1_2632674_2634033_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|127aa|up_7|NZ_CP021904.1_2634127_2634508_-	NA	NA|340aa|up_6|NZ_CP021904.1_2634507_2635527_-	pfam16125, DUF4837, Domain of unknown function (DUF4837)	NA|386aa|up_5|NZ_CP021904.1_2635661_2636819_-	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins	NA|71aa|up_4|NZ_CP021904.1_2637062_2637275_-	pfam02416, MttA_Hcf106, mttA/Hcf106 family	NA|440aa|up_3|NZ_CP021904.1_2637315_2638635_-	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP	NA|384aa|up_2|NZ_CP021904.1_2638876_2640028_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|294aa|up_1|NZ_CP021904.1_2640070_2640952_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|270aa|up_0|NZ_CP021904.1_2641761_2642571_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	cas2|88aa|down_0|NZ_CP021904.1_2646444_2646708_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|335aa|down_1|NZ_CP021904.1_2646769_2647774_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|171aa|down_2|NZ_CP021904.1_2647865_2648378_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|168aa|down_3|NZ_CP021904.1_2648509_2649013_-	NA	cas7|354aa|down_4|NZ_CP021904.1_2649211_2650273_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b6|458aa|down_5|NZ_CP021904.1_2650351_2651725_-	NA	cas3|727aa|down_6|NZ_CP021904.1_2651721_2653902_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|152aa|down_7|NZ_CP021904.1_2654097_2654553_-	pfam01797, Y1_Tnp, Transposase IS200 like	cas5|199aa|down_8|NZ_CP021904.1_2654940_2655537_-	NA	NA|143aa|down_9|NZ_CP021904.1_2655542_2655971_-	NA
GCF_002201795.1_ASM220179v1	NZ_CP021904	Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome	6	2648458-2648552	6	CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8b6,cas3,cas5,cas6,WYL	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	Unclear	AAATCCGCCAAAGTATCATGAAATCCCCAC	30	0	0	NA	NA	NA	1	1	Unclear	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	NA,cas8b6|458aa|down_1|NZ_CP021904.1_2650351_2651725_-,cas5|199aa|down_4|NZ_CP021904.1_2654940_2655537_-,NA|143aa|down_5|NZ_CP021904.1_2655542_2655971_-	NA|340aa|up_9|NZ_CP021904.1_2634507_2635527_-	pfam16125, DUF4837, Domain of unknown function (DUF4837)	NA|386aa|up_8|NZ_CP021904.1_2635661_2636819_-	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins	NA|71aa|up_7|NZ_CP021904.1_2637062_2637275_-	pfam02416, MttA_Hcf106, mttA/Hcf106 family	NA|440aa|up_6|NZ_CP021904.1_2637315_2638635_-	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP	NA|384aa|up_5|NZ_CP021904.1_2638876_2640028_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|294aa|up_4|NZ_CP021904.1_2640070_2640952_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|270aa|up_3|NZ_CP021904.1_2641761_2642571_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	cas2|88aa|up_2|NZ_CP021904.1_2646444_2646708_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|335aa|up_1|NZ_CP021904.1_2646769_2647774_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|171aa|up_0|NZ_CP021904.1_2647865_2648378_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas7|354aa|down_0|NZ_CP021904.1_2649211_2650273_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b6|458aa|down_1|NZ_CP021904.1_2650351_2651725_-	NA	cas3|727aa|down_2|NZ_CP021904.1_2651721_2653902_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|152aa|down_3|NZ_CP021904.1_2654097_2654553_-	pfam01797, Y1_Tnp, Transposase IS200 like	cas5|199aa|down_4|NZ_CP021904.1_2654940_2655537_-	NA	NA|143aa|down_5|NZ_CP021904.1_2655542_2655971_-	NA	cas6|219aa|down_6|NZ_CP021904.1_2655993_2656650_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	WYL|303aa|down_7|NZ_CP021904.1_2656711_2657620_-	pfam13280, WYL, WYL domain	NA|502aa|down_8|NZ_CP021904.1_2657831_2659337_+	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|990aa|down_9|NZ_CP021904.1_2659503_2662473_-	PRK05306, infB, translation initiation factor IF-2; Validated
GCF_002201795.1_ASM220179v1	NZ_CP021904	Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome	7	2745508-2745636	7	CRISPRCasFinder	no		cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	Orphan	ACAAAAAAAACTCTGCGTTTTTGCGTCTCTGCGTTTA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	NA|71aa|up_5|NZ_CP021904.1_2736559_2736772_-,NA|368aa|up_2|NZ_CP021904.1_2742892_2743996_+,NA	NA|1597aa|up_9|NZ_CP021904.1_2729635_2734426_+	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|155aa|up_8|NZ_CP021904.1_2734443_2734908_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|43aa|up_7|NZ_CP021904.1_2735327_2735456_+	pfam08877, MepB, MepB protein	NA|265aa|up_6|NZ_CP021904.1_2735559_2736354_+	pfam13539, Peptidase_M15_4, D-alanyl-D-alanine carboxypeptidase	NA|71aa|up_5|NZ_CP021904.1_2736559_2736772_-	NA	NA|1070aa|up_4|NZ_CP021904.1_2736810_2740020_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|648aa|up_3|NZ_CP021904.1_2740937_2742881_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|368aa|up_2|NZ_CP021904.1_2742892_2743996_+	NA	NA|135aa|up_1|NZ_CP021904.1_2744214_2744619_+	pfam14478, DUF4430, Domain of unknown function (DUF4430)	NA|170aa|up_0|NZ_CP021904.1_2744624_2745134_+	pfam02283, CobU, Cobinamide kinase / cobinamide phosphate guanyltransferase	NA|332aa|down_0|NZ_CP021904.1_2745646_2746642_+	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed	NA|252aa|down_1|NZ_CP021904.1_2746798_2747554_+	PRK00235, cobS, cobalamin synthase; Reviewed	NA|184aa|down_2|NZ_CP021904.1_2747678_2748230_+	TIGR03162, Adenosylcobalamin/alpha-ribazole_phosphatase, alpha-ribazole phosphatase	NA|852aa|down_3|NZ_CP021904.1_2748201_2750757_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|1410aa|down_4|NZ_CP021904.1_2751025_2755255_-	COG3291, COG3291, FOG: PKD repeat [General function prediction only]	NA|429aa|down_5|NZ_CP021904.1_2755336_2756623_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|441aa|down_6|NZ_CP021904.1_2756780_2758103_-	COG1520, COG1520, FOG: WD40-like repeat [Function unknown]	NA|265aa|down_7|NZ_CP021904.1_2758395_2759190_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|1332aa|down_8|NZ_CP021904.1_2759575_2763571_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|490aa|down_9|NZ_CP021904.1_2763627_2765097_+	PRK00784, PRK00784, cobyric acid synthase
GCF_002201795.1_ASM220179v1	NZ_CP021904	Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome	8	4243510-4244609	2,3	CRT,PILER-CR	no		cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	Orphan	GTAACATTGCTNACATCCCA,GTAACATTGCTAACATCCCA	20,20	0	0	NA	NA	NA:NA	15,4	15	Orphan	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	NA|899aa|up_5|NZ_CP021904.1_4232052_4234749_-,NA|234aa|up_4|NZ_CP021904.1_4234838_4235540_-,NA|89aa|down_2|NZ_CP021904.1_4249333_4249600_-,NA|175aa|down_9|NZ_CP021904.1_4255967_4256492_+	NA|465aa|up_9|NZ_CP021904.1_4227721_4229116_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|266aa|up_8|NZ_CP021904.1_4229457_4230255_-	PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|161aa|up_7|NZ_CP021904.1_4230251_4230734_-	pfam14007, YtpI, YtpI-like protein	NA|308aa|up_6|NZ_CP021904.1_4230830_4231754_-	cd08419, PBP2_CbbR_RubisCO_like, The C-terminal substrate binding of LysR-type transcriptional regulator (CbbR) of RubisCO operon, which is involved in the carbon dioxide fixation, contains the type 2 periplasmic binding fold	NA|899aa|up_5|NZ_CP021904.1_4232052_4234749_-	NA	NA|234aa|up_4|NZ_CP021904.1_4234838_4235540_-	NA	NA|479aa|up_3|NZ_CP021904.1_4236317_4237754_+	PRK09222, PRK09222, NADP-dependent isocitrate dehydrogenase	NA|186aa|up_2|NZ_CP021904.1_4237804_4238362_-	pfam11066, DUF2867, Protein of unknown function (DUF2867)	NA|471aa|up_1|NZ_CP021904.1_4238687_4240100_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|560aa|up_0|NZ_CP021904.1_4240301_4241981_+	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional	NA|593aa|down_0|NZ_CP021904.1_4245142_4246921_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|722aa|down_1|NZ_CP021904.1_4246946_4249112_-	COG4447, COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]	NA|89aa|down_2|NZ_CP021904.1_4249333_4249600_-	NA	NA|219aa|down_3|NZ_CP021904.1_4250025_4250682_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|668aa|down_4|NZ_CP021904.1_4250688_4252692_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|316aa|down_5|NZ_CP021904.1_4253421_4254369_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|110aa|down_6|NZ_CP021904.1_4254365_4254695_-	TIGR03071, couple_hipA, HipA N-terminal domain	NA|71aa|down_7|NZ_CP021904.1_4254691_4254904_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|247aa|down_8|NZ_CP021904.1_4255227_4255968_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|175aa|down_9|NZ_CP021904.1_4255967_4256492_+	NA
GCF_002201795.1_ASM220179v1	NZ_CP021904	Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome	9	4480301-4480410	8	CRISPRCasFinder	no	cas3HD	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	Unclear	AATAGCATAGCATATATTGCGATGCATCACAAA	33	0	0	NA	NA	NA	1	1	Unclear	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	NA|134aa|up_9|NZ_CP021904.1_4469653_4470055_+,NA|102aa|up_7|NZ_CP021904.1_4470971_4471277_-,NA|149aa|up_3|NZ_CP021904.1_4477734_4478181_+,NA|182aa|up_1|NZ_CP021904.1_4478931_4479477_+,NA	NA|134aa|up_9|NZ_CP021904.1_4469653_4470055_+	NA	NA|255aa|up_8|NZ_CP021904.1_4470157_4470922_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|102aa|up_7|NZ_CP021904.1_4470971_4471277_-	NA	NA|1027aa|up_6|NZ_CP021904.1_4471743_4474824_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|359aa|up_5|NZ_CP021904.1_4474826_4475903_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|488aa|up_4|NZ_CP021904.1_4475915_4477379_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|149aa|up_3|NZ_CP021904.1_4477734_4478181_+	NA	NA|259aa|up_2|NZ_CP021904.1_4478152_4478929_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|182aa|up_1|NZ_CP021904.1_4478931_4479477_+	NA	NA|199aa|up_0|NZ_CP021904.1_4479445_4480042_-	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase	NA|149aa|down_0|NZ_CP021904.1_4480451_4480898_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|341aa|down_1|NZ_CP021904.1_4481134_4482157_-	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|426aa|down_2|NZ_CP021904.1_4482268_4483546_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|276aa|down_3|NZ_CP021904.1_4483555_4484383_+	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	NA|437aa|down_4|NZ_CP021904.1_4484715_4486026_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|273aa|down_5|NZ_CP021904.1_4486013_4486832_-	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase	NA|298aa|down_6|NZ_CP021904.1_4487027_4487921_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|395aa|down_7|NZ_CP021904.1_4487928_4489113_-	TIGR04350, aminotransferase_class_I_and_II, putative C-S lyase	NA|188aa|down_8|NZ_CP021904.1_4489296_4489860_-	pfam13470, PIN_3, PIN domain	NA|152aa|down_9|NZ_CP021904.1_4489849_4490305_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family
GCF_002201795.1_ASM220179v1	NZ_CP021904	Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome	10	4750876-4750968	9	CRISPRCasFinder	no		cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	Orphan	GATATCGCACCTACGGCGCTATGA	24	1	2	4750900-4750944|4750900-4750944	NZ_CP021904.1_4754561-4754605|NZ_CP021904.1_4760008-4760052	NA	1	1	Orphan	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	NA|123aa|up_7|NZ_CP021904.1_4741470_4741839_+,NA|472aa|up_1|NZ_CP021904.1_4747894_4749310_+,NA|81aa|down_1|NZ_CP021904.1_4753918_4754161_+,NA|47aa|down_6|NZ_CP021904.1_4761966_4762107_-	NA|128aa|up_9|NZ_CP021904.1_4737484_4737868_+	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination,    and repair]	NA|982aa|up_8|NZ_CP021904.1_4738538_4741484_+	pfam08757, CotH, CotH kinase protein	NA|123aa|up_7|NZ_CP021904.1_4741470_4741839_+	NA	NA|449aa|up_6|NZ_CP021904.1_4741995_4743342_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|212aa|up_5|NZ_CP021904.1_4743431_4744067_+	COG4627, COG4627, Uncharacterized protein conserved in bacteria [Function unknown]	NA|431aa|up_4|NZ_CP021904.1_4744168_4745461_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|390aa|up_3|NZ_CP021904.1_4745590_4746760_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|380aa|up_2|NZ_CP021904.1_4746752_4747892_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|472aa|up_1|NZ_CP021904.1_4747894_4749310_+	NA	NA|332aa|up_0|NZ_CP021904.1_4749325_4750321_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|399aa|down_0|NZ_CP021904.1_4751377_4752574_+	pfam13173, AAA_14, AAA domain	NA|81aa|down_1|NZ_CP021904.1_4753918_4754161_+	NA	NA|99aa|down_2|NZ_CP021904.1_4754151_4754448_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|425aa|down_3|NZ_CP021904.1_4755657_4756932_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|56aa|down_4|NZ_CP021904.1_4757615_4757783_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|385aa|down_5|NZ_CP021904.1_4760535_4761690_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|47aa|down_6|NZ_CP021904.1_4761966_4762107_-	NA	NA|83aa|down_7|NZ_CP021904.1_4762625_4762874_+	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain	NA|628aa|down_8|NZ_CP021904.1_4763051_4764935_+	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated	NA|404aa|down_9|NZ_CP021904.1_4765137_4766349_+	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit
GCF_002201795.1_ASM220179v1	NZ_CP021904	Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome	11	4753223-4753315	10	CRISPRCasFinder	no		cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	Orphan	GATATCGCACCTACGGCGCTATGA	24	1	2	4753247-4753291|4753247-4753291	NZ_CP021904.1_4754561-4754605|NZ_CP021904.1_4760008-4760052	NA	1	1	Orphan	cas3,cas9,cas1,cas2,csa3,DEDDh,cas4,cas7,cas8b6,cas5,cas6,WYL,RT,PrimPol,PD-DExK,cas3HD	NA|123aa|up_8|NZ_CP021904.1_4741470_4741839_+,NA|472aa|up_2|NZ_CP021904.1_4747894_4749310_+,NA|81aa|down_0|NZ_CP021904.1_4753918_4754161_+,NA|47aa|down_5|NZ_CP021904.1_4761966_4762107_-	NA|982aa|up_9|NZ_CP021904.1_4738538_4741484_+	pfam08757, CotH, CotH kinase protein	NA|123aa|up_8|NZ_CP021904.1_4741470_4741839_+	NA	NA|449aa|up_7|NZ_CP021904.1_4741995_4743342_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|212aa|up_6|NZ_CP021904.1_4743431_4744067_+	COG4627, COG4627, Uncharacterized protein conserved in bacteria [Function unknown]	NA|431aa|up_5|NZ_CP021904.1_4744168_4745461_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|390aa|up_4|NZ_CP021904.1_4745590_4746760_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|380aa|up_3|NZ_CP021904.1_4746752_4747892_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|472aa|up_2|NZ_CP021904.1_4747894_4749310_+	NA	NA|332aa|up_1|NZ_CP021904.1_4749325_4750321_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|399aa|up_0|NZ_CP021904.1_4751377_4752574_+	pfam13173, AAA_14, AAA domain	NA|81aa|down_0|NZ_CP021904.1_4753918_4754161_+	NA	NA|99aa|down_1|NZ_CP021904.1_4754151_4754448_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|425aa|down_2|NZ_CP021904.1_4755657_4756932_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|56aa|down_3|NZ_CP021904.1_4757615_4757783_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|385aa|down_4|NZ_CP021904.1_4760535_4761690_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|47aa|down_5|NZ_CP021904.1_4761966_4762107_-	NA	NA|83aa|down_6|NZ_CP021904.1_4762625_4762874_+	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain	NA|628aa|down_7|NZ_CP021904.1_4763051_4764935_+	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated	NA|404aa|down_8|NZ_CP021904.1_4765137_4766349_+	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit	NA|183aa|down_9|NZ_CP021904.1_4766665_4767214_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate
