assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002197445.1_ASM219744v1	NZ_CP021800	Sinorhizobium meliloti strain USDA1021 chromosome, complete genome	1	516514-516626	1	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	ATTCCTGTGACGAGCACAGGAATGAGGG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,RT	NA|301aa|up_2|NZ_CP021800.1_512923_513826_-,NA	NA|632aa|up_9|NZ_CP021800.1_504988_506884_+	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]	NA|228aa|up_8|NZ_CP021800.1_506916_507600_-	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|232aa|up_7|NZ_CP021800.1_507819_508515_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|181aa|up_6|NZ_CP021800.1_508626_509169_+	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|464aa|up_5|NZ_CP021800.1_509373_510765_+	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant	NA|458aa|up_4|NZ_CP021800.1_510997_512371_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|132aa|up_3|NZ_CP021800.1_512506_512902_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|301aa|up_2|NZ_CP021800.1_512923_513826_-	NA	NA|578aa|up_1|NZ_CP021800.1_513967_515701_-	COG4655, COG4655, Predicted membrane protein [Function unknown]	NA|141aa|up_0|NZ_CP021800.1_515702_516125_-	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|640aa|down_0|NZ_CP021800.1_516751_518671_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|561aa|down_1|NZ_CP021800.1_518939_520622_+	PRK13981, PRK13981, NAD synthetase; Provisional	NA|276aa|down_2|NZ_CP021800.1_520624_521452_+	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|341aa|down_3|NZ_CP021800.1_521462_522485_-	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems	NA|398aa|down_4|NZ_CP021800.1_522582_523776_+	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|274aa|down_5|NZ_CP021800.1_524147_524969_+	PRK06198, PRK06198, short chain dehydrogenase; Provisional	NA|228aa|down_6|NZ_CP021800.1_525266_525950_+	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|376aa|down_7|NZ_CP021800.1_525973_527101_-	pfam11064, DUF2865, Protein of unknown function (DUF2865)	NA|215aa|down_8|NZ_CP021800.1_527268_527913_-	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|246aa|down_9|NZ_CP021800.1_528069_528807_-	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins
GCF_002197445.1_ASM219744v1	NZ_CP021800	Sinorhizobium meliloti strain USDA1021 chromosome, complete genome	2	2102207-2102269	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh	Orphan	CCCTCTCCCCGCATGCGGGGAGA	23	1	1	2102230-2102246	NZ_CP021800.1_45436-45452	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,RT	NA,NA	NA|273aa|up_9|NZ_CP021800.1_2089621_2090440_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|602aa|up_8|NZ_CP021800.1_2090457_2092263_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|340aa|up_7|NZ_CP021800.1_2092371_2093391_-	PRK00292, glk, glucokinase; Provisional	NA|127aa|up_6|NZ_CP021800.1_2093452_2093833_-	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism]	NA|356aa|up_5|NZ_CP021800.1_2093953_2095021_-	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane]	NA|620aa|up_4|NZ_CP021800.1_2095312_2097172_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|361aa|up_3|NZ_CP021800.1_2097352_2098435_+	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|378aa|up_2|NZ_CP021800.1_2098434_2099568_+	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|543aa|up_1|NZ_CP021800.1_2099576_2101205_+	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	NA|320aa|up_0|NZ_CP021800.1_2101215_2102175_+	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family	NA|285aa|down_0|NZ_CP021800.1_2102411_2103266_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|115aa|down_1|NZ_CP021800.1_2103274_2103619_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|464aa|down_2|NZ_CP021800.1_2103706_2105098_-	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism]	NA|270aa|down_3|NZ_CP021800.1_2105228_2106038_+	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	NA|388aa|down_4|NZ_CP021800.1_2106294_2107458_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|328aa|down_5|NZ_CP021800.1_2107686_2108670_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|337aa|down_6|NZ_CP021800.1_2108677_2109688_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|467aa|down_7|NZ_CP021800.1_2109746_2111147_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|429aa|down_8|NZ_CP021800.1_2111277_2112564_-	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]	NA|243aa|down_9|NZ_CP021800.1_2112586_2113315_-	COG5461, COG5461, Type IV pili component [Cell motility and secretion]
GCF_002197445.1_ASM219744v1	NZ_CP021801	Sinorhizobium meliloti strain USDA1021 plasmid psymA, complete sequence	1	1086275-1086384	1	CRISPRCasFinder	no		DEDDh	Orphan	GCCGCGCGGCGGGACCGCCGCGATGA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,RT	NA|116aa|up_8|NZ_CP021801.1_1069073_1069421_+,NA|169aa|up_5|NZ_CP021801.1_1075014_1075521_+,NA|118aa|up_4|NZ_CP021801.1_1075842_1076196_+,NA|64aa|up_1|NZ_CP021801.1_1082247_1082439_+,NA|116aa|down_0|NZ_CP021801.1_1086766_1087114_+,NA|239aa|down_3|NZ_CP021801.1_1089020_1089737_+	NA|222aa|up_9|NZ_CP021801.1_1067314_1067980_-	TIGR02161, Cytochrome_c-type_protein_NapC, periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family	NA|116aa|up_8|NZ_CP021801.1_1069073_1069421_+	NA	NA|151aa|up_7|NZ_CP021801.1_1071235_1071688_-	pfam11026, DUF2721, Protein of unknown function (DUF2721)	NA|407aa|up_6|NZ_CP021801.1_1072339_1073559_-	PRK14702, PRK14702, insertion element IS2 transposase InsD; Provisional	NA|169aa|up_5|NZ_CP021801.1_1075014_1075521_+	NA	NA|118aa|up_4|NZ_CP021801.1_1075842_1076196_+	NA	NA|695aa|up_3|NZ_CP021801.1_1078523_1080608_+	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain	NA|135aa|up_2|NZ_CP021801.1_1080869_1081274_-	pfam07886, BA14K, BA14K-like protein	NA|64aa|up_1|NZ_CP021801.1_1082247_1082439_+	NA	NA|587aa|up_0|NZ_CP021801.1_1083637_1085398_+	COG5616, COG5616, Predicted integral membrane protein [Function unknown]	NA|116aa|down_0|NZ_CP021801.1_1086766_1087114_+	NA	NA|55aa|down_1|NZ_CP021801.1_1087154_1087319_-	pfam11972, HTH_13, HTH DNA binding domain	NA|330aa|down_2|NZ_CP021801.1_1087782_1088772_-	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|239aa|down_3|NZ_CP021801.1_1089020_1089737_+	NA	NA|397aa|down_4|NZ_CP021801.1_1089786_1090977_+	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]	NA|114aa|down_5|NZ_CP021801.1_1091254_1091596_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|306aa|down_6|NZ_CP021801.1_1091625_1092543_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|275aa|down_7|NZ_CP021801.1_1092663_1093488_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|212aa|down_8|NZ_CP021801.1_1096043_1096679_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|127aa|down_9|NZ_CP021801.1_1096682_1097063_+	cd17537, REC_FixJ, phosphoacceptor receiver (REC) domain of FixJ family response regulators
GCF_002197445.1_ASM219744v1	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1	1302031-1302148	1	CRISPRCasFinder	no		csa3,RT	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,RT	NA|181aa|up_4|NZ_CP021802.1_1294841_1295384_-,NA|309aa|up_2|NZ_CP021802.1_1296258_1297185_-,NA|131aa|down_0|NZ_CP021802.1_1306271_1306664_-,NA|133aa|down_3|NZ_CP021802.1_1308764_1309163_-	NA|297aa|up_9|NZ_CP021802.1_1287580_1288471_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|208aa|up_8|NZ_CP021802.1_1288670_1289294_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|326aa|up_7|NZ_CP021802.1_1289290_1290268_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|742aa|up_6|NZ_CP021802.1_1290264_1292490_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|594aa|up_5|NZ_CP021802.1_1292560_1294342_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|181aa|up_4|NZ_CP021802.1_1294841_1295384_-	NA	NA|170aa|up_3|NZ_CP021802.1_1295586_1296096_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|309aa|up_2|NZ_CP021802.1_1296258_1297185_-	NA	NA|414aa|up_1|NZ_CP021802.1_1297209_1298451_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NZ_CP021802.1_1298531_1299449_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|131aa|down_0|NZ_CP021802.1_1306271_1306664_-	NA	NA|384aa|down_1|NZ_CP021802.1_1306754_1307906_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_2|NZ_CP021802.1_1307893_1308676_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_3|NZ_CP021802.1_1308764_1309163_-	NA	NA|1113aa|down_4|NZ_CP021802.1_1309288_1312627_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_5|NZ_CP021802.1_1312811_1314854_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_6|NZ_CP021802.1_1314859_1316023_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_7|NZ_CP021802.1_1316112_1317135_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|486aa|down_8|NZ_CP021802.1_1317840_1319298_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NZ_CP021802.1_1319294_1320569_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
GCF_002197445.1_ASM219744v1	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	2	1302238-1302337	2	CRISPRCasFinder	no		csa3,RT	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,RT	NA|181aa|up_4|NZ_CP021802.1_1294841_1295384_-,NA|309aa|up_2|NZ_CP021802.1_1296258_1297185_-,NA|131aa|down_0|NZ_CP021802.1_1306271_1306664_-,NA|133aa|down_3|NZ_CP021802.1_1308764_1309163_-	NA|297aa|up_9|NZ_CP021802.1_1287580_1288471_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|208aa|up_8|NZ_CP021802.1_1288670_1289294_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|326aa|up_7|NZ_CP021802.1_1289290_1290268_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|742aa|up_6|NZ_CP021802.1_1290264_1292490_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|594aa|up_5|NZ_CP021802.1_1292560_1294342_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|181aa|up_4|NZ_CP021802.1_1294841_1295384_-	NA	NA|170aa|up_3|NZ_CP021802.1_1295586_1296096_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|309aa|up_2|NZ_CP021802.1_1296258_1297185_-	NA	NA|414aa|up_1|NZ_CP021802.1_1297209_1298451_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NZ_CP021802.1_1298531_1299449_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|131aa|down_0|NZ_CP021802.1_1306271_1306664_-	NA	NA|384aa|down_1|NZ_CP021802.1_1306754_1307906_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_2|NZ_CP021802.1_1307893_1308676_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_3|NZ_CP021802.1_1308764_1309163_-	NA	NA|1113aa|down_4|NZ_CP021802.1_1309288_1312627_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_5|NZ_CP021802.1_1312811_1314854_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_6|NZ_CP021802.1_1314859_1316023_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_7|NZ_CP021802.1_1316112_1317135_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|486aa|down_8|NZ_CP021802.1_1317840_1319298_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NZ_CP021802.1_1319294_1320569_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
GCF_002197445.1_ASM219744v1	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	3	1302412-1302531	3	CRISPRCasFinder	no		csa3,RT	Orphan	TGCCGCCCGCACCGCCGCTGCCGCCGA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,RT	NA|181aa|up_4|NZ_CP021802.1_1294841_1295384_-,NA|309aa|up_2|NZ_CP021802.1_1296258_1297185_-,NA|131aa|down_0|NZ_CP021802.1_1306271_1306664_-,NA|133aa|down_3|NZ_CP021802.1_1308764_1309163_-	NA|297aa|up_9|NZ_CP021802.1_1287580_1288471_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|208aa|up_8|NZ_CP021802.1_1288670_1289294_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|326aa|up_7|NZ_CP021802.1_1289290_1290268_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|742aa|up_6|NZ_CP021802.1_1290264_1292490_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|594aa|up_5|NZ_CP021802.1_1292560_1294342_-	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|181aa|up_4|NZ_CP021802.1_1294841_1295384_-	NA	NA|170aa|up_3|NZ_CP021802.1_1295586_1296096_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|309aa|up_2|NZ_CP021802.1_1296258_1297185_-	NA	NA|414aa|up_1|NZ_CP021802.1_1297209_1298451_-	pfam04143, Sulf_transp, Sulphur transport	NA|306aa|up_0|NZ_CP021802.1_1298531_1299449_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|131aa|down_0|NZ_CP021802.1_1306271_1306664_-	NA	NA|384aa|down_1|NZ_CP021802.1_1306754_1307906_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|261aa|down_2|NZ_CP021802.1_1307893_1308676_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|133aa|down_3|NZ_CP021802.1_1308764_1309163_-	NA	NA|1113aa|down_4|NZ_CP021802.1_1309288_1312627_-	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|681aa|down_5|NZ_CP021802.1_1312811_1314854_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|388aa|down_6|NZ_CP021802.1_1314859_1316023_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|341aa|down_7|NZ_CP021802.1_1316112_1317135_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|486aa|down_8|NZ_CP021802.1_1317840_1319298_-	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|425aa|down_9|NZ_CP021802.1_1319294_1320569_-	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase
