The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021829	Sinorhizobium meliloti strain HM006 chromosome, complete genome	3664783	1765109	1770789	3664783		Rhizobium_phage(33.33%)	15	NA	NA
WP_088201970.1|1765109_1765469_-	hypothetical protein	NA	B4UTV3	Rhizobium_phage	37.2	6.6e-05
WP_088201971.1|1765461_1766046_-	hypothetical protein	NA	A0A0F6YP10	Sinorhizobium_phage	55.7	1.3e-13
WP_088201972.1|1766035_1766470_-	DUF968 domain-containing protein	NA	NA	NA	NA	NA
WP_088201973.1|1766470_1766650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088201974.1|1766646_1767075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088201975.1|1767074_1767554_-	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	50.9	4.2e-39
WP_088201976.1|1767553_1768066_-	DNA repair protein Rad52	NA	A0A1B1IQW3	uncultured_Mediterranean_phage	48.5	2.4e-24
WP_157718294.1|1768062_1768656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153514719.1|1768748_1768892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153514721.1|1769279_1769456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088201980.1|1769455_1769695_-	hypothetical protein	NA	A0A0U2BX35	Paracoccus_phage	40.4	3.1e-06
WP_088201981.1|1769691_1769949_-	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_088202203.1|1769948_1770149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088201982.1|1770283_1770625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153514723.1|1770636_1770789_-	hypothetical protein	NA	A0A0F6WCV9	Sinorhizobium_phage	82.8	1.3e-05
>prophage 2
NZ_CP021829	Sinorhizobium meliloti strain HM006 chromosome, complete genome	3664783	2118565	2129813	3664783	tRNA	uncultured_Mediterranean_phage(80.0%)	12	NA	NA
WP_010969277.1|2118565_2119600_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.0e-22
WP_086017693.1|2119693_2120512_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.7	1.7e-32
WP_010969279.1|2120504_2121224_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	45.2	9.8e-40
WP_010969280.1|2121288_2122398_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.6	1.4e-29
WP_003534564.1|2122492_2122699_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	65.9	8.2e-08
WP_010969282.1|2122772_2123420_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003534569.1|2123416_2124259_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	41.2	1.7e-43
WP_017277617.1|2124395_2125679_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.0	8.0e-101
WP_088202034.1|2125706_2126477_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.9	1.2e-22
WP_014526709.1|2126473_2127127_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.6	2.6e-15
WP_010969285.1|2127297_2127951_+	biotin transport regulator	NA	NA	NA	NA	NA
WP_010969286.1|2128274_2129813_+	LysM peptidoglycan-binding domain-containing protein	NA	I3PV24	Clostridium_phage	32.8	1.0e-14
>prophage 3
NZ_CP021829	Sinorhizobium meliloti strain HM006 chromosome, complete genome	3664783	2207098	2270494	3664783	integrase,protease,head,transposase,tail,capsid,tRNA,portal,terminase	Sinorhizobium_phage(31.71%)	72	2205270:2205287	2246536:2246553
2205270:2205287	attL	GCAGGCACAGGACGATGT	NA	NA	NA	NA
WP_046067457.1|2207098_2208472_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_153318583.1|2208625_2208802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010969335.1|2208875_2209712_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003528321.1|2209713_2210493_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010969336.1|2210507_2212058_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	38.6	5.1e-102
WP_010969337.1|2212287_2212599_+	pyrophosphatase	NA	NA	NA	NA	NA
WP_010969338.1|2212689_2213721_-	DNA polymerase III subunit delta'	NA	S5WKH4	Pseudomonas_phage	29.2	7.3e-12
WP_003528315.1|2213717_2214422_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	40.3	3.2e-35
WP_010969340.1|2214479_2215634_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	32.5	1.1e-43
WP_003528312.1|2215690_2216731_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	51.1	2.6e-17
WP_003528311.1|2217180_2217396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003528309.1|2217456_2217717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010969343.1|2220093_2221632_+	DUF1254 domain-containing protein	NA	M1IA53	Paramecium_bursaria_Chlorella_virus	28.8	5.0e-33
WP_013844460.1|2221998_2222163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003528303.1|2222387_2223104_+	transcriptional repressor LexA	NA	A0A0N9RTK0	Paenibacillus_phage	34.4	1.2e-05
WP_014526762.1|2223442_2224522_-	calcium-binding protein	NA	NA	NA	NA	NA
WP_010969345.1|2224922_2225270_+	membrane protein	NA	NA	NA	NA	NA
WP_010969346.1|2225317_2225611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202036.1|2225996_2227331_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_088202037.1|2227422_2228457_-	ATP-dependent DNA ligase	NA	A0A076GD42	Sinorhizobium_phage	64.5	3.2e-124
WP_088202038.1|2228653_2229022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088202039.1|2229195_2229585_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_153428668.1|2229728_2231369_+	calcium-binding protein	NA	NA	NA	NA	NA
WP_153428669.1|2231659_2232313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202042.1|2232442_2232775_-	DUF1515 domain-containing protein	NA	A0A291AUW4	Sinorhizobium_phage	81.5	1.1e-41
WP_153428670.1|2232774_2233014_-	hypothetical protein	NA	J7F8X5	Agrobacterium_phage	58.8	1.2e-15
WP_088202043.1|2232898_2233135_-	hypothetical protein	NA	A0A291AUV7	Sinorhizobium_phage	67.9	3.0e-22
WP_088202206.1|2233134_2233923_-	glycoside hydrolase family 108 protein	NA	A0A1V0DY74	Dinoroseobacter_phage	34.2	4.2e-28
WP_088202044.1|2234041_2234233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088202045.1|2234398_2235310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202046.1|2235508_2236279_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_088202047.1|2236252_2237128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202048.1|2237267_2238509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088202049.1|2238526_2238757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153428672.1|2241460_2243647_-	hypothetical protein	NA	A0A291AUU6	Sinorhizobium_phage	73.9	0.0e+00
WP_088202051.1|2243643_2244045_-	hypothetical protein	NA	A0A291AUV2	Sinorhizobium_phage	74.1	3.6e-52
WP_088202052.1|2244034_2244619_-	transcriptional regulator	NA	A0A291AUU9	Sinorhizobium_phage	92.8	2.2e-106
WP_088202053.1|2244621_2245344_-	hypothetical protein	NA	A0A291AUU7	Sinorhizobium_phage	56.7	5.9e-69
WP_088202054.1|2245343_2247569_-	tape measure protein	NA	A0A141GEX2	Brucella_phage	30.5	1.0e-39
2246536:2246553	attR	ACATCGTCCTGTGCCTGC	NA	NA	NA	NA
WP_088202055.1|2247681_2248110_-	gene transfer agent family protein	NA	A0A141GEX0	Brucella_phage	68.5	1.9e-43
WP_088202056.1|2248109_2248565_-	hypothetical protein	NA	A0A141GEW9	Brucella_phage	47.7	1.7e-34
WP_088202057.1|2248633_2248834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202058.1|2248833_2249244_-	DUF3168 domain-containing protein	NA	B4UTQ1	Rhizobium_phage	56.7	4.6e-34
WP_088202059.1|2249240_2249672_-	hypothetical protein	NA	A0A141GEW6	Brucella_phage	51.3	7.7e-32
WP_088202060.1|2249671_2250016_-|head,tail	head-tail adaptor protein	head,tail	B4UTP9	Rhizobium_phage	38.7	1.5e-14
WP_088202061.1|2250019_2250517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202062.1|2250541_2251129_-	hypothetical protein	NA	A0A141GEW4	Brucella_phage	46.9	1.5e-46
WP_088202063.1|2251589_2251979_-	hypothetical protein	NA	A0A0F7L2Y9	uncultured_marine_virus	42.0	1.3e-09
WP_088202064.1|2252052_2253456_-|capsid	phage major capsid protein	capsid	Q3HQT0	Burkholderia_phage	42.0	3.7e-83
WP_088202065.1|2253466_2254324_-|protease	Clp protease ClpP	protease	A0A0U4B0F3	Pseudomonas_phage	51.1	6.8e-64
WP_088202066.1|2254396_2255674_-|portal	phage portal protein	portal	A0A2D1GNU4	Pseudomonas_phage	37.2	5.6e-62
WP_088202067.1|2255687_2257394_-|terminase	terminase large subunit	terminase	I3ULZ6	Rhodobacter_phage	60.6	1.3e-191
WP_088202068.1|2257377_2257869_-	hypothetical protein	NA	I3ULZ5	Rhodobacter_phage	46.8	3.7e-30
WP_088202069.1|2257955_2258213_-	hypothetical protein	NA	A0A068C9A1	Rhizobium_phage	52.4	2.1e-13
WP_088202070.1|2258258_2258621_-	HNH endonuclease	NA	I3ULZ4	Rhodobacter_phage	58.0	2.0e-33
WP_088202071.1|2258826_2259486_-	antitermination protein NusG	NA	NA	NA	NA	NA
WP_088202072.1|2259469_2260699_-	helix-turn-helix domain-containing protein	NA	A0A291AUS5	Sinorhizobium_phage	70.1	7.6e-109
WP_088202073.1|2260863_2262168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088202074.1|2262176_2262482_-	hypothetical protein	NA	A0A291AUK8	Sinorhizobium_phage	53.1	4.0e-19
WP_088202075.1|2262482_2264000_-	S-adenosylmethionine-binding protein	NA	A0A2I7RQZ3	Vibrio_phage	28.9	5.3e-11
WP_088202076.1|2264145_2264394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024311587.1|2264393_2264615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202077.1|2264614_2265067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202078.1|2265286_2265538_-	hypothetical protein	NA	R9TNB3	Rhizobium_phage	52.0	5.1e-12
WP_088202207.1|2265626_2266328_+	LexA family transcriptional regulator	NA	R9TRS6	Rhizobium_phage	46.8	3.6e-55
WP_088202079.1|2266549_2266732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088202080.1|2266852_2267026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088202081.1|2267315_2267612_+	hypothetical protein	NA	A0A291AUJ5	Sinorhizobium_phage	61.2	1.5e-18
WP_088202082.1|2267767_2268889_+	phage Gp37/Gp68 family protein	NA	A0A291AUR0	Sinorhizobium_phage	62.0	1.3e-134
WP_088202083.1|2268885_2269587_+	hypothetical protein	NA	A0A219YFC7	Ochrobactrum_phage	45.0	1.1e-43
WP_088202084.1|2269583_2270120_+	hypothetical protein	NA	A0A291AUJ2	Sinorhizobium_phage	44.9	2.1e-26
WP_088202085.1|2270116_2270494_+	HNH endonuclease	NA	A0A291AUJ4	Sinorhizobium_phage	68.3	1.6e-46
>prophage 4
NZ_CP021829	Sinorhizobium meliloti strain HM006 chromosome, complete genome	3664783	2692914	2700148	3664783	transposase	Sinorhizobium_phage(50.0%)	11	NA	NA
WP_010969636.1|2692914_2693253_-	DUF1515 domain-containing protein	NA	A0A291AUW4	Sinorhizobium_phage	75.9	2.5e-38
WP_086017682.1|2693245_2693539_-	hypothetical protein	NA	A0A076G7I0	Sinorhizobium_phage	49.3	1.6e-09
WP_010969637.1|2693617_2694430_-	membrane protein	NA	L7TMU6	Rhizobium_phage	38.1	6.9e-26
WP_074934873.1|2694441_2694624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010969638.1|2694875_2695718_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010969640.1|2695807_2696272_-	hypothetical protein	NA	A0A0F6R5Y6	Sinorhizobium_phage	44.4	4.2e-28
WP_088202101.1|2696271_2697705_-	DNA packaging protein	NA	C8CLI4	Xylella_phage	65.1	4.8e-171
WP_003530046.1|2697844_2698186_+	GFA family protein	NA	NA	NA	NA	NA
WP_010969642.1|2698211_2698367_-	DUF3309 domain-containing protein	NA	NA	NA	NA	NA
WP_010969643.1|2698705_2699110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011970797.1|2699202_2700148_+|transposase	IS630-like element ISRm2011-2 family transposase	transposase	S5VXX4	Leptospira_phage	24.7	1.0e-12
>prophage 5
NZ_CP021829	Sinorhizobium meliloti strain HM006 chromosome, complete genome	3664783	3033469	3043104	3664783		Vibrio_phage(33.33%)	7	NA	NA
WP_003532953.1|3033469_3035524_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	1.1e-35
WP_107010522.1|3035612_3035738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013844736.1|3035956_3036991_-	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	68.6	4.1e-15
WP_010969853.1|3037014_3038202_-	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	27.8	9.2e-35
WP_010969854.1|3038461_3040372_-	DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	35.7	1.1e-74
WP_010969855.1|3040417_3042421_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.5	3.5e-87
WP_003532937.1|3042654_3043104_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.4	3.0e-15
>prophage 6
NZ_CP021829	Sinorhizobium meliloti strain HM006 chromosome, complete genome	3664783	3074870	3124431	3664783	tRNA,protease,transposase,holin	Klosneuvirus(14.29%)	45	NA	NA
WP_010969874.1|3074870_3075590_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_003534512.1|3075645_3075951_-|protease	ATP-dependent Clp protease adapter ClpS	protease	NA	NA	NA	NA
WP_010969876.1|3076181_3077285_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_003534506.1|3077757_3078213_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010969877.1|3078209_3078680_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_003534501.1|3078725_3079268_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.5	2.5e-35
WP_010969878.1|3079442_3079628_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_010969879.1|3079646_3080906_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A1B0V011	Roseobacter_phage	42.1	4.3e-51
WP_010969880.1|3080902_3081535_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003534495.1|3081531_3082155_-	DUF1285 domain-containing protein	NA	NA	NA	NA	NA
WP_010969882.1|3082513_3083527_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_010969883.1|3083530_3084451_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010969884.1|3084447_3087261_+	DUF4159 domain-containing protein	NA	NA	NA	NA	NA
WP_010969885.1|3087271_3089341_+	membrane protein	NA	NA	NA	NA	NA
WP_010969886.1|3089355_3089907_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010969887.1|3090164_3091157_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010969888.1|3091322_3091529_+	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_088202132.1|3091591_3092500_+	cell filamentation protein Fic	NA	NA	NA	NA	NA
WP_010969890.1|3092624_3093116_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_003534453.1|3093198_3094101_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_010969891.1|3094294_3094810_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003534449.1|3094813_3095641_+	anti-sigma factor	NA	NA	NA	NA	NA
WP_003534446.1|3095763_3096192_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_010969893.1|3096188_3096440_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA	NA
WP_010969894.1|3096577_3098287_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003534440.1|3098387_3098525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003534438.1|3098758_3099346_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	37.3	1.1e-28
WP_010969897.1|3101387_3102299_-	aminoglycoside phosphotransferase APH(3')	NA	Q75ZG1	Hepacivirus	30.2	8.6e-17
WP_010969898.1|3102330_3102795_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	47.1	1.1e-28
WP_010969899.1|3102791_3103712_-	cation transporter	NA	NA	NA	NA	NA
WP_010969900.1|3103880_3106070_-	anthranilate synthase	NA	NA	NA	NA	NA
WP_088202133.1|3106343_3108575_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_014529145.1|3108698_3109685_+	extensin family protein	NA	NA	NA	NA	NA
WP_010969903.1|3109845_3111525_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_010969904.1|3111615_3112839_-	DUF2333 family protein	NA	NA	NA	NA	NA
WP_088202134.1|3112842_3114132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003537933.1|3114315_3115479_+|transposase	IS4-like element ISRm16 family transposase	transposase	NA	NA	NA	NA
WP_010969906.1|3115656_3116061_-	DUF559 domain-containing protein	NA	NA	NA	NA	NA
WP_010969907.1|3116173_3118090_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_010969908.1|3118093_3119242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003535848.1|3119303_3120392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010969910.1|3120552_3121140_-	thymidine kinase	NA	A0A0K2FHC3	Enterobacter_phage	54.7	4.1e-52
WP_088202135.1|3121426_3122383_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_013844756.1|3122539_3123385_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_010969913.1|3123381_3124431_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	33.7	1.9e-20
>prophage 7
NZ_CP021829	Sinorhizobium meliloti strain HM006 chromosome, complete genome	3664783	3589013	3602737	3664783	terminase	Pelagibacter_phage(22.22%)	13	NA	NA
WP_088202164.1|3589013_3591596_-	hypothetical protein	NA	Q5GQD0	Synechococcus_phage	36.0	6.5e-09
WP_088202165.1|3591595_3592138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202166.1|3592137_3594591_-	hypothetical protein	NA	A0A0F7L7G6	uncultured_marine_virus	30.2	9.5e-111
WP_157718308.1|3594751_3595093_+	hypothetical protein	NA	W6PP19	Citrobacter_phage	36.4	6.7e-07
WP_088202168.1|3595089_3595878_-	hypothetical protein	NA	M1I7K5	Pelagibacter_phage	31.6	1.0e-10
WP_088202169.1|3595930_3596359_-	hypothetical protein	NA	A0A221SAL8	Ralstonia_phage	35.2	4.5e-08
WP_088202170.1|3596371_3597283_-	hypothetical protein	NA	A0A1B1IW42	uncultured_Mediterranean_phage	53.5	2.4e-75
WP_088202171.1|3597426_3598311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202172.1|3598307_3598574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202173.1|3598566_3600168_-	hypothetical protein	NA	M1INZ1	Pelagibacter_phage	44.4	4.6e-114
WP_088202174.1|3600316_3600838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202175.1|3600834_3602241_-	DNA-packaging protein	NA	A0A1V0DY66	Dinoroseobacter_phage	39.9	6.6e-32
WP_088202176.1|3602308_3602737_-|terminase	terminase small subunit protein	terminase	F8TUR4	EBPR_podovirus	58.4	2.3e-36
>prophage 8
NZ_CP021829	Sinorhizobium meliloti strain HM006 chromosome, complete genome	3664783	3610479	3618130	3664783	integrase	Sinorhizobium_phage(37.5%)	18	3610806:3610819	3624658:3624671
WP_153514723.1|3610479_3610632_+	hypothetical protein	NA	A0A0F6WCV9	Sinorhizobium_phage	82.8	1.3e-05
WP_088201982.1|3610643_3610985_+	hypothetical protein	NA	NA	NA	NA	NA
3610806:3610819	attL	AACGACAGCATCCA	NA	NA	NA	NA
WP_088202203.1|3611119_3611320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088201981.1|3611319_3611577_+	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_088201980.1|3611573_3611813_+	hypothetical protein	NA	A0A0U2BX35	Paracoccus_phage	40.4	3.1e-06
WP_153514721.1|3611812_3611989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153514719.1|3612376_3612520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157718312.1|3612471_3613206_+	ribonuclease H	NA	NA	NA	NA	NA
WP_088201976.1|3613202_3613715_+	DNA repair protein Rad52	NA	A0A1B1IQW3	uncultured_Mediterranean_phage	48.5	2.4e-24
WP_088201975.1|3613714_3614194_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	50.9	4.2e-39
WP_088201974.1|3614193_3614622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088201973.1|3614618_3614798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088201972.1|3614798_3615233_+	DUF968 domain-containing protein	NA	NA	NA	NA	NA
WP_088201971.1|3615222_3615807_+	hypothetical protein	NA	A0A0F6YP10	Sinorhizobium_phage	55.7	1.3e-13
WP_088201970.1|3615799_3616159_+	hypothetical protein	NA	B4UTV3	Rhizobium_phage	37.2	6.6e-05
WP_088202195.1|3616325_3616538_-	hypothetical protein	NA	B4UTV0	Rhizobium_phage	52.9	1.0e-13
WP_088202196.1|3616871_3617303_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_088202197.1|3617146_3618130_+|integrase	site-specific integrase	integrase	A0A291AUQ3	Sinorhizobium_phage	23.4	1.9e-09
3624658:3624671	attR	AACGACAGCATCCA	NA	NA	NA	NA
>prophage 1
NZ_CP021830	Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence	1484605	450851	526617	1484605	transposase	Corynebacterium_phage(22.22%)	58	NA	NA
WP_014528301.1|450851_452051_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	47.9	5.7e-93
WP_027990595.1|452579_453560_-	nod/exo genes transcriptional regulator SyrM	NA	NA	NA	NA	NA
WP_086017713.1|455660_455831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026029798.1|456289_457231_+	transcriptional regulator NodD3	NA	NA	NA	NA	NA
WP_003532793.1|457525_457771_-	protein SyrA	NA	NA	NA	NA	NA
WP_014528569.1|458819_459137_-	ferredoxin III, nif-specific	NA	NA	NA	NA	NA
WP_013845750.1|459811_460309_-	nitrogen fixation protein NifX	NA	NA	NA	NA	NA
WP_013845751.1|460740_462168_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA	NA
WP_013845752.1|462221_463763_-	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA	NA
WP_017263778.1|463853_465356_-	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA	NA
WP_003532770.1|465455_466349_-	nitrogenase iron protein	NA	NA	NA	NA	NA
WP_013845755.1|468568_469456_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_088202250.1|469436_470549_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_013845757.1|470560_471868_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_013845758.1|471880_472177_+	ferredoxin family protein	NA	NA	NA	NA	NA
WP_017263775.1|472398_474024_+	nif-specific transcriptional activator NifA	NA	NA	NA	NA	NA
WP_088202251.1|474240_475713_+	nitrogenase cofactor biosynthesis protein NifB	NA	NA	NA	NA	NA
WP_010967429.1|475744_475939_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_003532756.1|476126_476333_+	putative nitrogen fixation protein NifT	NA	NA	NA	NA	NA
WP_088202252.1|478086_480159_-	recombinase family protein	NA	K4JU73	Streptococcus_phage	21.2	1.7e-07
WP_014528559.1|480145_480325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153428678.1|480864_481011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086019128.1|481036_482225_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.8	9.5e-48
WP_013845763.1|483013_484486_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_013845764.1|484567_485647_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.3	2.8e-30
WP_014528554.1|485643_486444_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014528553.1|486445_487321_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_088202253.1|487413_488424_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003536940.1|488461_488788_-	NIPSNAP family protein	NA	NA	NA	NA	NA
WP_010967420.1|488793_490257_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_014528551.1|490262_491303_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014528550.1|491299_492235_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_014528549.1|492231_493065_-	alpha/beta fold hydrolase	NA	A0A1D8EVD1	Mycobacterium_phage	37.4	2.5e-07
WP_088202254.1|493083_493686_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_088202255.1|494439_495837_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_014528546.1|497034_497730_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015242447.1|498865_500527_-	nodulation protein NoeB	NA	NA	NA	NA	NA
WP_014528544.1|500533_501964_-	nodulation protein NoeA	NA	NA	NA	NA	NA
WP_003534891.1|501941_502157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014528543.1|502353_502905_-	nodulation acetyltransferase NodL	NA	NA	NA	NA	NA
WP_014528542.1|504227_505091_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_014528541.1|505094_505247_-	CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone	NA	NA	NA	NA	NA
WP_014528540.1|505258_505990_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_088202256.1|506001_507621_-	cytochrome-c oxidase, cbb3-type subunit I	NA	NA	NA	NA	NA
WP_014528537.1|508381_509017_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_074853794.1|509096_509444_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_088202257.1|510093_510786_-	stachydrine N-demethylase Stc3	NA	NA	NA	NA	NA
WP_026029811.1|512358_512640_-	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	40.9	8.0e-14
WP_086017704.1|513498_513996_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_013845291.1|514405_514663_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_014528532.1|514902_515502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014528531.1|515751_516207_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_014528301.1|516722_517922_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	47.9	5.7e-93
WP_014528529.1|519397_520285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088202258.1|520943_522635_+	type IV secretion system ATPase VirD4	NA	NA	NA	NA	NA
WP_014528527.1|523002_523728_-	response regulator	NA	W8CYM9	Bacillus_phage	30.7	1.1e-17
WP_011971014.1|524746_525052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011971015.1|525051_526617_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	44.6	2.5e-112
>prophage 2
NZ_CP021830	Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence	1484605	562112	644638	1484605	transposase,protease	Pseudomonas_phage(16.67%)	59	NA	NA
WP_086019128.1|562112_563302_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.8	9.5e-48
WP_011971014.1|563733_564039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011971015.1|564038_565604_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	44.6	2.5e-112
WP_011971016.1|565675_566023_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	54.9	1.0e-26
WP_011971017.1|566019_566403_-	IS66 family insertion sequence hypothetical protein	NA	A0A1B0YZU7	Pseudomonas_phage	40.8	1.5e-07
WP_014528497.1|567400_568126_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014528496.1|568976_569426_-	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	47.5	3.3e-17
WP_127529204.1|570049_570340_+|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
WP_088202261.1|570954_572373_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_014528033.1|573194_573398_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	51.7	8.0e-08
WP_003535607.1|574050_574572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017267611.1|574629_574839_-	hypothetical protein	NA	A0A291AUN9	Sinorhizobium_phage	86.2	3.3e-25
WP_127529153.1|574958_575318_-	hypothetical protein	NA	A0A291AUV7	Sinorhizobium_phage	68.3	1.7e-13
WP_088202262.1|575317_575578_-	chitinase	NA	A0A291AUV5	Sinorhizobium_phage	80.0	2.3e-31
WP_017267555.1|576320_576542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094179301.1|576979_577141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003535613.1|577430_577874_+	helix-turn-helix transcriptional regulator	NA	A0A1V0EEW3	Caulobacter_phage	51.7	2.7e-08
WP_015241594.1|579015_579462_-	DUF2280 domain-containing protein	NA	A0A125RNL6	Pseudomonas_phage	54.2	1.0e-31
WP_088202263.1|579431_579722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017267549.1|579746_580004_-	hypothetical protein	NA	F1C5D5	Cronobacter_phage	42.2	3.9e-15
WP_003535620.1|580530_580680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011970824.1|580895_581033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015241591.1|581399_581666_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_074935191.1|581995_582127_+	exopeptide	NA	NA	NA	NA	NA
WP_003535637.1|582326_582578_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_010968824.1|583750_584047_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	58.7	8.4e-22
WP_088202264.1|584122_585769_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	63.3	8.7e-177
WP_088199099.1|586755_588165_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	37.0	2.8e-30
WP_088202266.1|591799_592057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003537730.1|592566_593001_+	helix-turn-helix transcriptional regulator	NA	Q8W6G2	Sinorhizobium_phage	47.4	2.7e-24
WP_010967235.1|593313_593721_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_088202267.1|593720_593975_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_014528484.1|596627_596957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202268.1|597084_598695_-	tyrosinase family protein	NA	NA	NA	NA	NA
WP_088202269.1|598758_599151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086017712.1|602847_603405_-	NUDIX hydrolase	NA	A0A2H4IB87	Erwinia_phage	34.5	4.0e-09
WP_014528033.1|603923_604127_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	51.7	8.0e-08
WP_014528489.1|606917_607163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088202270.1|609030_610008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202271.1|611057_611420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014526646.1|613334_614594_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	30.1	1.5e-30
WP_088202272.1|615767_616871_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_088202567.1|619005_620535_+|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	43.6	2.2e-118
WP_012477343.1|620547_621285_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	47.5	1.1e-57
WP_088202568.1|624129_626094_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	36.0	3.5e-79
WP_088202273.1|626282_628250_-	acyl CoA:acetate/3-ketoacid CoA transferase	NA	NA	NA	NA	NA
WP_088202274.1|628257_629364_-	class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC	NA	NA	NA	NA	NA
WP_088202275.1|629360_629948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088202276.1|629954_631130_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_088202569.1|631180_632062_-	hypothetical protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	34.9	1.2e-10
WP_157718316.1|632313_632877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153428688.1|632984_633449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088202570.1|635420_635780_+	Nif11 family protein	NA	NA	NA	NA	NA
WP_088202279.1|636060_636420_+	Nif11 family protein	NA	NA	NA	NA	NA
WP_088202280.1|636472_637927_+	radical SAM family RiPP maturation amino acid epimerase	NA	NA	NA	NA	NA
WP_088202281.1|637923_639870_+	RiPP maturation radical SAM protein 1	NA	NA	NA	NA	NA
WP_088202282.1|640242_641475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088202284.1|642338_642980_+	transglycosylase SLT domain-containing protein	NA	L7TQZ1	Rhizobium_phage	45.9	5.5e-26
WP_088202285.1|643303_644638_-|transposase	ISNCY-like element ISRm17 family transposase	transposase	NA	NA	NA	NA
