assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002197065.1_ASM219706v1	NZ_CP021797	Sinorhizobium meliloti strain USDA1106 chromosome, complete genome	1	1481984-1482046	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh	Orphan	CCCTCTCCCCGCATGCGGGGAGA	23	1	1	1482007-1482023	NZ_CP021797.1_2906404-2906420	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,RT	NA,NA	NA|273aa|up_9|NZ_CP021797.1_1469398_1470217_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|602aa|up_8|NZ_CP021797.1_1470234_1472040_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|340aa|up_7|NZ_CP021797.1_1472148_1473168_-	PRK00292, glk, glucokinase; Provisional	NA|127aa|up_6|NZ_CP021797.1_1473229_1473610_-	COG1803, MgsA, Methylglyoxal synthase [Carbohydrate transport and metabolism]	NA|356aa|up_5|NZ_CP021797.1_1473730_1474798_-	COG3770, MepA, Murein endopeptidase [Cell envelope biogenesis, outer membrane]	NA|620aa|up_4|NZ_CP021797.1_1475089_1476949_+	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|361aa|up_3|NZ_CP021797.1_1477129_1478212_+	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|378aa|up_2|NZ_CP021797.1_1478211_1479345_+	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|543aa|up_1|NZ_CP021797.1_1479353_1480982_+	COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	NA|320aa|up_0|NZ_CP021797.1_1480992_1481952_+	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family	NA|285aa|down_0|NZ_CP021797.1_1482188_1483043_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|115aa|down_1|NZ_CP021797.1_1483051_1483396_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|464aa|down_2|NZ_CP021797.1_1483483_1484875_-	COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism]	NA|270aa|down_3|NZ_CP021797.1_1485005_1485815_+	COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]	NA|388aa|down_4|NZ_CP021797.1_1486071_1487235_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|328aa|down_5|NZ_CP021797.1_1487463_1488447_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|337aa|down_6|NZ_CP021797.1_1488454_1489465_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|490aa|down_7|NZ_CP021797.1_1489523_1490993_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|429aa|down_8|NZ_CP021797.1_1491054_1492341_-	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]	NA|512aa|down_9|NZ_CP021797.1_1493098_1494634_-	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]
GCF_002197065.1_ASM219706v1	NZ_CP021797	Sinorhizobium meliloti strain USDA1106 chromosome, complete genome	2	3324062-3324174	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh	Orphan	ATTCCTGTGACGAGCACAGGAATGAGGG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,RT	NA|313aa|up_2|NZ_CP021797.1_3320471_3321410_-,NA	NA|632aa|up_9|NZ_CP021797.1_3312536_3314432_+	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown]	NA|228aa|up_8|NZ_CP021797.1_3314464_3315148_-	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|232aa|up_7|NZ_CP021797.1_3315367_3316063_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|181aa|up_6|NZ_CP021797.1_3316174_3316717_+	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown]	NA|464aa|up_5|NZ_CP021797.1_3316921_3318313_+	TIGR01424, Glutathione_reductase_cytosolic, glutathione-disulfide reductase, plant	NA|458aa|up_4|NZ_CP021797.1_3318545_3319919_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|132aa|up_3|NZ_CP021797.1_3320054_3320450_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|313aa|up_2|NZ_CP021797.1_3320471_3321410_-	NA	NA|578aa|up_1|NZ_CP021797.1_3321515_3323249_-	COG4655, COG4655, Predicted membrane protein [Function unknown]	NA|141aa|up_0|NZ_CP021797.1_3323250_3323673_-	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion]	NA|640aa|down_0|NZ_CP021797.1_3324299_3326219_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|561aa|down_1|NZ_CP021797.1_3326487_3328170_+	PRK13981, PRK13981, NAD synthetase; Provisional	NA|276aa|down_2|NZ_CP021797.1_3328172_3329000_+	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|341aa|down_3|NZ_CP021797.1_3329010_3330033_-	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems	NA|398aa|down_4|NZ_CP021797.1_3330130_3331324_+	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|274aa|down_5|NZ_CP021797.1_3331695_3332517_+	PRK06198, PRK06198, short chain dehydrogenase; Provisional	NA|228aa|down_6|NZ_CP021797.1_3332814_3333498_+	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|376aa|down_7|NZ_CP021797.1_3333521_3334649_-	pfam11064, DUF2865, Protein of unknown function (DUF2865)	NA|215aa|down_8|NZ_CP021797.1_3334816_3335461_-	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|246aa|down_9|NZ_CP021797.1_3335617_3336355_-	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins
GCF_002197065.1_ASM219706v1	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1	1151274-1151376	1	CRISPRCasFinder	no		csa3,RT	Orphan	TCGGCGGCGGCGGCGGTGCGGGCGGCA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,RT	NA|133aa|up_2|NZ_CP021799.1_1144641_1145040_+,NA|196aa|down_2|NZ_CP021799.1_1156958_1157546_+,NA|198aa|down_4|NZ_CP021799.1_1158372_1158966_-	NA|399aa|up_9|NZ_CP021799.1_1131999_1133196_+	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional	NA|425aa|up_8|NZ_CP021799.1_1133223_1134498_+	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase	NA|486aa|up_7|NZ_CP021799.1_1134494_1135952_+	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|341aa|up_6|NZ_CP021799.1_1136669_1137692_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|388aa|up_5|NZ_CP021799.1_1137781_1138945_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|681aa|up_4|NZ_CP021799.1_1138950_1140993_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|1113aa|up_3|NZ_CP021799.1_1141177_1144516_+	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|133aa|up_2|NZ_CP021799.1_1144641_1145040_+	NA	NA|261aa|up_1|NZ_CP021799.1_1145128_1145911_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|384aa|up_0|NZ_CP021799.1_1145898_1147050_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|304aa|down_0|NZ_CP021799.1_1154361_1155273_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|405aa|down_1|NZ_CP021799.1_1155380_1156595_+	pfam04143, Sulf_transp, Sulphur transport	NA|196aa|down_2|NZ_CP021799.1_1156958_1157546_+	NA	NA|168aa|down_3|NZ_CP021799.1_1157714_1158218_+	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|198aa|down_4|NZ_CP021799.1_1158372_1158966_-	NA	NA|594aa|down_5|NZ_CP021799.1_1159462_1161244_+	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|742aa|down_6|NZ_CP021799.1_1161324_1163550_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|326aa|down_7|NZ_CP021799.1_1163546_1164524_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|208aa|down_8|NZ_CP021799.1_1164520_1165144_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|297aa|down_9|NZ_CP021799.1_1165343_1166234_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
GCF_002197065.1_ASM219706v1	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	2	1151469-1151550	2	CRISPRCasFinder	no		csa3,RT	Orphan	TCGGCGGCGGCGGCGGTGCGGGCGGCA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,RT	NA|133aa|up_2|NZ_CP021799.1_1144641_1145040_+,NA|196aa|down_2|NZ_CP021799.1_1156958_1157546_+,NA|198aa|down_4|NZ_CP021799.1_1158372_1158966_-	NA|399aa|up_9|NZ_CP021799.1_1131999_1133196_+	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional	NA|425aa|up_8|NZ_CP021799.1_1133223_1134498_+	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase	NA|486aa|up_7|NZ_CP021799.1_1134494_1135952_+	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|341aa|up_6|NZ_CP021799.1_1136669_1137692_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|388aa|up_5|NZ_CP021799.1_1137781_1138945_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|681aa|up_4|NZ_CP021799.1_1138950_1140993_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|1113aa|up_3|NZ_CP021799.1_1141177_1144516_+	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|133aa|up_2|NZ_CP021799.1_1144641_1145040_+	NA	NA|261aa|up_1|NZ_CP021799.1_1145128_1145911_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|384aa|up_0|NZ_CP021799.1_1145898_1147050_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|304aa|down_0|NZ_CP021799.1_1154361_1155273_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|405aa|down_1|NZ_CP021799.1_1155380_1156595_+	pfam04143, Sulf_transp, Sulphur transport	NA|196aa|down_2|NZ_CP021799.1_1156958_1157546_+	NA	NA|168aa|down_3|NZ_CP021799.1_1157714_1158218_+	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|198aa|down_4|NZ_CP021799.1_1158372_1158966_-	NA	NA|594aa|down_5|NZ_CP021799.1_1159462_1161244_+	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|742aa|down_6|NZ_CP021799.1_1161324_1163550_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|326aa|down_7|NZ_CP021799.1_1163546_1164524_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|208aa|down_8|NZ_CP021799.1_1164520_1165144_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|297aa|down_9|NZ_CP021799.1_1165343_1166234_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
GCF_002197065.1_ASM219706v1	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	3	1151649-1151753	3	CRISPRCasFinder	no		csa3,RT	Orphan	TCGGCGGCGGCGGCGGTGCGGGCGGCA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,RT	NA|133aa|up_2|NZ_CP021799.1_1144641_1145040_+,NA|196aa|down_2|NZ_CP021799.1_1156958_1157546_+,NA|198aa|down_4|NZ_CP021799.1_1158372_1158966_-	NA|399aa|up_9|NZ_CP021799.1_1131999_1133196_+	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional	NA|425aa|up_8|NZ_CP021799.1_1133223_1134498_+	TIGR02335, phosphonoacetate_hydrolase, phosphonoacetate hydrolase	NA|486aa|up_7|NZ_CP021799.1_1134494_1135952_+	TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase	NA|341aa|up_6|NZ_CP021799.1_1136669_1137692_+	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|388aa|up_5|NZ_CP021799.1_1137781_1138945_+	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|681aa|up_4|NZ_CP021799.1_1138950_1140993_+	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|1113aa|up_3|NZ_CP021799.1_1141177_1144516_+	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|133aa|up_2|NZ_CP021799.1_1144641_1145040_+	NA	NA|261aa|up_1|NZ_CP021799.1_1145128_1145911_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|384aa|up_0|NZ_CP021799.1_1145898_1147050_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|304aa|down_0|NZ_CP021799.1_1154361_1155273_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|405aa|down_1|NZ_CP021799.1_1155380_1156595_+	pfam04143, Sulf_transp, Sulphur transport	NA|196aa|down_2|NZ_CP021799.1_1156958_1157546_+	NA	NA|168aa|down_3|NZ_CP021799.1_1157714_1158218_+	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|198aa|down_4|NZ_CP021799.1_1158372_1158966_-	NA	NA|594aa|down_5|NZ_CP021799.1_1159462_1161244_+	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|742aa|down_6|NZ_CP021799.1_1161324_1163550_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|326aa|down_7|NZ_CP021799.1_1163546_1164524_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|208aa|down_8|NZ_CP021799.1_1164520_1165144_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|297aa|down_9|NZ_CP021799.1_1165343_1166234_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
