assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002196535.1_ASM219653v1	NZ_CP017720	Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 chromosome, complete genome	1	82767-82861	1	CRISPRCasFinder	no	cas3	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Unclear	ACCGGGTCTACTGGCTCAGGGTCTAC	26	0	0	NA	NA	NA	1	1	Unclear	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA|31aa|up_5|NZ_CP017720.1_77908_78001_+,NA|160aa|up_4|NZ_CP017720.1_78201_78681_+,NA|37aa|up_2|NZ_CP017720.1_80146_80257_+,NA|155aa|up_0|NZ_CP017720.1_81177_81642_+,NA|115aa|down_4|NZ_CP017720.1_90018_90363_+	NA|314aa|up_9|NZ_CP017720.1_71854_72796_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_CP017720.1_72838_73741_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_CP017720.1_74246_74942_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_CP017720.1_75160_77887_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_CP017720.1_77908_78001_+	NA	NA|160aa|up_4|NZ_CP017720.1_78201_78681_+	NA	NA|227aa|up_3|NZ_CP017720.1_78843_79524_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|37aa|up_2|NZ_CP017720.1_80146_80257_+	NA	NA|286aa|up_1|NZ_CP017720.1_80309_81167_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_CP017720.1_81177_81642_+	NA	NA|206aa|down_0|NZ_CP017720.1_84663_85281_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|344aa|down_1|NZ_CP017720.1_86584_87616_-	COG3943, COG3943, Virulence protein [General function prediction only]	NA|28aa|down_2|NZ_CP017720.1_87703_87787_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|117aa|down_3|NZ_CP017720.1_87802_88153_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|115aa|down_4|NZ_CP017720.1_90018_90363_+	NA	NA|461aa|down_5|NZ_CP017720.1_91062_92445_+	PRK11462, PRK11462, putative transporter; Provisional	NA|773aa|down_6|NZ_CP017720.1_92456_94775_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_7|NZ_CP017720.1_94877_96587_-	pfam05170, AsmA, AsmA family	NA|464aa|down_8|NZ_CP017720.1_96707_98099_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|402aa|down_9|NZ_CP017720.1_98326_99532_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)
GCF_002196535.1_ASM219653v1	NZ_CP017720	Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 chromosome, complete genome	2	938040-938923	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTATTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTNTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,14,14	14	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA	NA|383aa|up_9|NZ_CP017720.1_923832_924981_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP017720.1_925024_927781_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP017720.1_927838_929134_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|752aa|up_6|NZ_CP017720.1_929185_931441_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP017720.1_931503_931860_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP017720.1_931825_932122_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP017720.1_932889_933690_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP017720.1_933917_935555_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP017720.1_935637_936936_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP017720.1_937071_937743_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP017720.1_939020_939818_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP017720.1_939905_940268_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP017720.1_940703_942503_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP017720.1_942502_944215_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP017720.1_944290_945025_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP017720.1_945112_946066_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP017720.1_946449_949149_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP017720.1_949710_951246_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP017720.1_951262_951865_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|down_9|NZ_CP017720.1_951881_952946_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_002196535.1_ASM219653v1	NZ_CP017720	Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 chromosome, complete genome	3	955683-956382	3,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	11,11	11	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA	NA|245aa|up_9|NZ_CP017720.1_944290_945025_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP017720.1_945112_946066_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP017720.1_946449_949149_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP017720.1_949710_951246_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP017720.1_951262_951865_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|NZ_CP017720.1_951881_952946_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP017720.1_952955_953681_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|236aa|up_2|NZ_CP017720.1_953680_954388_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP017720.1_954384_955302_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP017720.1_955304_955598_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP017720.1_956396_957443_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP017720.1_957693_958602_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP017720.1_958611_960051_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP017720.1_960037_960643_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP017720.1_960660_961017_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP017720.1_961207_961519_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP017720.1_961537_962248_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP017720.1_962247_962727_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP017720.1_962723_963773_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP017720.1_963753_964515_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002196535.1_ASM219653v1	NZ_CP017720	Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 chromosome, complete genome	4	3854385-3854463	4	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	GGTTTATGCCTGATGGCGCTACGCTT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	NA,NA|141aa|down_5|NZ_CP017720.1_3861448_3861871_-	NA|784aa|up_9|NZ_CP017720.1_3840372_3842724_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|up_8|NZ_CP017720.1_3842897_3845804_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|up_7|NZ_CP017720.1_3845815_3846475_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|271aa|up_6|NZ_CP017720.1_3846569_3847382_-	PRK09430, djlA, co-chaperone DjlA	NA|787aa|up_5|NZ_CP017720.1_3847635_3849996_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|up_4|NZ_CP017720.1_3850049_3851336_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|up_3|NZ_CP017720.1_3851335_3852325_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|up_2|NZ_CP017720.1_3852321_3853143_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|up_1|NZ_CP017720.1_3853145_3853523_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|283aa|up_0|NZ_CP017720.1_3853533_3854382_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|down_0|NZ_CP017720.1_3854532_3855012_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|down_1|NZ_CP017720.1_3855210_3857073_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|down_2|NZ_CP017720.1_3857065_3857596_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|630aa|down_3|NZ_CP017720.1_3858148_3860038_-	COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]	NA|97aa|down_4|NZ_CP017720.1_3860934_3861225_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|141aa|down_5|NZ_CP017720.1_3861448_3861871_-	NA	NA|77aa|down_6|NZ_CP017720.1_3862164_3862395_-	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein	NA|447aa|down_7|NZ_CP017720.1_3862483_3863824_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|down_8|NZ_CP017720.1_3863971_3864259_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|down_9|NZ_CP017720.1_3864255_3865542_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional
