assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	1	893991-894110	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	CCGCATCCGGCAATCAACGTCTGATGCGACGCT	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|712aa|up_9|NZ_CP021844.1_883348_885484_+	PRK13578, PRK13578, ornithine decarboxylase; Provisional	NA|419aa|up_8|NZ_CP021844.1_885533_886790_-	TIGR00889, Putative_nucleoside_transporter_YegT, nucleoside transporter	NA|360aa|up_7|NZ_CP021844.1_886991_888071_-	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC	NA|92aa|up_6|NZ_CP021844.1_888135_888411_-	PRK05408, PRK05408, oxidative damage protection protein; Provisional	NA|351aa|up_5|NZ_CP021844.1_888438_889491_-	PRK10880, PRK10880, adenine DNA glycosylase	NA|240aa|up_4|NZ_CP021844.1_889651_890371_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|109aa|up_3|NZ_CP021844.1_890370_890697_+	PRK11702, PRK11702, hypothetical protein; Provisional	NA|240aa|up_2|NZ_CP021844.1_890880_891600_+	PRK10626, PRK10626, hypothetical protein; Provisional	NA|349aa|up_1|NZ_CP021844.1_891775_892822_+	PRK11096, ansB, L-asparaginase II; Provisional	NA|336aa|up_0|NZ_CP021844.1_892938_893946_+	pfam06717, DUF1202, Protein of unknown function (DUF1202)	NA|379aa|down_0|NZ_CP021844.1_894188_895325_-	PRK05660, PRK05660, radical SAM family heme chaperone HemW	NA|198aa|down_1|NZ_CP021844.1_895317_895911_-	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|97aa|down_2|NZ_CP021844.1_895918_896209_-	PRK05090, PRK05090, hypothetical protein; Validated	NA|189aa|down_3|NZ_CP021844.1_896205_896772_-	pfam02325, YGGT, YGGT family	NA|235aa|down_4|NZ_CP021844.1_896789_897494_-	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins	NA|327aa|down_5|NZ_CP021844.1_897511_898492_+	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|139aa|down_6|NZ_CP021844.1_898675_899092_-	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|188aa|down_7|NZ_CP021844.1_899091_899655_-	PRK00228, PRK00228, YqgE/AlgH family protein	NA|317aa|down_8|NZ_CP021844.1_899763_900714_-	PRK05246, PRK05246, glutathione synthetase; Provisional	NA|244aa|down_9|NZ_CP021844.1_900726_901458_-	TIGR00046, Ribosomal_RNA_small_subunit_methyltransferase_E, RNA methyltransferase, RsmE family
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	2	1111393-1111665	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|83aa|up_9|NZ_CP021844.1_1101884_1102133_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_8|NZ_CP021844.1_1102132_1102468_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_7|NZ_CP021844.1_1102539_1103331_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|NZ_CP021844.1_1103558_1105196_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|NZ_CP021844.1_1105283_1106582_+	PRK00077, eno, enolase; Provisional	NA|305aa|up_4|NZ_CP021844.1_1106641_1107556_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP021844.1_1107552_1108701_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|293aa|up_2|NZ_CP021844.1_1108715_1109594_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP021844.1_1109607_1110210_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP021844.1_1110382_1111054_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP021844.1_1112303_1113782_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP021844.1_1113808_1115086_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP021844.1_1115403_1116189_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP021844.1_1116258_1117713_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP021844.1_1117806_1119144_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP021844.1_1119121_1119901_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP021844.1_1119897_1120758_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP021844.1_1120904_1121480_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP021844.1_1121496_1121757_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP021844.1_1121747_1123019_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	3	1137357-1137812	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|245aa|up_9|NZ_CP021844.1_1127362_1128097_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP021844.1_1128362_1128515_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP021844.1_1128706_1131406_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP021844.1_1131495_1133058_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP021844.1_1133054_1133591_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP021844.1_1133605_1134661_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP021844.1_1134671_1135418_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP021844.1_1135399_1136050_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP021844.1_1136046_1136970_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP021844.1_1136966_1137260_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP021844.1_1137893_1138931_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP021844.1_1139182_1140091_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP021844.1_1140092_1141520_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP021844.1_1141519_1142125_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP021844.1_1142174_1142498_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP021844.1_1142691_1143003_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP021844.1_1143021_1143732_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP021844.1_1143731_1144211_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP021844.1_1144207_1145257_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP021844.1_1145237_1145999_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	4	1741075-1741192	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|397aa|up_9|NZ_CP021844.1_1729751_1730942_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_8|NZ_CP021844.1_1730938_1732198_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_7|NZ_CP021844.1_1732187_1733816_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_6|NZ_CP021844.1_1734088_1735447_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|360aa|up_5|NZ_CP021844.1_1735451_1736531_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|293aa|up_4|NZ_CP021844.1_1736575_1737454_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|397aa|up_3|NZ_CP021844.1_1737618_1738809_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|217aa|up_2|NZ_CP021844.1_1738889_1739540_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP021844.1_1739593_1739848_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP021844.1_1739847_1740978_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP021844.1_1741211_1743497_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|241aa|down_1|NZ_CP021844.1_1748085_1748808_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_2|NZ_CP021844.1_1748954_1751582_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_3|NZ_CP021844.1_1751730_1753419_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_4|NZ_CP021844.1_1753415_1754039_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_5|NZ_CP021844.1_1754182_1758577_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_6|NZ_CP021844.1_1758577_1760227_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP021844.1_1760231_1761008_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP021844.1_1761081_1762266_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP021844.1_1762296_1763619_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	5	1972830-1972964	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	TGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|249aa|up_9|NZ_CP021844.1_1961600_1962347_+	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|183aa|up_8|NZ_CP021844.1_1962362_1962911_+	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|374aa|up_7|NZ_CP021844.1_1962937_1964059_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|322aa|up_6|NZ_CP021844.1_1964061_1965027_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|160aa|up_5|NZ_CP021844.1_1965029_1965509_+	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|408aa|up_4|NZ_CP021844.1_1965505_1966729_+	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|479aa|up_3|NZ_CP021844.1_1966731_1968168_+	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|457aa|up_2|NZ_CP021844.1_1968448_1969819_+	PRK15414, PRK15414, phosphomannomutase	NA|465aa|up_1|NZ_CP021844.1_1969873_1971268_+	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|493aa|up_0|NZ_CP021844.1_1971269_1972748_+	PRK10459, PRK10459, MOP flippase family protein	NA|427aa|down_0|NZ_CP021844.1_1973024_1974305_+	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|407aa|down_1|NZ_CP021844.1_1974301_1975522_+	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|465aa|down_2|NZ_CP021844.1_1975532_1976927_+	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|332aa|down_3|NZ_CP021844.1_1977084_1978080_+	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|298aa|down_4|NZ_CP021844.1_1978322_1979216_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|362aa|down_5|NZ_CP021844.1_1979587_1980673_+	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|300aa|down_6|NZ_CP021844.1_1980672_1981572_+	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|293aa|down_7|NZ_CP021844.1_1981629_1982508_+	PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional	NA|181aa|down_8|NZ_CP021844.1_1982512_1983055_+	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|520aa|down_9|NZ_CP021844.1_1983128_1984688_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	6	2411600-2411723	6	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA|30aa|down_7|NZ_CP021844.1_2420619_2420709_+	NA|471aa|up_9|NZ_CP021844.1_2401053_2402466_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP021844.1_2403022_2403232_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP021844.1_2403687_2404314_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP021844.1_2404334_2406437_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP021844.1_2406440_2407088_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP021844.1_2407151_2407820_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP021844.1_2407816_2408602_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP021844.1_2408605_2409418_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP021844.1_2409429_2411034_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP021844.1_2411159_2411465_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP021844.1_2412037_2413294_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP021844.1_2413334_2414708_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP021844.1_2414922_2415564_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP021844.1_2415603_2416752_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP021844.1_2417042_2418254_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP021844.1_2418366_2419299_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP021844.1_2419295_2420321_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP021844.1_2420619_2420709_+	NA	NA|390aa|down_8|NZ_CP021844.1_2420874_2422044_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP021844.1_2422189_2422771_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	7	3095697-3095788	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA|69aa|up_9|NZ_CP021844.1_3084948_3085155_-,NA	NA|69aa|up_9|NZ_CP021844.1_3084948_3085155_-	NA	NA|1321aa|up_8|NZ_CP021844.1_3085212_3089175_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP021844.1_3089213_3089852_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP021844.1_3090139_3091231_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP021844.1_3091230_3091923_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP021844.1_3091934_3092321_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP021844.1_3092328_3093129_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP021844.1_3093138_3093729_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP021844.1_3093739_3094234_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP021844.1_3094254_3095583_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP021844.1_3096211_3096808_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP021844.1_3096828_3097056_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP021844.1_3097093_3098335_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|418aa|down_3|NZ_CP021844.1_3098627_3099881_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP021844.1_3100140_3101061_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP021844.1_3101060_3101366_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP021844.1_3101517_3102117_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP021844.1_3102113_3104660_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP021844.1_3104659_3105832_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP021844.1_3105961_3106654_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	8	3235742-3235890	8,3	CRISPRCasFinder,PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|431aa|up_9|NZ_CP021844.1_3220786_3222079_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP021844.1_3222169_3223513_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP021844.1_3223523_3224135_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP021844.1_3224289_3228357_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP021844.1_3228491_3228986_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP021844.1_3229530_3230496_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP021844.1_3230618_3232385_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP021844.1_3232385_3234107_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP021844.1_3234148_3234853_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP021844.1_3235137_3235356_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP021844.1_3236104_3238381_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP021844.1_3238411_3238732_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP021844.1_3239054_3239279_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP021844.1_3239351_3241298_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP021844.1_3241294_3242410_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP021844.1_3242560_3243517_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP021844.1_3243513_3245172_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP021844.1_3245597_3246293_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP021844.1_3246749_3247649_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP021844.1_3247792_3249445_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	9	4038300-4038406	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	CCCTCTCCCTGCGGGAGAGGGTTAGGGTGAGGGG	34	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA|310aa|up_0|NZ_CP021844.1_4037274_4038204_+,NA	NA|262aa|up_9|NZ_CP021844.1_4030998_4031784_-	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|246aa|up_8|NZ_CP021844.1_4031962_4032700_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|401aa|up_7|NZ_CP021844.1_4032699_4033902_-	PRK06803, flgE, flagellar basal body protein FlaE	NA|238aa|up_6|NZ_CP021844.1_4034045_4034759_-	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|144aa|up_5|NZ_CP021844.1_4034758_4035190_-	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|112aa|up_4|NZ_CP021844.1_4035192_4035528_-	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|246aa|up_3|NZ_CP021844.1_4035609_4036347_+	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|93aa|up_2|NZ_CP021844.1_4036427_4036706_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|143aa|up_1|NZ_CP021844.1_4036718_4037147_+	pfam05130, FlgN, FlgN protein	NA|310aa|up_0|NZ_CP021844.1_4037274_4038204_+	NA	NA|815aa|down_0|NZ_CP021844.1_4038464_4040909_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|359aa|down_1|NZ_CP021844.1_4041309_4042386_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|135aa|down_2|NZ_CP021844.1_4042379_4042784_-	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|145aa|down_3|NZ_CP021844.1_4042786_4043221_-	TIGR02473, conserved_hypothetical_protein, flagellar export protein FliJ	NA|446aa|down_4|NZ_CP021844.1_4043223_4044561_-	PRK07196, fliI, flagellar protein export ATPase FliI	NA|237aa|down_5|NZ_CP021844.1_4044553_4045264_-	PRK13386, fliH, flagellar assembly protein H; Provisional	NA|337aa|down_6|NZ_CP021844.1_4045267_4046278_-	PRK07194, fliG, flagellar motor switch protein G; Reviewed	NA|552aa|down_7|NZ_CP021844.1_4046255_4047911_-	PRK07193, fliF, flagellar MS-ring protein; Reviewed	NA|114aa|down_8|NZ_CP021844.1_4047915_4048257_-	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|329aa|down_9|NZ_CP021844.1_4048271_4049258_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	10	4055962-4056074	10	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	GTTTGTAGGCATGATAAGACGCGCCAGCGTCGCATCAGGCATC	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA	NA|552aa|up_9|NZ_CP021844.1_4046255_4047911_-	PRK07193, fliF, flagellar MS-ring protein; Reviewed	NA|114aa|up_8|NZ_CP021844.1_4047915_4048257_-	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|329aa|up_7|NZ_CP021844.1_4048271_4049258_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|284aa|up_6|NZ_CP021844.1_4049645_4050497_+	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term	NA|124aa|up_5|NZ_CP021844.1_4050489_4050861_+	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN	NA|251aa|up_4|NZ_CP021844.1_4050857_4051610_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|91aa|up_3|NZ_CP021844.1_4051612_4051885_+	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|261aa|up_2|NZ_CP021844.1_4051886_4052669_+	COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]	NA|380aa|up_1|NZ_CP021844.1_4052658_4053798_+	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|698aa|up_0|NZ_CP021844.1_4053781_4055875_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP021844.1_4056083_4056581_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|250aa|down_1|NZ_CP021844.1_4056756_4057506_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_CP021844.1_4057715_4057976_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NZ_CP021844.1_4057978_4058257_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NZ_CP021844.1_4058412_4059153_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NZ_CP021844.1_4059123_4059891_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NZ_CP021844.1_4060096_4060675_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NZ_CP021844.1_4060914_4063359_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NZ_CP021844.1_4063401_4063875_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NZ_CP021844.1_4064028_4064799_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	11	4268965-4269099	11	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA|190aa|up_7|NZ_CP021844.1_4259327_4259897_-,NA|251aa|down_4|NZ_CP021844.1_4276392_4277145_-	NA|44aa|up_9|NZ_CP021844.1_4257220_4257352_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|553aa|up_8|NZ_CP021844.1_4257440_4259099_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|190aa|up_7|NZ_CP021844.1_4259327_4259897_-	NA	NA|328aa|up_6|NZ_CP021844.1_4260268_4261252_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP021844.1_4261227_4262838_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP021844.1_4262821_4263520_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP021844.1_4263633_4264398_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP021844.1_4264483_4265362_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP021844.1_4265699_4267400_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP021844.1_4267410_4268913_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP021844.1_4269112_4269808_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP021844.1_4269882_4272234_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP021844.1_4272397_4275304_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP021844.1_4275315_4275975_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|251aa|down_4|NZ_CP021844.1_4276392_4277145_-	NA	NA|272aa|down_5|NZ_CP021844.1_4277439_4278255_-	PRK09430, djlA, co-chaperone DjlA	NA|790aa|down_6|NZ_CP021844.1_4278509_4280879_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_7|NZ_CP021844.1_4280931_4282218_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_8|NZ_CP021844.1_4282217_4283207_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_9|NZ_CP021844.1_4283203_4284025_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCF_002196495.1_ASM219649v1	NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	12	4497615-4497764	12	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL,RT	NA,NA|597aa|down_6|NZ_CP021844.1_4504867_4506658_-	NA|340aa|up_9|NZ_CP021844.1_4485805_4486825_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP021844.1_4486828_4487392_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP021844.1_4487608_4488640_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP021844.1_4488663_4489428_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP021844.1_4489492_4490812_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP021844.1_4490878_4491877_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP021844.1_4491954_4493457_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP021844.1_4493617_4494700_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP021844.1_4494699_4495800_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP021844.1_4496066_4497578_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP021844.1_4497931_4498375_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP021844.1_4498374_4501230_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP021844.1_4501285_4502482_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP021844.1_4502674_4503178_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP021844.1_4503223_4503640_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|338aa|down_5|NZ_CP021844.1_4503801_4504815_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|597aa|down_6|NZ_CP021844.1_4504867_4506658_-	NA	NA|151aa|down_7|NZ_CP021844.1_4506780_4507233_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP021844.1_4507377_4507971_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP021844.1_4508041_4508755_+	PRK12742, PRK12742, SDR family oxidoreductase
