The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	5167363	1257786	1336728	5167363	head,capsid,tail,tRNA,holin,plate,terminase,portal,integrase,protease	Shigella_phage(42.31%)	90	1248891:1248905	1297199:1297213
1248891:1248905	attL	ACTATTGTTTCAGAA	NA	NA	NA	NA
WP_088172161.1|1257786_1259028_-|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	48.6	9.1e-102
WP_032211342.1|1259388_1260075_-	RloB domain-containing protein	NA	NA	NA	NA	NA
WP_044527605.1|1260074_1261340_-	ATP-binding protein	NA	V9QJ85	Oenococcus_phage	29.9	9.5e-06
WP_054632495.1|1261530_1262727_-	DUF3596 domain-containing protein	NA	I6PDJ1	Cronobacter_phage	66.3	1.8e-147
WP_001331174.1|1262687_1262894_-	hypothetical protein	NA	I6PBM8	Cronobacter_phage	70.3	6.9e-23
WP_001331173.1|1262953_1263169_-	hypothetical protein	NA	K7PLX1	Enterobacteria_phage	65.1	1.2e-14
WP_063118231.1|1263165_1263528_-	hypothetical protein	NA	A5LH61	Enterobacteria_phage	97.4	2.0e-65
WP_000008235.1|1263518_1264055_-	5'-deoxynucleotidase	NA	S5MW55	Escherichia_phage	98.9	8.2e-100
WP_000016389.1|1264599_1265034_+	hypothetical protein	NA	U5P096	Shigella_phage	100.0	8.4e-79
WP_000549626.1|1265005_1265212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000450735.1|1265459_1266086_-	LexA family transcriptional regulator	NA	K7PM82	Enterobacteria_phage	48.8	5.5e-47
WP_000205494.1|1266183_1266384_+	cell division protein	NA	NA	NA	NA	NA
WP_001434539.1|1266421_1266973_+	hypothetical protein	NA	S5FXP0	Shigella_phage	98.9	7.6e-101
WP_001250269.1|1267148_1267328_+	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	7.8e-15
WP_088177430.1|1267317_1268259_+	helix-turn-helix domain-containing protein	NA	S5FM81	Shigella_phage	99.4	9.5e-144
WP_001305611.1|1268255_1268750_+	PerC family transcriptional regulator	NA	A0A291AWV6	Escherichia_phage	99.4	1.5e-87
WP_001305610.1|1268749_1269403_+	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	99.1	3.3e-127
WP_000210154.1|1269399_1269726_+	LexA family transcriptional regulator	NA	A0A0N7KZF7	Stx2-converting_phage	99.1	2.7e-53
WP_040074681.1|1269722_1270112_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A291AX14	Escherichia_phage	98.4	4.6e-68
WP_001061438.1|1270131_1270941_+	KilA-N domain-containing protein	NA	A5LH75	Enterobacteria_phage	100.0	8.2e-152
WP_074613456.1|1270948_1271938_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	99.1	6.2e-194
WP_024225791.1|1271956_1272298_+	antitermination protein	NA	A0A0P0ZCW0	Stx2-converting_phage	87.6	6.0e-56
WP_137503319.1|1272324_1273053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024225789.1|1273061_1273325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001120491.1|1273617_1273944_+|holin	phage holin, lambda family	holin	S5FM86	Shigella_phage	99.1	6.8e-57
WP_021563578.1|1273947_1274424_+	glycoside hydrolase family protein	NA	U5P0A9	Shigella_phage	99.4	2.9e-88
WP_012599940.1|1274407_1274800_+	DUF2570 domain-containing protein	NA	Q8SBD9	Shigella_phage	86.2	1.4e-53
WP_016159276.1|1275325_1275760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001135210.1|1275887_1276238_+	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	96.6	3.1e-63
WP_000929180.1|1276363_1276858_+|terminase	phage terminase small subunit P27 family	terminase	Q8SBI1	Shigella_phage	99.4	6.6e-88
WP_089078575.1|1277091_1278588_+|terminase	terminase large subunit	terminase	U5P0Q5	Shigella_phage	98.8	3.1e-290
WP_015364399.1|1278735_1279962_+|portal	phage portal protein	portal	Q8SBI0	Shigella_phage	99.3	4.9e-241
WP_000999805.1|1279954_1280557_+|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	100.0	6.8e-111
WP_000766100.1|1280567_1281797_+|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	99.3	7.6e-226
WP_000924829.1|1281876_1282200_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q8SBH7	Shigella_phage	99.1	1.7e-52
WP_000702395.1|1282196_1282607_+|head	phage head closure protein	head	M1FJ87	Enterobacteria_phage	93.4	5.7e-69
WP_000224835.1|1282581_1283088_+	hypothetical protein	NA	M1FPE2	Enterobacteria_phage	92.9	1.3e-83
WP_000779296.1|1283084_1283645_+	hypothetical protein	NA	Q8SBH4	Shigella_phage	100.0	6.1e-106
WP_000497751.1|1283653_1283824_+	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	100.0	9.3e-26
WP_054625654.1|1283807_1285304_+|tail	phage tail protein	tail	M1FN90	Enterobacteria_phage	98.2	9.5e-271
WP_000090998.1|1285303_1285660_+	hypothetical protein	NA	U5P076	Shigella_phage	100.0	5.3e-63
WP_000661054.1|1285659_1285929_+|tail	phage tail assembly protein	tail	M1FPE4	Enterobacteria_phage	100.0	3.5e-43
WP_024244102.1|1286070_1287903_+|tail	phage tail tape measure protein	tail	S5FM63	Shigella_phage	97.4	9.1e-300
WP_000679479.1|1287994_1288525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063118235.1|1288586_1289915_+	DNA circularization protein	NA	Q8SBG8	Shigella_phage	99.1	1.9e-246
WP_020219053.1|1289911_1290991_+|plate	baseplate protein	plate	U5P0H6	Shigella_phage	99.4	3.4e-206
WP_001259084.1|1290990_1291539_+|plate	phage baseplate assembly protein	plate	U5P081	Shigella_phage	98.9	5.1e-97
WP_000424747.1|1291538_1291964_+	hypothetical protein	NA	U5P0R9	Shigella_phage	99.3	2.0e-80
WP_088172159.1|1291950_1293009_+|plate	baseplate J/gp47 family protein	plate	M1FQW3	Enterobacteria_phage	98.6	1.8e-199
WP_000383572.1|1292999_1293584_+	YmfQ family protein	NA	O22003	Shigella_phage	99.5	2.4e-113
WP_021546515.1|1294172_1294601_+|tail	tail fiber assembly protein	tail	U5P083	Shigella_phage	50.7	8.1e-26
WP_063118164.1|1294572_1295175_-|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	90.0	2.7e-99
WP_063118165.1|1295174_1295720_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	57.5	3.4e-53
WP_000904997.1|1295749_1296304_+	site-specific DNA recombinase	NA	A0A1S6L009	Salmonella_phage	87.8	8.2e-87
WP_001137529.1|1296502_1296715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000054185.1|1296799_1297144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021530618.1|1297195_1298227_-	hypothetical protein	NA	NA	NA	NA	NA
1297199:1297213	attR	TTCTGAAACAATAGT	NA	NA	NA	NA
WP_000162574.1|1299013_1299496_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
WP_021577828.1|1299627_1300104_+	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA	NA
WP_001117838.1|1300093_1300384_+	RnfH family protein	NA	NA	NA	NA	NA
WP_001203437.1|1300445_1300787_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_021577827.1|1300935_1302597_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001059169.1|1302682_1303561_-	NAD(+) kinase	NA	NA	NA	NA	NA
WP_001307957.1|1303683_1304277_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_010723175.1|1304331_1305618_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001338897.1|1305639_1306431_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_000460035.1|1306597_1307959_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000256450.1|1308095_1308344_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000043335.1|1308362_1308911_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000264777.1|1308941_1309709_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000065253.1|1309750_1310098_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000589826.1|1310174_1310657_-	OmpA family protein	NA	NA	NA	NA	NA
WP_021577824.1|1311904_1312423_-	YfiR family protein	NA	NA	NA	NA	NA
WP_024248389.1|1312572_1312938_-	DUF2799 domain-containing protein	NA	NA	NA	NA	NA
WP_001168032.1|1313147_1314218_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.2	6.9e-90
WP_000225221.1|1314228_1315350_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_000200120.1|1315392_1316553_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_001386991.1|1316651_1316699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000178456.1|1316802_1317144_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_000197686.1|1317414_1318152_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000079112.1|1318286_1319267_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_021577822.1|1319263_1319995_+	polyphenol oxidase	NA	NA	NA	NA	NA
WP_001235102.1|1320124_1322698_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.3	2.6e-127
WP_000841103.1|1328472_1329771_+	alpha-ketoglutarate permease	NA	Q6JIH2	Burkholderia_virus	32.2	1.3e-45
WP_001300818.1|1329767_1330091_-	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_021577821.1|1330136_1331492_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_000082981.1|1331605_1334266_-	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_021577820.1|1334297_1334996_-	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_001098726.1|1335064_1335484_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	38.5	2.8e-15
WP_000997418.1|1335690_1336728_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
>prophage 2
NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	5167363	1574456	1655658	5167363	head,capsid,tRNA,holin,transposase,lysis,terminase,portal,integrase,protease	Enterobacteria_phage(47.69%)	99	1573916:1573931	1624022:1624037
1573916:1573931	attL	CCCTGCAGGAATCGAA	NA	NA	NA	NA
WP_088172478.1|1574456_1575482_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	87.8	2.1e-168
WP_024235421.1|1575511_1576477_-	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
WP_023203535.1|1576923_1577196_-	ogr/Delta-like zinc finger family protein	NA	A0A2I8TV89	Erwinia_phage	44.9	6.3e-08
WP_023203536.1|1577195_1577957_-|capsid	phage capsid morphogenesis protein	capsid	NA	NA	NA	NA
WP_023203537.1|1578357_1581030_-	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	34.4	2.1e-58
WP_023203538.1|1581026_1581410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023203539.1|1581406_1581691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023203540.1|1581722_1582082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001118612.1|1582074_1582251_-	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	55.6	4.2e-05
WP_024235422.1|1582382_1582562_+	hypothetical protein	NA	A0A2H4JB52	uncultured_Caudovirales_phage	54.2	2.2e-09
WP_023203543.1|1582613_1582823_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_024235423.1|1582930_1583905_-	hypothetical protein	NA	A0A1W6JPD1	Morganella_phage	53.8	6.6e-07
WP_088172477.1|1583979_1585251_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	38.9	8.2e-74
WP_001163428.1|1585523_1585724_-	response regulator inhibitor TorI	NA	K7P7V0	Enterobacteria_phage	100.0	2.4e-33
WP_088172475.1|1585781_1585949_-	hypothetical protein	NA	A0A0K2FJ46	Enterobacteria_phage	100.0	2.9e-27
WP_088172474.1|1586136_1586703_-	DUF551 domain-containing protein	NA	Q76H45	Enterobacteria_phage	61.4	2.7e-61
WP_000118152.1|1586704_1587004_-	hypothetical protein	NA	Q716F3	Shigella_phage	100.0	1.5e-58
WP_001214453.1|1587000_1587168_-	DUF2737 family protein	NA	Q716F2	Shigella_phage	100.0	1.7e-24
WP_088172473.1|1587178_1587472_-	DUF2856 family protein	NA	K7P845	Enterobacteria_phage	97.9	2.1e-49
WP_088172472.1|1587564_1588026_-	single-stranded DNA-binding protein	NA	K7PHK1	Enterobacteria_phage	98.0	1.3e-69
WP_000365291.1|1588026_1588734_-	recombinase	NA	Q716E7	Shigella_phage	100.0	7.6e-138
WP_001243355.1|1588988_1589141_-	host cell division inhibitory peptide Kil	NA	A5VWA5	Enterobacteria_phage	100.0	4.7e-21
WP_000638547.1|1589125_1589257_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	A5VWA4	Enterobacteria_phage	100.0	1.4e-16
WP_078398964.1|1589281_1590250_-	cell envelope biogenesis protein TolA	NA	G5DA88	Enterobacteria_phage	100.0	7.7e-56
WP_053878063.1|1590539_1590830_-	hypothetical protein	NA	K7PH98	Enterobacteria_phage	77.8	1.6e-33
WP_000394299.1|1590869_1591121_-	hypothetical protein	NA	A4KWV4	Enterobacteria_phage	100.0	5.6e-43
WP_000219338.1|1591129_1591429_-	hypothetical protein	NA	A5VW99	Enterobacteria_phage	100.0	9.0e-32
WP_000856967.1|1591743_1592394_-	LexA family transcriptional regulator	NA	A5VW98	Enterobacteria_phage	100.0	1.1e-122
WP_000276886.1|1592474_1592660_+	hypothetical protein	NA	A5VW97	Enterobacteria_phage	100.0	1.6e-26
WP_015966855.1|1592768_1593047_+	ABC transporter	NA	K7P8A8	Enterobacteria_phage	100.0	1.1e-42
WP_088172471.1|1593229_1594051_+	replication protein	NA	K7PJZ3	Enterobacterial_phage	98.9	3.7e-152
WP_088172470.1|1594047_1595421_+	AAA family ATPase	NA	K7P7K2	Enterobacteria_phage	96.5	1.2e-243
WP_088172469.1|1595502_1595688_+	hypothetical protein	NA	A0A1B1W2E1	Salmonella_phage	70.5	2.1e-18
WP_088172468.1|1595716_1595965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088172467.1|1595976_1596243_+	hypothetical protein	NA	A0A2I6PIG0	Escherichia_phage	65.7	7.8e-27
WP_023145903.1|1596247_1596502_+	hypothetical protein	NA	A0A2I6PIF4	Escherichia_phage	96.4	2.9e-39
WP_088172466.1|1596482_1596923_+	recombination protein NinB	NA	A0A2I6PIF6	Escherichia_phage	98.6	2.9e-79
WP_001752315.1|1596919_1597447_+	phage N-6-adenine-methyltransferase	NA	A0A1I9LJP9	Stx_converting_phage	99.4	4.7e-100
WP_001254220.1|1597443_1597620_+	NinE family protein	NA	K7PHE6	Enterobacteria_phage	100.0	2.7e-28
WP_125134125.1|1597622_1597991_+	DUF2591 domain-containing protein	NA	I6R9D1	Salmonella_phage	72.1	1.5e-44
WP_000950943.1|1597983_1598160_+	protein ninF	NA	A0A220NRM2	Escherichia_phage	98.3	2.5e-26
WP_032198668.1|1598152_1598875_+	DNA-binding protein	NA	K7PL51	Enterobacteria_phage	93.3	1.3e-121
WP_000002244.1|1598874_1599165_+	DUF1364 domain-containing protein	NA	A0A192Y6R9	Salmonella_phage	100.0	1.0e-51
WP_001008193.1|1599161_1599524_+	RusA family crossover junction endodeoxyribonuclease	NA	A5VW85	Enterobacteria_phage	99.2	2.7e-62
WP_088172464.1|1599520_1599709_+	protein ninH	NA	A5VW84	Enterobacteria_phage	98.4	1.6e-26
WP_088172463.1|1599705_1600224_+	DUF1133 family protein	NA	A0A192Y911	Salmonella_phage	98.3	1.0e-94
WP_000783734.1|1600685_1601009_+|holin	phage holin, lambda family	holin	G5DA93	Enterobacteria_phage	100.0	1.3e-52
WP_088172462.1|1600992_1601469_+	glycoside hydrolase family protein	NA	G5DA94	Enterobacteria_phage	99.4	1.7e-88
WP_029701281.1|1601465_1601933_+|lysis	lysis protein	lysis	A0A291AWW3	Escherichia_phage	95.5	6.7e-74
WP_001139680.1|1601920_1602073_+	hypothetical protein	NA	K7PKL2	Enterobacteria_phage	100.0	1.2e-21
WP_000807788.1|1602381_1602624_+	DUF2560 family protein	NA	A5VW77	Enterobacteria_phage	100.0	1.3e-36
WP_000091987.1|1602625_1602805_+	hypothetical protein	NA	A0A088CPS9	Enterobacteria_phage	100.0	3.7e-25
WP_001436504.1|1602828_1603251_+	hypothetical protein	NA	Q716H4	Shigella_phage	100.0	7.2e-75
WP_088172461.1|1603247_1604660_+|terminase	PBSX family phage terminase large subunit	terminase	Q716H3	Shigella_phage	99.8	9.8e-278
WP_088172460.1|1604662_1606789_+|portal	portal protein	portal	Q9AYZ9	Salmonella_phage	99.4	0.0e+00
WP_088172459.1|1606802_1607687_+|capsid	phage capsid protein	capsid	Q716H1	Shigella_phage	99.7	8.1e-145
WP_088172458.1|1607698_1608970_+|head	head protein	head	Q9AYZ7	Salmonella_phage	95.5	6.9e-230
WP_000375639.1|1609012_1609198_+	hypothetical protein	NA	Q716G9	Shigella_phage	98.4	4.6e-26
WP_088172348.1|1609518_1610731_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	98.0	5.1e-166
WP_088172457.1|1610976_1612395_+	hypothetical protein	NA	A0A088CQ70	Enterobacteria_phage	98.9	1.7e-274
WP_000785555.1|1612394_1613243_+	Packaged DNA stabilization protein gp26	NA	Q716G6	Shigella_phage	92.9	2.6e-100
WP_000614033.1|1613242_1613698_+	DUF2824 family protein	NA	A5VW67	Enterobacteria_phage	99.3	6.7e-87
WP_088172456.1|1613700_1614393_+	DNA transfer protein	NA	G5DA80	Enterobacteria_phage	99.1	6.0e-111
WP_088172455.1|1614402_1615809_+	acyltransferase	NA	I6RSG0	Salmonella_phage	55.8	8.4e-128
WP_088172454.1|1615808_1617653_+	DNA transfer protein	NA	A0A192Y934	Salmonella_phage	74.1	2.6e-246
WP_000749291.1|1617667_1618153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000287055.1|1618223_1618490_-	Arc family DNA-binding protein	NA	A0A088CPT2	Enterobacteria_phage	90.5	9.5e-33
WP_060618121.1|1618621_1619131_-	HNH endonuclease	NA	A0A291AXK3	Shigella_phage	44.9	4.5e-31
WP_088172453.1|1621533_1622616_+	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	26.9	5.8e-20
WP_088172452.1|1622683_1623853_-|integrase	prophage integrase IntS	integrase	Q716F9	Shigella_phage	98.7	2.3e-219
WP_000368131.1|1624164_1625097_-	transporter	NA	E7DYY8	Enterobacteria_phage	100.0	1.2e-167
1624022:1624037	attR	CCCTGCAGGAATCGAA	NA	NA	NA	NA
WP_000776768.1|1625389_1626145_+	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA	NA
WP_088172451.1|1626326_1627409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001307921.1|1627773_1629114_-	long-chain fatty acid transporter FadL	NA	NA	NA	NA	NA
WP_000030901.1|1629485_1629770_+	YfcZ/YiiS family protein	NA	NA	NA	NA	NA
WP_021577760.1|1629950_1631261_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA	NA
WP_021577759.1|1631260_1633405_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA	NA
WP_001195819.1|1633607_1634093_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA	NA
WP_000033336.1|1634736_1635300_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_001362314.1|1635381_1638021_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_000182874.1|1638043_1638793_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA	NA
WP_001252728.1|1638808_1639300_+	fimbrial protein	NA	NA	NA	NA	NA
WP_021577758.1|1639296_1639782_+	fimbrial protein	NA	NA	NA	NA	NA
WP_021577757.1|1639778_1640303_+	fimbrial protein	NA	NA	NA	NA	NA
WP_021577756.1|1640304_1641147_+	DUF2544 domain-containing protein	NA	NA	NA	NA	NA
WP_000730806.1|1641314_1641866_-	endonuclease SmrB	NA	NA	NA	NA	NA
WP_001309606.1|1642031_1642964_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_001307917.1|1642998_1644084_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	47.5	2.7e-89
WP_001043835.1|1644087_1644912_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
WP_000447356.1|1644911_1645721_+	TSUP family transporter	NA	NA	NA	NA	NA
WP_021577755.1|1645720_1646269_+	elongation factor P hydroxylase	NA	NA	NA	NA	NA
WP_000559764.1|1646302_1646581_+	YfcL family protein	NA	NA	NA	NA	NA
WP_021577754.1|1646701_1648708_-|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
WP_000817183.1|1648866_1650087_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
WP_000127774.1|1650361_1651540_+	arabinose transporter	NA	NA	NA	NA	NA
WP_000615822.1|1651536_1652532_-	flagella biosynthesis regulator Flk	NA	NA	NA	NA	NA
WP_021577753.1|1652630_1653767_+	4-phosphoerythronate dehydrogenase PdxB	NA	A0A2R8FDS8	Brazilian_cedratvirus	29.4	2.6e-23
WP_001289167.1|1653832_1654846_+	USG-1 protein	NA	NA	NA	NA	NA
WP_088172450.1|1654845_1655658_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
>prophage 3
NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	5167363	1875184	1884629	5167363		Enterobacteria_phage(85.71%)	10	NA	NA
WP_021577703.1|1875184_1876111_+	glycine betaine ABC transporter ATP binding protein YehX	NA	F2Y1V5	Organic_Lake_phycodnavirus	26.8	2.0e-08
WP_000783120.1|1876115_1876847_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_001216963.1|1876827_1876935_-	protein YohO	NA	NA	NA	NA	NA
WP_001240399.1|1876994_1877726_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.0	2.8e-111
WP_001295431.1|1877947_1879633_+	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_000598641.1|1879629_1880349_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_021577702.1|1880395_1880866_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	99.4	5.2e-82
WP_001295429.1|1880906_1881368_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
WP_021577701.1|1881492_1883496_-	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	98.8	0.0e+00
WP_001292774.1|1883492_1884629_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.1e-162
>prophage 4
NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	5167363	1975532	1983055	5167363		Enterobacteria_phage(42.86%)	7	NA	NA
WP_001116129.1|1975532_1976927_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	30.9	1.1e-18
WP_053882441.1|1977084_1978080_+	SDR family oxidoreductase	NA	A0A1V0QG29	Shearwaterpox_virus	26.3	4.2e-09
WP_000183060.1|1978322_1979216_+	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	42.0	1.0e-46
WP_033870517.1|1979587_1980673_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	3.3e-100
WP_044863830.1|1980672_1981572_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.2	3.3e-29
WP_033870519.1|1981629_1982508_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.5	3.0e-107
WP_033870520.1|1982512_1983055_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	57.9	1.7e-44
>prophage 5
NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	5167363	3366054	3410767	5167363	head,capsid,tail,transposase,lysis,terminase,portal,integrase,protease	Enterobacteria_phage(57.89%)	60	3376095:3376110	3419644:3419659
WP_088172356.1|3366054_3367386_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.1	1.4e-20
WP_088172355.1|3367459_3368044_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	95.4	9.2e-105
WP_088172494.1|3368043_3371445_-	short-chain fatty acid transporter	NA	X2KTY7	Enterobacteria_phage	34.5	1.2e-10
WP_001230352.1|3371509_3372109_-	Ail/Lom family outer membrane beta-barrel protein	NA	A0A0P0ZCF6	Stx2-converting_phage	97.5	1.3e-109
WP_088172354.1|3372179_3375677_-	host specificity protein J	NA	A5LH43	Enterobacteria_phage	97.7	0.0e+00
WP_000090891.1|3375737_3376370_-|tail	tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	99.5	2.2e-96
3376095:3376110	attL	AATCTGGAATACGCCA	NA	NA	NA	NA
WP_032200652.1|3376306_3377050_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	97.2	1.0e-148
WP_001152502.1|3377055_3377754_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	97.8	8.9e-131
WP_000847373.1|3377753_3378083_-|tail	phage tail protein	tail	A0A0K2FIE9	Enterobacteria_phage	99.1	2.1e-58
WP_088172353.1|3378079_3380659_-|tail	phage tail tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	97.3	0.0e+00
WP_088172352.1|3380651_3381086_-|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	99.2	1.5e-64
WP_000479153.1|3381067_3381490_-|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	100.0	6.7e-73
WP_088569077.1|3381505_3382246_-|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	98.0	6.1e-130
WP_000683142.1|3382253_3382649_-|tail	tail protein	tail	A0A2R9YJI2	Escherichia_phage	99.2	2.9e-70
WP_042033450.1|3382645_3383224_-|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	98.4	2.5e-78
WP_000753006.1|3383235_3383589_-|tail	tail attachment protein	tail	A0A2R9YJJ5	Escherichia_phage	98.3	4.4e-62
WP_000158888.1|3383600_3383996_-	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	92.4	2.9e-54
WP_042033446.1|3384037_3385063_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	98.5	4.3e-190
WP_005113102.1|3385118_3385451_-|head	head decoration protein	head	C6ZCY1	Enterobacteria_phage	99.1	1.9e-54
WP_000123307.1|3385460_3386780_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	99.5	6.7e-236
WP_001349919.1|3386760_3388362_-|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	99.6	5.9e-311
WP_000198149.1|3388358_3388565_-|head,tail	Lambda prophage-derived head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
WP_001027268.1|3388561_3390487_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	99.7	0.0e+00
WP_000453600.1|3390461_3391007_-	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.9	1.1e-94
WP_001663509.1|3391395_3391629_+	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	96.3	2.5e-21
WP_000079508.1|3391685_3392096_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	76.3	1.3e-52
WP_001139678.1|3392447_3392600_-	hypothetical protein	NA	K7PKL2	Enterobacteria_phage	96.0	3.1e-20
WP_001228702.1|3392628_3392835_-	hypothetical protein	NA	H6WRZ6	Salmonella_phage	98.5	5.3e-31
WP_001135261.1|3393051_3393549_-	lysozyme	NA	A0A1B5FP97	Escherichia_phage	97.6	4.2e-90
WP_000839582.1|3393548_3393764_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	98.6	1.2e-33
WP_000592546.1|3395033_3395993_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA	NA
WP_000780581.1|3396185_3396710_+	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	54.1	1.1e-48
WP_001204777.1|3396865_3397243_-	antitermination protein	NA	Q777W5	Enterobacteria_phage	84.2	7.3e-55
WP_000971055.1|3397328_3397469_-	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	69.8	1.1e-08
WP_001540841.1|3397465_3397828_-	crossover junction endodeoxyribonuclease RusA	NA	K7PM48	Enterobacteria_phage	95.7	9.5e-60
WP_000950954.1|3397847_3398042_-	protein ninF	NA	NA	NA	NA	NA
WP_000386643.1|3398034_3398376_-	DUF2591 domain-containing protein	NA	Q76H72	Enterobacteria_phage	96.5	1.6e-61
WP_001254223.1|3398378_3398555_-	NinE family protein	NA	K7PHE6	Enterobacteria_phage	98.3	1.4e-27
WP_088172348.1|3398838_3400051_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	98.0	5.1e-166
WP_000185503.1|3400234_3401134_-	replication protein	NA	M1FN81	Enterobacteria_phage	100.0	1.7e-174
WP_032292260.1|3401168_3401450_-	hypothetical protein	NA	K7PMG0	Enterobacteria_phage	97.8	6.3e-43
WP_000391959.1|3401566_3401797_-	hypothetical protein	NA	K7PHA1	Enterobacteria_phage	100.0	1.1e-37
WP_032292259.1|3401905_3402592_+	helix-turn-helix transcriptional regulator	NA	K7PK07	Enterobacteria_phage	99.6	4.4e-130
WP_077760542.1|3403137_3403593_+	antitermination protein	NA	J3JZZ6	Escherichia_phage	97.6	2.3e-63
WP_000281856.1|3403593_3404076_-	superinfection exclusion protein B	NA	A4KWR7	Enterobacteria_phage	100.0	1.1e-87
WP_001542700.1|3404342_3404543_+	restriction inhibitor protein ral	NA	A0A088CQ62	Enterobacteria_phage	98.5	1.2e-32
WP_001542699.1|3404725_3405094_+	DUF2528 family protein	NA	M1FPD2	Enterobacteria_phage	97.5	2.9e-64
WP_001198860.1|3405166_3405331_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	A0A0N6WES3	Escherichia_phage	100.0	1.4e-26
WP_000372923.1|3405299_3405443_+	host cell division inhibitory peptide Kil	NA	A0A0N7C2U2	Escherichia_phage	97.9	2.7e-18
WP_000995439.1|3405518_3405815_+	host-nuclease inhibitor protein Gam	NA	A0A1I9LJN1	Stx_converting_phage	100.0	1.6e-49
WP_000100847.1|3405820_3406606_+	phage recombination protein Bet	NA	A0A1I9LJN0	Stx_converting_phage	100.0	6.3e-149
WP_001537863.1|3406602_3407283_+	YqaJ viral recombinase family protein	NA	A0A0P0ZCQ7	Stx2-converting_phage	99.1	4.6e-132
WP_000682318.1|3407279_3407462_+	DUF1317 domain-containing protein	NA	A0A0N7CHV0	Escherichia_phage	98.3	1.3e-28
WP_000548531.1|3407434_3407626_+	DUF1382 family protein	NA	A0A0P0ZC67	Stx2-converting_phage	100.0	7.3e-27
WP_001386642.1|3407636_3407918_+	cell division protein ZapA	NA	A0A0P0ZE02	Stx2-converting_phage	98.9	5.5e-47
WP_000763367.1|3408016_3408238_+	TraR/DksA family transcriptional regulator	NA	A0A0K2FI84	Escherichia_phage	100.0	2.9e-35
WP_001348592.1|3408448_3409051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000545745.1|3409293_3409461_+	hypothetical protein	NA	A5VWB7	Enterobacteria_phage	98.2	2.9e-27
WP_001303849.1|3409500_3409719_+	excisionase	NA	Q77WA4	Escherichia_phage	100.0	3.7e-35
WP_000533642.1|3409696_3410767_+|integrase	tyrosine-type recombinase/integrase	integrase	Q9MCR4	Enterobacteria_phage	100.0	5.1e-202
3419644:3419659	attR	AATCTGGAATACGCCA	NA	NA	NA	NA
>prophage 6
NZ_CP021844	Escherichia coli strain EC1515 chromosome, complete genome	5167363	3958303	3988321	5167363	integrase,transposase	Pseudomonas_phage(14.29%)	25	3979291:3979305	3990162:3990176
WP_000144688.1|3958303_3959623_+|integrase	site-specific integrase	integrase	A0A2H4J5F8	uncultured_Caudovirales_phage	23.4	1.5e-17
WP_039025884.1|3959715_3960564_-	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
WP_000772024.1|3960660_3960858_-	DUF957 domain-containing protein	NA	NA	NA	NA	NA
WP_039025883.1|3961362_3961740_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA	NA
WP_039025882.1|3961828_3962197_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
WP_088172326.1|3962246_3962801_-	antitoxin of toxin-antitoxin stability system	NA	A0A2I6PI07	Pseudomonas_phage	31.8	5.1e-20
WP_001298859.1|3962981_3964523_+|transposase	IS21-like element ISEc12 family transposase	transposase	K4I413	Acidithiobacillus_phage	46.4	1.7e-129
WP_001016257.1|3964537_3965284_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	31.6	3.5e-24
WP_000692353.1|3965491_3965713_-	DUF987 domain-containing protein	NA	A0A142F0X9	Klebsiella_phage	45.8	1.9e-10
WP_001186774.1|3965775_3966252_-	RadC family protein	NA	NA	NA	NA	NA
WP_001563926.1|3966267_3966753_-	antirestriction protein	NA	A9J566	Pseudomonas_phage	31.7	4.0e-13
WP_001598214.1|3966844_3967663_-	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	37.6	1.5e-44
WP_088172325.1|3968001_3970848_-	autotransporter adhesin Ag43	NA	NA	NA	NA	NA
WP_039025961.1|3971220_3972093_-	GTPase family protein	NA	NA	NA	NA	NA
WP_039025962.1|3972356_3973913_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	42.7	1.4e-104
WP_001682441.1|3974946_3975738_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA	NA
WP_001456218.1|3975826_3976669_-	alpha/beta fold putative hydrolase EstX	NA	W8EKH7	Mycobacterium_phage	26.1	3.0e-08
WP_072042932.1|3976869_3977103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001120888.1|3977133_3978627_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000027057.1|3978836_3979697_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
3979291:3979305	attL	AGTAAGTTGGCAGCA	NA	NA	NA	NA
WP_001067855.1|3980119_3980824_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_011058339.1|3982019_3982106_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691727.1|3982121_3984041_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	100.0	0.0e+00
WP_001067858.1|3986053_3986758_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_000845054.1|3987307_3988321_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	6.1e-72
3990162:3990176	attR	AGTAAGTTGGCAGCA	NA	NA	NA	NA
>prophage 1
NZ_CP021845	Escherichia coli strain EC1515 plasmid pEC1515-1, complete sequence	125099	29563	80752	125099	integrase,transposase	Escherichia_phage(25.0%)	58	38696:38712	78573:78589
WP_000608644.1|29563_30826_+|transposase	IS1380-like element ISEc9 family transposase	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
WP_015056382.1|31149_32295_+	class C beta-lactamase CMY-4	NA	NA	NA	NA	NA
WP_001221666.1|32388_32922_+	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	54.1	6.1e-47
WP_000118520.1|32918_33236_-	quaternary ammonium compound-resistance protein SugE	NA	NA	NA	NA	NA
WP_011264049.1|34520_35729_+	IncI1-type conjugal transfer protein TrbA	NA	NA	NA	NA	NA
WP_011264050.1|35747_36818_+	IncI1-type conjugal transfer protein TrbB	NA	NA	NA	NA	NA
38696:38712	attL	TCATTGGCGTCCTGACT	NA	NA	NA	NA
WP_000422741.1|38901_39327_+	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	99.0	1.5e-48
WP_000624722.1|39323_39674_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	66.4	4.7e-40
WP_000080193.1|39704_41318_+|transposase	IS66-like element ISEc23 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	63.6	2.3e-182
WP_088172500.1|41351_41642_+	conjugal transfer protein TrbC	NA	NA	NA	NA	NA
WP_011264053.1|41679_44379_-	IncI1-type relaxase NikB	NA	NA	NA	NA	NA
WP_001283947.1|44389_44722_-	IncI1-type relaxosome accessory protein NikA	NA	NA	NA	NA	NA
WP_021529212.1|44955_45291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001599394.1|45377_46226_-	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
WP_000148285.1|46805_47057_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000150314.1|47087_47294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011264057.1|47355_48258_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	53.8	9.0e-67
WP_000833767.1|48254_48644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000804663.1|48820_49087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000218858.1|49180_49615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000117611.1|50343_50844_-	antirestriction protein ArdA	NA	G9FHQ1	Rhodococcus_virus	27.3	2.4e-05
WP_001579745.1|51443_51902_-	hypothetical protein	NA	A0A0N7KZV3	Escherichia_phage	56.6	9.0e-15
WP_001276270.1|51898_52618_-	plasmid SOS inhibition protein A	NA	NA	NA	NA	NA
WP_001387500.1|52614_53049_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA	NA
WP_001145485.1|53103_55062_-	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	29.4	7.3e-21
WP_000006020.1|55120_55354_-	DUF905 domain-containing protein	NA	A0A096XUX0	Cronobacter_phage	53.2	1.7e-06
WP_001276107.1|55411_55939_-	single-stranded DNA-binding protein	NA	I3PGW4	Xanthomonas_phage	73.5	3.5e-47
WP_001434357.1|56322_56637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001027495.1|56707_56899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000271744.1|56895_57318_-	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
WP_077249901.1|57364_57667_-	antirestriction protein	NA	NA	NA	NA	NA
WP_000274500.1|59023_59458_-	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
WP_001104881.1|59471_59693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000086147.1|59693_60377_-	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.1e-29
WP_072748701.1|60761_61664_-	DUF1281 domain-containing protein	NA	NA	NA	NA	NA
WP_000618110.1|62081_62330_+	protein ImpC	NA	Q2A098	Sodalis_phage	48.0	1.9e-14
WP_000109071.1|62326_62764_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	48.4	8.3e-26
WP_000457523.1|62763_64035_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	60.5	1.9e-142
WP_000340829.1|64039_64432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001103690.1|64436_65408_-	hypothetical protein	NA	A0A222YXF2	Escherichia_phage	42.9	7.4e-67
WP_000633913.1|65636_66281_+	AAA family ATPase	NA	A0A222YXS3	Escherichia_phage	43.0	1.9e-39
WP_000239529.1|66274_66550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001372173.1|66687_67470_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	92.0	5.4e-52
WP_000715519.1|67537_68146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088172499.1|68215_68566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000139427.1|69136_69718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000628093.1|69897_70233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000074712.1|70220_70868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000642771.1|71038_71323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000545983.1|71342_72476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157698278.1|72937_73333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001067858.1|73366_74071_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_072257968.1|74162_74858_+	aminoglycoside 3-N-acetyltransferase	NA	NA	NA	NA	NA
WP_000587837.1|74870_75413_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_000951934.1|75894_76086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001330846.1|76091_76337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000080860.1|76387_77524_+	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
WP_001067858.1|80047_80752_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
78573:78589	attR	AGTCAGGACGCCAATGA	NA	NA	NA	NA
>prophage 1
NZ_CP021846	Escherichia coli strain EC1515 plasmid pEC1515-2, complete sequence	92350	0	78041	92350	transposase,integrase	Escherichia_phage(52.63%)	53	16193:16252	41450:43238
WP_001351995.1|157_799_+	hypothetical protein	NA	A0A077SK30	Escherichia_phage	95.8	2.3e-109
WP_071447930.1|901_2029_+	RelA/SpoT domain-containing protein	NA	A0A1B0VBT5	Salmonella_phage	74.4	2.0e-156
WP_000747845.1|2065_2314_-	hypothetical protein	NA	Q71TG0	Escherichia_phage	98.8	4.0e-41
WP_000224043.1|2310_2751_-	hypothetical protein	NA	A0A077SLF0	Escherichia_phage	100.0	1.7e-79
WP_085947771.1|2870_4032_+|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
WP_072778934.1|6975_10491_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	A0A2L1IV18	Escherichia_phage	36.1	2.0e-98
WP_000896262.1|10860_11061_+	DUF839 domain-containing protein	NA	NA	NA	NA	NA
WP_000222771.1|11350_11638_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	50.5	4.5e-20
WP_001139206.1|11634_11886_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_076751473.1|12498_15357_+	helicase	NA	Q1MVN7	Enterobacteria_phage	98.4	0.0e+00
16193:16252	attL	ATAGGGGAGCCCGCAGAATTCGGAAAAAATCGTACGCTAAGGTTTTCCGGGCATCCGTAA	NA	NA	NA	NA
WP_001067858.1|18144_18849_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_001067858.1|18960_19665_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_000679427.1|19900_20248_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_001206356.1|20411_21203_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
WP_001336345.1|21208_21499_-	DUF1010 domain-containing protein	NA	NA	NA	NA	NA
WP_001083725.1|21610_22108_-	trimethoprim-resistant dihydrofolate reductase DfrA12	NA	A0A0A0PL85	Bacillus_phage	40.9	7.5e-23
WP_000845048.1|22255_23269_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_001067855.1|23736_24441_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000133024.1|24583_25306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000071636.1|25302_25788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001352021.1|26812_27343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543166.1|29506_29956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001352025.1|30500_32009_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.7	8.1e-44
WP_001254943.1|33171_34323_+|transposase	IS30-like element IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.6	7.5e-42
WP_001067855.1|36284_36989_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001067858.1|37100_37805_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_000058717.1|38297_39182_+	EamA family transporter	NA	NA	NA	NA	NA
WP_000804064.1|39213_40413_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
WP_072109431.1|40491_41154_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA	NA
WP_000844627.1|41185_41428_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001138014.1|41485_44452_-|transposase	Tn3-like element TnAs1 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	100.0	0.0e+00
41450:43238	attR	ATAGGGGAGCCCGCAGAATTCGGAAAAAATCGTACGCTAAGGTTTTCCGGGCATCCGTAAGGGCCGAAACTTCCCGTCTTCCAGTCTGCGGCTCTGCCGCCAGACGTAATCGCCGGTTAGGTTGATGTGCTCCCAGCCCAGCGGCGACAGGAATTGCAGCAGCTCGCCGTCCACCGGCTTGCCGGCCTCGACCAACCCCTGGGTGGCGCGTTCCAGGTACACCGTGTTCCACAGCACGATAGCCGCCGTCACCAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAGCGAGGCGGTGACGGTGCCCTGCTTGATCGAGCTGGCCAGGCGCAGGATGTCGTCCCAGTGGGCACGCACGTGCTTGATGTTCAGGGTGCCGCCGATCAGCGGGCGCAACGTCGGGTAGGCTTGCACGCCCTGCGGCACGTACAGCTTGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCAGGTGCATCAGGGCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTCGGACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGCGGACGCCGACATTCACCACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGGGTATAGAACAGCCGTCCCGGCTCGCTACCGTACTTCGGGTTGACGTGCCCGGTGCTCTCGCCCCGGCCACCCGCGCGGAAGCGCTGGCCATCGGAGGATGAGGTCGTGCCGTCGCCCCAGTGGGCGGCAAAGGCGTGGCGATACTGGTGGTTGACCAGCTCGGCCAAGGCCGCCGAATAGGTTTCGTCGCGGATGTGCCAGGCTTGCAGCCAGGACAGCTTGGCGTAGGTCAGGCCGGGGCTCGACTCGGCCATCTTGGTCAGCCCGAGGTTGATCGCATCACCGAGGATTGCGGACAGCAGCAACGTCCTGTCTTTGGCCTCGGCCCCGTCCTTCAAGTGGGTGAAGTGGCGGCTGAAGCCCGTCCAGTCGTCCACGTCCATCAGCAGTTCGGTGATCTTGATGCGCGGCAGTAACTGGCTGGTTTGGTCGATCAGCGCCTGCGCCCGATCCGGCACCGCCGCATCCAGCGGGGTGATTTTCAGCCCTGACTCGGTGAGGATGGCATCGGGCAGCTCGTTGTCCTTGGCCAGGCGGGTGACGGTGGCCAACTGCTCGTCCAGCAGCTGCAAACGCTCTTCCAGGTACTGGTCGCTGTTCGGGTTGATCGCCAGGGGCAGGGCCTGCTCGCGCTTGAGTGCGGCGAACTTCTCGGCCGGCAGCAGGTAGTCGTCGAAGTCGCGGAACTGCCGCGAGCCCTTGACCCAGATGTCGCCGGAGCGCAGGGCGTTCTTCAGCTCGGACAGGGCGCAGATTTCGTAGAATTTCCGGTCGAGGCCTTCCGGGGTGATCACCAGCGGCTTCCAGCGCGGCTTGATGAAGGCCGTGGGTGCATCGGCCGGCACCTTGCGCAGGTTGTCGGCGTTCATCTCACGCAGGGTCTGCACGGCTGCCAGCACGCCTTGCGCGGCCGGC	NA	NA	NA	NA
WP_001067858.1|44525_45230_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_032187889.1|45314_45620_-|transposase	IS3 family transposase	transposase	U5P4I9	Shigella_phage	88.4	4.9e-25
WP_088172348.1|45686_46900_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	98.0	5.1e-166
WP_001352007.1|47363_47519_+	type I toxin-antitoxin system toxin HokD	NA	A0A1I9LJU7	Stx_converting_phage	90.2	4.0e-15
WP_000509940.1|48983_49493_-	hypothetical protein	NA	Q1MVJ9	Enterobacteria_phage	99.4	6.6e-91
WP_000035250.1|49504_50086_-	hypothetical protein	NA	Q71TM4	Escherichia_phage	96.9	1.8e-100
WP_072779020.1|50121_50937_-	hypothetical protein	NA	A0A1B0V835	Salmonella_phage	94.5	1.1e-108
WP_000459149.1|50946_52218_-	hypothetical protein	NA	A0A1B0V7E4	Salmonella_phage	97.9	3.0e-241
WP_088177441.1|52242_53516_-|transposase	IS3 family transposase	transposase	Q9ZXG3	Shigella_phage	95.7	2.8e-170
WP_000067707.1|53931_55638_-	hypothetical protein	NA	Q71TM1	Escherichia_phage	99.8	0.0e+00
WP_000038866.1|55863_56865_-	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	100.0	1.7e-178
WP_001285362.1|56881_58078_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	100.0	1.6e-225
WP_001154682.1|58246_59056_-	GIY-YIG nuclease family protein	NA	A0A077SK46	Escherichia_phage	97.8	1.6e-155
WP_001113742.1|59348_60233_-	RepB family plasmid replication initiator protein	NA	A0A077SLP3	Escherichia_phage	100.0	2.1e-161
WP_001281115.1|60568_60961_-	hypothetical protein	NA	A0A077SLJ1	Escherichia_phage	97.7	7.6e-71
WP_000336812.1|60970_61111_-	hypothetical protein	NA	Q71TL6	Escherichia_phage	100.0	6.3e-20
WP_000007763.1|61136_61559_-	hypothetical protein	NA	Q71TL5	Escherichia_phage	97.1	9.4e-59
WP_000890209.1|61598_62387_-	hypothetical protein	NA	A0A1B0V830	Salmonella_phage	95.8	7.8e-115
WP_085948178.1|66170_67383_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	99.7	1.7e-169
WP_076751476.1|68184_71658_+	cellulose biosynthesis protein BcsC	NA	NA	NA	NA	NA
WP_000578338.1|72665_73400_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000124023.1|75053_78041_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	53.5	1.7e-295
>prophage 2
NZ_CP021846	Escherichia coli strain EC1515 plasmid pEC1515-2, complete sequence	92350	82168	91516	92350	integrase	Escherichia_phage(75.0%)	12	88802:88815	90363:90376
WP_069067570.1|82168_83431_+	hypothetical protein	NA	Q1MVG4	Enterobacteria_phage	99.0	3.9e-233
WP_001190711.1|84808_85030_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	A0A222YXU1	Escherichia_phage	98.6	3.3e-31
WP_001216039.1|85029_85410_+	type II toxin-antitoxin system death-on-curing family toxin	NA	Q71T66	Escherichia_phage	99.2	9.7e-63
WP_000113018.1|85414_85594_+	hypothetical protein	NA	Q71TH5	Escherichia_phage	98.3	1.2e-23
WP_069067567.1|85621_86665_+	DUF968 domain-containing protein	NA	A0A077SLM1	Escherichia_phage	98.6	1.5e-203
WP_001351993.1|86967_87279_+	phage antirepressor Ant	NA	A0A077SLR9	Escherichia_phage	98.0	2.9e-49
WP_000611661.1|87311_88163_-	hypothetical protein	NA	A0A077SLM8	Escherichia_phage	99.3	1.0e-157
WP_000874156.1|88273_88483_-	hypothetical protein	NA	A0A077SK26	Escherichia_phage	100.0	1.8e-31
88802:88815	attL	TTTATTGCTCTAAT	NA	NA	NA	NA
WP_000542338.1|89087_89309_+	hypothetical protein	NA	Q5QBN7	Enterobacteria_phage	97.3	4.2e-34
WP_000067537.1|89316_90348_+|integrase	site-specific integrase	integrase	A0A077SLE7	Escherichia_phage	99.1	1.9e-193
WP_001224232.1|90398_90710_+	hypothetical protein	NA	A0A077SK03	Escherichia_phage	97.1	8.8e-46
90363:90376	attR	TTTATTGCTCTAAT	NA	NA	NA	NA
WP_000848370.1|90955_91516_+	Ref family protein	NA	Q5QBN4	Enterobacteria_phage	95.7	2.8e-95
>prophage 1
NZ_CP021847	Escherichia coli strain EC1515 plasmid pEC1515-3, complete sequence	84091	7822	18566	84091	integrase,transposase	Enterobacteria_phage(33.33%)	12	11335:11394	14935:15591
WP_000027057.1|7822_8683_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
WP_001235713.1|10418_10976_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	100.0	7.0e-94
WP_020219413.1|11139_11280_+	hypothetical protein	NA	Q1MVP5	Enterobacteria_phage	93.8	1.3e-09
11335:11394	attL	GGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTG	NA	NA	NA	NA
WP_001067858.1|11397_12102_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_015057121.1|11992_12952_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	40.5	1.7e-47
WP_032491824.1|13100_13892_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA22	NA	NA	NA	NA	NA
WP_000939727.1|14023_14845_+	lincosamide nucleotidyltransferase Lnu(F)	NA	NA	NA	NA	NA
WP_001067858.1|14997_15702_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
14935:15591	attR	GGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTGCACATGAACCCATTCAAAGGCCGGCATTTTCAGCGTGACATCATTCTGTGGGCCGTACGCTGGTACTGCAAATACGGCATCAGTTACCGTGAGCTGCAGGAGATGCTGGCTGAACGCGGAGTGAATGTCGATCACTCCACGATTTACCGCTGGGTTCAGCGTTATGCGCCTGAAATGGAAAAACGGCTGCGCTGGTACTGGCGTAACCCTTCCGATCTTTGCCCGTGGCACATGGATGAAACCTACGTGAAGGTCAATGGCCGCTGGGCGTATCTGTACCGGGCCGTCGACAGCCGGGGCCGCACTGTCGATTTTTATCTCTCCTCCCGTCGTAACAGCAAAGCTGCATACCGGTTTCTGGGTAAAATCCTCAACAACGTGAAGAAGTGGCAGATCCCACGATTCATCAACACGGATAAAGCGCCCGCCTATGGTCGCGCGCTTGCTCTGCTCAAACGCGAAGGCCGGTGCCCGTCTGACGTTGAACACCGACAGATTAAGTACCGGAACAACGTGATTGAATGCGATCATGGCAAACTGAAACGGATAATCAACGCCACGCTGGGATTTAAATCCATGAAGACGGCTTACGCCACC	NA	NA	NA	NA
WP_011264039.1|15774_16014_+	macrolide transporter	NA	A0A2K5B2B5	Erysipelothrix_phage	46.2	9.5e-08
WP_000612791.1|16159_17023_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	31.0	2.5e-05
WP_001354008.1|17060_17306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000034420.1|17774_18566_+	sulfonamide-resistant dihydropteroate synthase Sul3	NA	A0A0B5J4J5	Pandoravirus	26.5	1.2e-14
