assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002192435.1_ASM219243v1	NZ_CP021790	Limosilactobacillus fermentum strain LAC FRN-92 chromosome, complete genome	1	6930-7017	1	CRISPRCasFinder	no	DEDDh	DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	Unclear	TCACGCCCTAAGCACACGGACACCGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	NA|195aa|up_1|NZ_CP021790.1_4960_5545_-,NA|77aa|down_8|NZ_CP021790.1_19702_19933_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|124aa|up_4|NZ_CP021790.1_639_1011_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|909aa|up_3|NZ_CP021790.1_1080_3807_-	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|373aa|up_2|NZ_CP021790.1_3796_4915_-	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain	NA|195aa|up_1|NZ_CP021790.1_4960_5545_-	NA	NA|258aa|up_0|NZ_CP021790.1_5493_6267_-	COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]	NA|197aa|down_0|NZ_CP021790.1_9026_9617_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|216aa|down_1|NZ_CP021790.1_9730_10378_+	cd19364, TenA_C_BsTenA-like, TenA_C proteins similar to Bacillus subtilis TenA	NA|313aa|down_2|NZ_CP021790.1_10498_11437_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|326aa|down_3|NZ_CP021790.1_11454_12432_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|290aa|down_4|NZ_CP021790.1_12453_13323_-	PRK05416, PRK05416, RNase adapter RapZ	DEDDh|362aa|down_5|NZ_CP021790.1_13541_14627_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|954aa|down_6|NZ_CP021790.1_14716_17578_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|672aa|down_7|NZ_CP021790.1_17587_19603_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|77aa|down_8|NZ_CP021790.1_19702_19933_-	NA	NA|212aa|down_9|NZ_CP021790.1_19938_20574_-	pfam12917, HD_2, HD containing hydrolase-like enzyme
GCF_002192435.1_ASM219243v1	NZ_CP021790	Limosilactobacillus fermentum strain LAC FRN-92 chromosome, complete genome	2	457688-461195	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	Type I-E	GTGCTCCCCATGTATATGGGGGTGATCC,GTGCTCCCCATGTATATGGGGGTGATCC,GTGCTCCCCATGTATATGGGGGTGATCC	28,28,28	0	0	NA	NA	NA:NA:NA	54,57,56	57	TypeI-E	DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	NA,NA|55aa|down_0|NZ_CP021790.1_461479_461644_+,NA|66aa|down_1|NZ_CP021790.1_462911_463109_+,NA|110aa|down_7|NZ_CP021790.1_467334_467664_-	NA|476aa|up_9|NZ_CP021790.1_446243_447671_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|120aa|up_8|NZ_CP021790.1_447791_448151_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	cas3|914aa|up_7|NZ_CP021790.1_448381_451123_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|555aa|up_6|NZ_CP021790.1_451103_452768_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|195aa|up_5|NZ_CP021790.1_452784_453369_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|367aa|up_4|NZ_CP021790.1_453377_454478_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|236aa|up_3|NZ_CP021790.1_454458_455166_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|219aa|up_2|NZ_CP021790.1_455178_455835_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|313aa|up_1|NZ_CP021790.1_455831_456770_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|295aa|up_0|NZ_CP021790.1_456773_457658_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|55aa|down_0|NZ_CP021790.1_461479_461644_+	NA	NA|66aa|down_1|NZ_CP021790.1_462911_463109_+	NA	NA|161aa|down_2|NZ_CP021790.1_463269_463752_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|234aa|down_3|NZ_CP021790.1_463769_464471_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|283aa|down_4|NZ_CP021790.1_464503_465352_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|259aa|down_5|NZ_CP021790.1_465491_466268_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|238aa|down_6|NZ_CP021790.1_466369_467083_-	cd17299, acetolactate_decarboxylase, alpha-acetolactate decarboxylase	NA|110aa|down_7|NZ_CP021790.1_467334_467664_-	NA	NA|217aa|down_8|NZ_CP021790.1_468043_468694_+	pfam15782, GREB1, Gene regulated by oestrogen in breast cancer	NA|154aa|down_9|NZ_CP021790.1_468852_469314_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_002192435.1_ASM219243v1	NZ_CP021790	Limosilactobacillus fermentum strain LAC FRN-92 chromosome, complete genome	3	1660773-1661270	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	Orphan	GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	36,36,36	0	0	NA	NA	NA:NA:NA	6,7,7	7	Orphan	DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	NA,NA|98aa|down_4|NZ_CP021790.1_1665360_1665654_+,NA|114aa|down_7|NZ_CP021790.1_1667480_1667822_+	NA|255aa|up_9|NZ_CP021790.1_1649382_1650147_+	PRK07475, PRK07475, hypothetical protein; Provisional	NA|117aa|up_8|NZ_CP021790.1_1651973_1652324_-	pfam06115, DUF956, Domain of unknown function (DUF956)	NA|307aa|up_7|NZ_CP021790.1_1652324_1653245_-	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|268aa|up_6|NZ_CP021790.1_1653273_1654077_-	PRK15065, PRK15065, mannose/fructose/sorbose family PTS transporter subunit IIC	NA|328aa|up_5|NZ_CP021790.1_1654096_1655080_-	PRK15088, PRK15088, PTS system mannose-specific transporter subunits IIAB; Provisional	NA|314aa|up_4|NZ_CP021790.1_1655554_1656496_+	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|172aa|up_3|NZ_CP021790.1_1656729_1657245_-	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|280aa|up_2|NZ_CP021790.1_1657407_1658247_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|321aa|up_1|NZ_CP021790.1_1658333_1659296_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|302aa|up_0|NZ_CP021790.1_1659392_1660298_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|144aa|down_0|NZ_CP021790.1_1661538_1661970_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|131aa|down_1|NZ_CP021790.1_1661985_1662378_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|77aa|down_2|NZ_CP021790.1_1662502_1662733_-	COG2336, MazE, Growth regulator [Signal transduction mechanisms]	NA|318aa|down_3|NZ_CP021790.1_1663814_1664768_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|98aa|down_4|NZ_CP021790.1_1665360_1665654_+	NA	NA|321aa|down_5|NZ_CP021790.1_1665709_1666672_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|250aa|down_6|NZ_CP021790.1_1666671_1667421_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|114aa|down_7|NZ_CP021790.1_1667480_1667822_+	NA	NA|745aa|down_8|NZ_CP021790.1_1667837_1670072_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|146aa|down_9|NZ_CP021790.1_1670081_1670519_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional
GCF_002192435.1_ASM219243v1	NZ_CP021790	Limosilactobacillus fermentum strain LAC FRN-92 chromosome, complete genome	4	1890278-1890577	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	csn2	DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	Type II-A	GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	36,36,36	0	0	NA	NA	NA:NA:NA	4,4,4	4	TypeII-A	DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	NA,NA	NA|230aa|up_9|NZ_CP021790.1_1881067_1881757_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|288aa|up_8|NZ_CP021790.1_1881970_1882834_+	cd01003, PBP2_YckB, Substrate binding domain of an ABC cystine transporter; the type 2 periplasmic binding protein fold	NA|201aa|up_7|NZ_CP021790.1_1883057_1883660_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|134aa|up_6|NZ_CP021790.1_1883815_1884217_-	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI	NA|145aa|up_5|NZ_CP021790.1_1884229_1884664_+	pfam17255, DUF5322, Family of unknown function (DUF5322)	NA|146aa|up_4|NZ_CP021790.1_1884663_1885101_+	PRK14797, PRK14797, lipoprotein signal peptidase; Provisional	NA|292aa|up_3|NZ_CP021790.1_1885141_1886017_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|361aa|up_2|NZ_CP021790.1_1886046_1887129_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|342aa|up_1|NZ_CP021790.1_1888373_1889399_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	csn2|224aa|up_0|NZ_CP021790.1_1889577_1890249_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|32aa|down_0|NZ_CP021790.1_1893469_1893565_-	pfam08861, DUF1828, Domain of unknown function DUF1828	NA|169aa|down_1|NZ_CP021790.1_1893678_1894185_-	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|230aa|down_2|NZ_CP021790.1_1894381_1895071_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|381aa|down_3|NZ_CP021790.1_1895268_1896411_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|432aa|down_4|NZ_CP021790.1_1896410_1897706_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|136aa|down_5|NZ_CP021790.1_1898922_1899330_+	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD)	NA|151aa|down_6|NZ_CP021790.1_1899441_1899894_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|347aa|down_7|NZ_CP021790.1_1900925_1901966_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|756aa|down_8|NZ_CP021790.1_1901968_1904236_-	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|420aa|down_9|NZ_CP021790.1_1904389_1905649_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily
GCF_002192435.1_ASM219243v1	NZ_CP021790	Limosilactobacillus fermentum strain LAC FRN-92 chromosome, complete genome	5	1941524-1941644	5	CRISPRCasFinder	no	cas14j,cas1	DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	Unclear	GATCCTCCAATTTACTTCCTTAATTATACTAAATCAGAGTCTCTA	45	0	0	NA	NA	NA	1	1	TypeV	DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	NA|47aa|up_8|NZ_CP021790.1_1929588_1929729_+,NA|143aa|up_4|NZ_CP021790.1_1937546_1937975_-,NA|322aa|up_3|NZ_CP021790.1_1937984_1938950_-,NA|52aa|down_6|NZ_CP021790.1_1949702_1949858_+	NA|84aa|up_9|NZ_CP021790.1_1929325_1929577_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|47aa|up_8|NZ_CP021790.1_1929588_1929729_+	NA	NA|159aa|up_7|NZ_CP021790.1_1931344_1931821_+	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase	NA|93aa|up_6|NZ_CP021790.1_1931865_1932144_-	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|317aa|up_5|NZ_CP021790.1_1935002_1935953_+	pfam14253, AbiH, Bacteriophage abortive infection AbiH	NA|143aa|up_4|NZ_CP021790.1_1937546_1937975_-	NA	NA|322aa|up_3|NZ_CP021790.1_1937984_1938950_-	NA	cas14j|222aa|up_2|NZ_CP021790.1_1939291_1939957_-	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|293aa|up_1|NZ_CP021790.1_1940328_1941207_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|96aa|up_0|NZ_CP021790.1_1941230_1941518_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|316aa|down_0|NZ_CP021790.1_1943335_1944283_-	smart00974, T5orf172, This entry represents the putative helicase A859L	NA|130aa|down_1|NZ_CP021790.1_1944768_1945158_-	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|107aa|down_2|NZ_CP021790.1_1945167_1945488_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|193aa|down_3|NZ_CP021790.1_1947151_1947730_+	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|230aa|down_4|NZ_CP021790.1_1947722_1948412_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|152aa|down_5|NZ_CP021790.1_1948462_1948918_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|52aa|down_6|NZ_CP021790.1_1949702_1949858_+	NA	cas1|302aa|down_7|NZ_CP021790.1_1951182_1952088_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|151aa|down_8|NZ_CP021790.1_1953303_1953756_-	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|417aa|down_9|NZ_CP021790.1_1953834_1955085_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002192435.1_ASM219243v1	NZ_CP021790	Limosilactobacillus fermentum strain LAC FRN-92 chromosome, complete genome	6	2060359-2061384	6,4,4	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	Orphan	GTACTCGGAACTACTGATCTGACACTCATCCAAGAC,GTACTCGGAACTACTGATCTGACACTCATCCAAGAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	36,36,36	1	1	2060725-2060754	NZ_CP021790.1_1660772-1660743	NA:NA:NA	15,15,12	15	Orphan	DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DinG,cas14j,csa3,cas9,csn2	NA,NA	NA|133aa|up_9|NZ_CP021790.1_2034781_2035180_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|151aa|up_8|NZ_CP021790.1_2035644_2036097_-	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|417aa|up_7|NZ_CP021790.1_2036175_2037426_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|151aa|up_6|NZ_CP021790.1_2047479_2047932_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|48aa|up_5|NZ_CP021790.1_2048359_2048503_-	pfam02844, GARS_N, Phosphoribosylglycinamide synthetase, N domain	NA|151aa|up_4|NZ_CP021790.1_2048632_2049085_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|233aa|up_3|NZ_CP021790.1_2053067_2053766_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|306aa|up_2|NZ_CP021790.1_2053702_2054620_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|327aa|up_1|NZ_CP021790.1_2054819_2055800_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|308aa|up_0|NZ_CP021790.1_2059183_2060107_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|152aa|down_0|NZ_CP021790.1_2062811_2063267_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
