assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002180315.1_ASM218031v1	NZ_CP021708	Klebsiella pneumoniae strain AR_0143, complete genome	1	1110413-1110991	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	RT,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,TnsE_C	Type I-E	GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTCT,GTCTTCCCCACACGCGTGGGGGTGTTTC	28,29,28	8	8	1110441-1110473|1110624-1110656|1110442-1110473|1110625-1110656|1110870-1110901|1110931-1110962|1110869-1110901|1110930-1110962	NZ_CP021708.1_781126-781158|NZ_CP021708.1_782237-782205|NZ_CP021708.1_781127-781158|NZ_CP021708.1_782236-782205|NZ_CP021710.1_24730-24761|NZ_CP021708.1_745892-745923|NZ_CP021710.1_24729-24761|NZ_CP021708.1_745891-745923	I-E,II-B:I-E,II-B:I-E,II-B	6,9,9	9	TypeI-E	RT,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,TnsE_C	NA,NA|372aa|down_8|NZ_CP021708.1_1120747_1121863_+	NA|131aa|up_9|NZ_CP021708.1_1096914_1097307_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|up_8|NZ_CP021708.1_1097343_1098576_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_7|NZ_CP021708.1_1099141_1099576_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_6|NZ_CP021708.1_1099691_1100891_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|386aa|up_5|NZ_CP021708.1_1101186_1102344_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_4|NZ_CP021708.1_1102386_1104537_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_3|NZ_CP021708.1_1104783_1105863_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|363aa|up_2|NZ_CP021708.1_1106165_1107254_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NZ_CP021708.1_1107327_1109097_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP021708.1_1109089_1110160_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NZ_CP021708.1_1111402_1114018_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NZ_CP021708.1_1114021_1115545_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NZ_CP021708.1_1115556_1116123_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NZ_CP021708.1_1116115_1116763_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_4|NZ_CP021708.1_1116792_1117827_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|down_5|NZ_CP021708.1_1117839_1118556_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_6|NZ_CP021708.1_1118555_1119431_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_7|NZ_CP021708.1_1119408_1119696_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_8|NZ_CP021708.1_1120747_1121863_+	NA	NA|228aa|down_9|NZ_CP021708.1_1121873_1122557_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)
GCF_002180315.1_ASM218031v1	NZ_CP021708	Klebsiella pneumoniae strain AR_0143, complete genome	2	1119744-1120511	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	RT,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,TnsE_C	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC	28,28,28	1	1	1120382-1120414	NZ_CP021710.1_167693-167661	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	11,12,12	12	TypeI-E	RT,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,TnsE_C	NA,NA|372aa|down_0|NZ_CP021708.1_1120747_1121863_+	NA|590aa|up_9|NZ_CP021708.1_1107327_1109097_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NZ_CP021708.1_1109089_1110160_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_7|NZ_CP021708.1_1111402_1114018_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_CP021708.1_1114021_1115545_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|NZ_CP021708.1_1115556_1116123_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|NZ_CP021708.1_1116115_1116763_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|NZ_CP021708.1_1116792_1117827_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|239aa|up_2|NZ_CP021708.1_1117839_1118556_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|NZ_CP021708.1_1118555_1119431_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_CP021708.1_1119408_1119696_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NZ_CP021708.1_1120747_1121863_+	NA	NA|228aa|down_1|NZ_CP021708.1_1121873_1122557_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|NZ_CP021708.1_1122617_1122989_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|251aa|down_3|NZ_CP021708.1_1123493_1124246_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|NZ_CP021708.1_1124248_1126033_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|446aa|down_5|NZ_CP021708.1_1126046_1127384_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|NZ_CP021708.1_1127467_1128091_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|NZ_CP021708.1_1128087_1128747_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|NZ_CP021708.1_1128796_1129534_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|NZ_CP021708.1_1129530_1129761_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_002180315.1_ASM218031v1	NZ_CP021708	Klebsiella pneumoniae strain AR_0143, complete genome	3	3095127-3095255	3	CRISPRCasFinder	no	DEDDh	RT,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,TnsE_C	Unclear	TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	39	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,TnsE_C	NA,NA	NA|428aa|up_9|NZ_CP021708.1_3084875_3086159_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|NZ_CP021708.1_3086294_3087695_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|NZ_CP021708.1_3087740_3088433_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|NZ_CP021708.1_3088518_3088917_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_CP021708.1_3088974_3090219_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_CP021708.1_3090324_3090783_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_CP021708.1_3091040_3092498_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NZ_CP021708.1_3092540_3092993_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_CP021708.1_3092995_3094051_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_CP021708.1_3094210_3095071_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_CP021708.1_3095293_3095509_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_CP021708.1_3095511_3096735_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_CP021708.1_3096747_3097344_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_CP021708.1_3097350_3097989_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_CP021708.1_3097981_3098776_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_CP021708.1_3098768_3100007_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_CP021708.1_3100010_3101354_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_CP021708.1_3101765_3102506_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_CP021708.1_3102476_3103244_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_CP021708.1_3103318_3103900_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
GCF_002180315.1_ASM218031v1	NZ_CP021708	Klebsiella pneumoniae strain AR_0143, complete genome	4	4132016-4132154	3	PILER-CR	no	TnsE_C	RT,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,TnsE_C	Orphan	CCCAGTTCCCAACTATTTTGTC	22	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,DEDDh,DinG,cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,TnsE_C	NA|126aa|up_8|NZ_CP021708.1_4125839_4126217_-,NA|124aa|up_7|NZ_CP021708.1_4126626_4126998_-,NA|166aa|up_6|NZ_CP021708.1_4127058_4127556_-,NA	TnsE_C|539aa|up_9|NZ_CP021708.1_4123992_4125609_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|126aa|up_8|NZ_CP021708.1_4125839_4126217_-	NA	NA|124aa|up_7|NZ_CP021708.1_4126626_4126998_-	NA	NA|166aa|up_6|NZ_CP021708.1_4127058_4127556_-	NA	NA|175aa|up_5|NZ_CP021708.1_4127624_4128149_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|158aa|up_4|NZ_CP021708.1_4128243_4128717_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|327aa|up_3|NZ_CP021708.1_4129345_4130326_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|134aa|up_2|NZ_CP021708.1_4130383_4130785_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP021708.1_4130899_4131226_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP021708.1_4131413_4131653_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|347aa|down_0|NZ_CP021708.1_4132478_4133519_+	PRK10918, PRK10918, phosphate ABC transporter substrate-binding protein PstS	NA|320aa|down_1|NZ_CP021708.1_4133647_4134607_+	PRK11275, pstC, phosphate ABC transporter permease PstC	NA|297aa|down_2|NZ_CP021708.1_4134606_4135497_+	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|258aa|down_3|NZ_CP021708.1_4135544_4136318_+	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB	NA|242aa|down_4|NZ_CP021708.1_4136368_4137094_+	PRK11115, PRK11115, phosphate signaling complex protein PhoU	NA|545aa|down_5|NZ_CP021708.1_4137571_4139206_+	COG4580, LamB, Maltoporin (phage lambda and maltose receptor) [Carbohydrate transport and metabolism]	NA|389aa|down_6|NZ_CP021708.1_4139244_4140411_+	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]	NA|239aa|down_7|NZ_CP021708.1_4140460_4141177_+	PRK12358, PRK12358, glucosamine-6-phosphate deaminase	NA|222aa|down_8|NZ_CP021708.1_4141256_4141922_-	PRK10563, PRK10563, 6-phosphogluconate phosphatase; Provisional	NA|446aa|down_9|NZ_CP021708.1_4142091_4143429_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]
