assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002173595.1_ASM217359v1	NZ_CP021487	Pediococcus acidilactici strain SRCM100313 chromosome, complete genome	1	438413-439040	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,csn2	csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	Type II-A	GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC,GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGAT	35,36,35	0	0	NA	NA	NA:NA:NA	7,8,9	9	TypeII-A	csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	NA,NA	NA|182aa|up_9|NZ_CP021487.1_422054_422600_+	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|641aa|up_8|NZ_CP021487.1_422586_424509_+	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|518aa|up_7|NZ_CP021487.1_424581_426135_+	PRK00074, guaA, GMP synthase; Reviewed	NA|215aa|up_6|NZ_CP021487.1_426418_427063_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|470aa|up_5|NZ_CP021487.1_427255_428665_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|845aa|up_4|NZ_CP021487.1_428691_431226_+	cd09601, M1_APN-Q_like, Peptidase M1 aminopeptidase N catalytic domain family which includes aminopeptidase N (APN), aminopeptidase Q (APQ), tricorn interacting factor F3, and endoplasmic reticulum aminopeptidase 1 (ERAP1)	NA|192aa|up_3|NZ_CP021487.1_431453_432029_-	pfam10351, Apt1, Golgi-body localization protein domain	cas1|302aa|up_2|NZ_CP021487.1_436527_437433_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NZ_CP021487.1_437410_437716_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NZ_CP021487.1_437712_438384_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|216aa|down_0|NZ_CP021487.1_439689_440337_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|down_1|NZ_CP021487.1_440526_440811_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_2|NZ_CP021487.1_440833_442456_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|611aa|down_3|NZ_CP021487.1_442755_444588_+	pfam13520, AA_permease_2, Amino acid permease	NA|392aa|down_4|NZ_CP021487.1_444809_445985_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|213aa|down_5|NZ_CP021487.1_446052_446691_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|440aa|down_6|NZ_CP021487.1_446722_448042_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|129aa|down_7|NZ_CP021487.1_448326_448713_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|185aa|down_8|NZ_CP021487.1_448841_449396_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|788aa|down_9|NZ_CP021487.1_449544_451908_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed
GCF_002173595.1_ASM217359v1	NZ_CP021487	Pediococcus acidilactici strain SRCM100313 chromosome, complete genome	2	624068-624171	2	CRISPRCasFinder	no		csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	TTAGCTCAGTTGGGAGAGCATCTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	NA|85aa|up_9|NZ_CP021487.1_607458_607713_+,NA|63aa|up_6|NZ_CP021487.1_611954_612143_+,NA|244aa|down_0|NZ_CP021487.1_626088_626820_-	NA|85aa|up_9|NZ_CP021487.1_607458_607713_+	NA	NA|326aa|up_8|NZ_CP021487.1_608330_609308_+	PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional	NA|736aa|up_7|NZ_CP021487.1_609531_611739_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|63aa|up_6|NZ_CP021487.1_611954_612143_+	NA	NA|89aa|up_5|NZ_CP021487.1_612285_612552_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|575aa|up_4|NZ_CP021487.1_612551_614276_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|258aa|up_3|NZ_CP021487.1_614348_615122_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|396aa|up_2|NZ_CP021487.1_615207_616395_+	cd03817, GT4_UGDG-like, UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins	NA|339aa|up_1|NZ_CP021487.1_616425_617442_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|335aa|up_0|NZ_CP021487.1_617486_618491_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|244aa|down_0|NZ_CP021487.1_626088_626820_-	NA	NA|397aa|down_1|NZ_CP021487.1_626991_628182_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|490aa|down_2|NZ_CP021487.1_628357_629827_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|188aa|down_3|NZ_CP021487.1_629906_630470_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|212aa|down_4|NZ_CP021487.1_630462_631098_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|806aa|down_5|NZ_CP021487.1_631503_633921_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|561aa|down_6|NZ_CP021487.1_634176_635859_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|240aa|down_7|NZ_CP021487.1_635869_636589_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|277aa|down_8|NZ_CP021487.1_636695_637526_-	cd01171, YXKO-related, B	NA|154aa|down_9|NZ_CP021487.1_637651_638113_+	pfam00582, Usp, Universal stress protein family
GCF_002173595.1_ASM217359v1	NZ_CP021487	Pediococcus acidilactici strain SRCM100313 chromosome, complete genome	3	1509457-1509613	2	PILER-CR	no		csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	Orphan	ATCTCTTCGTCGCCTAGCTCCTCGACATTACTGTGAC	37	0	0	NA	NA	NA	2	2	Orphan	csa3,cas1,cas2,csn2,DEDDh,DinG,cas3	NA|245aa|up_9|NZ_CP021487.1_1498341_1499076_-,NA	NA|245aa|up_9|NZ_CP021487.1_1498341_1499076_-	NA	NA|121aa|up_8|NZ_CP021487.1_1499318_1499681_-	pfam07843, DUF1634, Protein of unknown function (DUF1634)	NA|723aa|up_7|NZ_CP021487.1_1500690_1502859_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|523aa|up_6|NZ_CP021487.1_1502962_1504531_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|135aa|up_5|NZ_CP021487.1_1504597_1505002_-	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|377aa|up_4|NZ_CP021487.1_1505077_1506208_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|185aa|up_3|NZ_CP021487.1_1506288_1506843_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|272aa|up_2|NZ_CP021487.1_1506935_1507751_-	PRK14135, recX, recombination regulator RecX; Provisional	NA|153aa|up_1|NZ_CP021487.1_1507803_1508262_+	PRK07308, PRK07308, flavodoxin; Validated	NA|209aa|up_0|NZ_CP021487.1_1508464_1509091_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|332aa|down_0|NZ_CP021487.1_1511229_1512225_-	PRK13055, PRK13055, putative lipid kinase; Reviewed	NA|476aa|down_1|NZ_CP021487.1_1512252_1513680_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|487aa|down_2|NZ_CP021487.1_1513679_1515140_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|105aa|down_3|NZ_CP021487.1_1515139_1515454_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|386aa|down_4|NZ_CP021487.1_1515473_1516631_-	pfam07537, CamS, CamS sex pheromone cAM373 precursor	NA|380aa|down_5|NZ_CP021487.1_1519068_1520208_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|191aa|down_6|NZ_CP021487.1_1520241_1520814_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|214aa|down_7|NZ_CP021487.1_1520835_1521477_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|203aa|down_8|NZ_CP021487.1_1521577_1522186_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|373aa|down_9|NZ_CP021487.1_1525537_1526656_+	pfam15983, DUF4767, Domain of unknown function (DUF4767)
