The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019221	Mycobacterium chimaera strain CDC 2015-22-71, complete genome	6078402	272945	342555	6078402	transposase,integrase	Rhodococcus_phage(20.0%)	55	329332:329391	350920:352439
WP_042910414.1|272945_274151_-|integrase	site-specific integrase	integrase	G9FGY1	Rhodococcus_phage	54.6	2.9e-113
WP_042910415.1|274188_274389_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_142383088.1|275301_275673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154074405.1|276099_276246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142383089.1|277257_277998_+	chemotaxis protein	NA	NA	NA	NA	NA
WP_142383090.1|277994_278717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051445816.1|278713_284551_-	relaxase domain-containing protein	NA	NA	NA	NA	NA
WP_051445817.1|284828_285314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142383091.1|285585_285822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042910451.1|286481_286664_-	antitoxin VbhA family protein	NA	NA	NA	NA	NA
WP_080691128.1|286767_287802_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1P8DJP1	Virus_Rctr41k	26.6	2.3e-05
WP_042910420.1|287948_288509_-	RES domain-containing protein	NA	NA	NA	NA	NA
WP_042910421.1|288505_288847_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_042910422.1|292294_292927_-	CAP domain-containing protein	NA	NA	NA	NA	NA
WP_087139799.1|293288_293747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051445819.1|293944_294622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054585687.1|294625_296080_-	MCE family protein	NA	NA	NA	NA	NA
WP_042910424.1|296081_297221_-	MCE family protein	NA	NA	NA	NA	NA
WP_042910425.1|297217_298549_-	MCE family protein	NA	NA	NA	NA	NA
WP_051445822.1|298545_299805_-	MCE family protein	NA	NA	NA	NA	NA
WP_042910426.1|299801_300830_-	MCE family protein	NA	NA	NA	NA	NA
WP_054585688.1|300887_302231_-	MCE family protein	NA	NA	NA	NA	NA
WP_054585689.1|302235_303093_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_051445820.1|303089_303875_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_101930933.1|305459_306182_-	DNA replication protein	NA	U5N3V8	Enterobacteria_phage	43.3	2.4e-46
WP_042910430.1|308173_308746_-	protocatechuate 3,4-dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_042910456.1|309578_310358_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_042910432.1|310956_311868_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_042910433.1|312131_313052_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_042910434.1|313112_314246_+	epoxide hydrolase	NA	NA	NA	NA	NA
WP_051445821.1|314910_316254_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_042910435.1|316250_316793_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_042910437.1|316898_317930_+	2,3-butanediol dehydrogenase	NA	NA	NA	NA	NA
WP_087139621.1|317984_319238_+	CoA transferase	NA	NA	NA	NA	NA
WP_042910439.1|319234_320401_+	transporter	NA	NA	NA	NA	NA
WP_042910440.1|320437_320881_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_042910459.1|320873_321929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042910177.1|322140_323550_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_042910179.1|323570_324107_+	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_042910181.1|324202_324643_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_042910183.1|324733_325621_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_054585743.1|325783_326317_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_042910184.1|326452_327196_+	class II aldolase/adducin family protein	NA	NA	NA	NA	NA
WP_101930916.1|328340_329375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
329332:329391	attL	CAGTACAACTGATATGTAGGCATTCTTTGTCAAGAGGCAGGTGAAAGCCGCCCCGGTTGG	NA	NA	NA	NA
WP_080691087.1|329649_330753_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_080691110.1|330827_331031_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_080691111.1|331205_332048_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA	NA
WP_042910185.1|333191_334091_+	alpha/beta fold hydrolase	NA	A0A0A7RWQ4	Mycobacterium_phage	37.2	4.5e-10
WP_087139801.1|334102_335410_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_042910186.1|335412_335928_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_042910187.1|335964_337197_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_054585634.1|337245_338190_+	extradiol ring-cleavage dioxygenase	NA	NA	NA	NA	NA
WP_042910189.1|338484_338880_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_042910040.1|339409_340474_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_080691086.1|341883_342555_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	U5P429	Shigella_phage	33.1	1.6e-15
350920:352439	attR	CCAACCGGGGCGGCTTTCACCTGCCTCTTGACAAAGAATGCCTACATATCAGTTGTACTGCCCAGGCAGGTTGGTTGAACAGATGTGACGACACGCTGTAGCGGTCGTTGGTGGGTGAAGGTCTCCTGTCGTGGAGTGGAGCTGCTACCACTTCACCGCACGAACAGGAGACCTTCATGGTCCACGCTAATGCCGTATTGACTCCTCGTGGGCGCTTGTTGCTGGCGCGTCGAGTCGTTGACGAGGGCTGGCCGATCGTCCGCGCCGCCGAGCATTTCCACGTGTCTTGGCCAACTGCCAAACGCTGGGCGTCGCGCTATGCGGCGATGGGGGCGGCCGGGATGACCGATCGGTCCAGCCGACCCCACCACTGTCCGAAGCGCACACCACAACCGGTGGTGCGCAAGATCGTGCATTTGCGATGGCACCACCGGCTTTCTCCACTGGCCATTGCGTCTCGGTTATCGATGCCGGCCTCCACGGTGCACGCGGTGTTGGTGCGGTGTCGACTGAATCGGCTGTCGCACATTGACATCCGCACTGGTGAAGTCATCCGCCGCTATGAACATGACCACCCCGGTTCGCTGATCCACGTCGACGTCAAGAAACTGGGCAACATCCCCGACGGTGGGGGCTGGCGCTTCGTGGGGCGCGCTCAAGGTTGGAAGAACCGACGATCCATGCCCACCGCCAAACGCAGCCGGTACCGCAACGAGTTGATGGGCCATTCCTTCGTGCACACCGTGATCGACGACCACTCCCGAGTGGCTTATGCCGAGATCCACGACGACGAAACCGCGGCTACTGCCATCGCGGTGCTGCGCCGCGCTATCGCTTGGTTCGCTGCTCGGGGCGTGGCTGTCAAGCACGTGCTATCAGACAACGGCTCCTGCTACCGCGCCCATGCCTGGCGCGACGCCTGTGCTGAGCTGCACGTCACGCCCAAACGGACCCGCGCTTACCGGCCCCAGACCAACGGCAAGATCGAACGCTTCACCGCACCATGGCCGCCGAATGGGCCTTCGCCCGCCACTACTCCAACGAACGCACCCGCCGCTCCGCCCTACCGGCCTGGCTGCACACCTACAATCACTGTGAGTCTTCACTCCTCGATCGGGAAGGTCCCACCCATCACGCGGTTGACCAACCTGCCTGGGCAGTACAACTAGTCGATTCAGAGCCACGCTCCTAATGAGGCCGGGGGGCGTGAACTTCTGCATCGGGCGCTGGCCCGGCTCGGTAGTGTGCGAAGGTGAGCGCCAAATCCGCTCGCTGACTCTCCTTGAGCAGGTCAATGCTTCGCGTCTGCGATACCTACGCTGACTGCCCGGCGTGAACTAGGCGCAATGCGTACCCGGACCCACGGCCGAACGCGGCTGTCCTCGCGACCGTTGCGCCGCCAATTATCACGACGGAACATGTGGGCGACACTGTACGCGGGCTGTCGTCGGCTGCGACCCCACCAAAGGCACACTCTAGCGCGAATCGGAGTTTGCGTCGCGCCGCGCGGATAGACGTGC	NA	NA	NA	NA
>prophage 2
NZ_CP019221	Mycobacterium chimaera strain CDC 2015-22-71, complete genome	6078402	908625	974067	6078402	transposase,integrase	Staphylococcus_phage(37.5%)	44	889021:889040	973863:973882
889021:889040	attL	GCGCGGGTTGCTGGTCGCCG	NA	NA	NA	NA
WP_101930856.1|908625_909258_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_007172184.1|909434_909905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172185.1|909901_912103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172186.1|912099_913824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101930855.1|913823_915314_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_007172195.1|919072_919399_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_007172196.1|920247_920868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_040624304.1|920868_921903_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	31.5	7.0e-31
WP_087139632.1|922153_923301_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	32.4	9.2e-32
WP_033717415.1|924422_925022_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_101930920.1|925450_926062_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172201.1|926137_926584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042910691.1|926698_927595_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_008263955.1|927591_930537_-	RND family transporter	NA	NA	NA	NA	NA
WP_007172204.1|931482_932124_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172205.1|932372_932537_+	DUF5078 domain-containing protein	NA	NA	NA	NA	NA
WP_008263966.1|935505_935925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033721600.1|936532_937543_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_042909972.1|939457_940732_-|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	48.0	4.8e-98
WP_042909917.1|941577_942720_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_042909971.1|942796_943453_-	transglutaminase family protein	NA	NA	NA	NA	NA
WP_042909918.1|943449_944907_-	cytochrome P450	NA	NA	NA	NA	NA
WP_007172211.1|946417_946870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172212.1|946884_947397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172213.1|947393_947729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033721564.1|947715_949107_-	DUF1446 domain-containing protein	NA	NA	NA	NA	NA
WP_007172215.1|949103_949277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172216.1|949733_950888_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_033721567.1|950928_952116_+	thiolase family protein	NA	NA	NA	NA	NA
WP_033721568.1|952127_952517_+	Zn-ribbon domain-containing OB-fold protein	NA	NA	NA	NA	NA
WP_157679851.1|952568_953114_+	hypothetical protein	NA	A0A2P1JQX9	Mycobacterium_phage	61.8	6.7e-41
WP_007172220.1|953507_955055_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	29.6	9.4e-48
WP_007172221.1|955117_956317_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_136244867.1|956956_957739_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_046184313.1|957953_958754_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_007172224.1|959141_960695_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.2	1.4e-35
WP_007172225.1|960787_961846_+	BtrH N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_033721541.1|962190_963642_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_085981746.1|964050_964701_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172228.1|964757_966056_+	cytochrome P450	NA	NA	NA	NA	NA
WP_007172229.1|966067_966259_+	ferredoxin	NA	NA	NA	NA	NA
WP_007172230.1|966380_967439_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_046186391.1|970328_972116_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	36.1	1.8e-82
WP_007172236.1|972828_974067_-|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	23.6	1.9e-06
973863:973882	attR	CGGCGACCAGCAACCCGCGC	NA	NA	NA	NA
>prophage 3
NZ_CP019221	Mycobacterium chimaera strain CDC 2015-22-71, complete genome	6078402	979033	1043839	6078402	transposase,integrase	Burkholderia_virus(20.0%)	47	978017:978049	1040832:1040864
978017:978049	attL	CGACACGGGGTCAGTTTTCAGACGACGCCGACA	NA	NA	NA	NA
WP_087588774.1|979033_980291_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	53.7	1.0e-68
WP_074021014.1|980967_981459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172252.1|981332_982112_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_007172254.1|982464_982914_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_007172255.1|983223_983931_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080691094.1|986448_987621_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_042910035.1|987542_987833_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_087588780.1|989437_990271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085981747.1|990348_991062_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_033721558.1|991064_991934_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_007172259.1|991940_993158_+	MCE family protein	NA	NA	NA	NA	NA
WP_007172260.1|993154_994198_+	MCE family protein	NA	NA	NA	NA	NA
WP_007172261.1|994194_995760_+	MCE family protein	NA	NA	NA	NA	NA
WP_007172262.1|995756_997271_+	virulence factor Mce family protein	NA	NA	NA	NA	NA
WP_033721559.1|997273_998401_+	virulence factor Mce family protein	NA	NA	NA	NA	NA
WP_007172264.1|998406_999951_+	MCE family protein	NA	NA	NA	NA	NA
WP_007172267.1|1001620_1002544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033721575.1|1004299_1005316_+	diiron oxygenase	NA	NA	NA	NA	NA
WP_007172270.1|1005528_1006392_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_075362367.1|1007021_1007828_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_007172273.1|1007897_1008767_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_007172274.1|1008738_1010367_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_007172275.1|1010363_1011317_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_007172276.1|1011644_1012052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172277.1|1012331_1012619_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_007172278.1|1012645_1013098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050485493.1|1013085_1014207_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_042909844.1|1014423_1015227_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	33.5	9.3e-31
WP_042909843.1|1016188_1016476_-	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_046182709.1|1016472_1018938_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_042909842.1|1018934_1020158_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_033721569.1|1021318_1022827_-	carboxylesterase/lipase family protein	NA	A0A0M4JT58	Mollivirus	32.8	8.1e-28
WP_033721570.1|1022959_1023856_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_007172283.1|1023908_1024349_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_033721572.1|1024397_1025042_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172286.1|1025165_1026659_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_007172287.1|1026655_1027753_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_007172600.1|1027795_1029004_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_007172288.1|1029274_1029820_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_046187034.1|1033126_1036060_-	MMPL family transporter	NA	NA	NA	NA	NA
WP_042909907.1|1036056_1036467_-	membrane protein	NA	NA	NA	NA	NA
WP_007172294.1|1036571_1037765_-	cytochrome P450	NA	NA	NA	NA	NA
WP_007172295.1|1037830_1038412_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033717424.1|1039057_1039681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087139652.1|1039665_1040277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101930934.1|1040918_1042172_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	31.1	6.1e-29
1040832:1040864	attR	TGTCGGCGTCGTCTGAAAACTGACCCCGTGTCG	NA	NA	NA	NA
WP_075630243.1|1042603_1043839_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	45.2	1.7e-84
>prophage 4
NZ_CP019221	Mycobacterium chimaera strain CDC 2015-22-71, complete genome	6078402	1067780	1141105	6078402	transposase,integrase	Staphylococcus_phage(50.0%)	46	1087310:1087326	1132912:1132928
WP_008256196.1|1067780_1068854_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_007168405.1|1072711_1073584_+	dehydrogenase	NA	NA	NA	NA	NA
WP_007168406.1|1073736_1074012_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_007168407.1|1074011_1074404_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_007168413.1|1079469_1080423_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_007168414.1|1080419_1081997_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_042909913.1|1082018_1082564_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_080576328.1|1082550_1082925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074021308.1|1082955_1083777_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_007168420.1|1084159_1084903_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_042909893.1|1085000_1085849_+	CoA transferase	NA	NA	NA	NA	NA
WP_019732177.1|1085845_1087021_+	thiolase family protein	NA	NA	NA	NA	NA
WP_007168424.1|1087030_1088707_+	long-chain-fatty-acid--CoA ligase	NA	NA	NA	NA	NA
1087310:1087326	attL	CCCGGCATCGCCGCGGT	NA	NA	NA	NA
WP_007168425.1|1088703_1089480_+	2,3-dehydroadipyl-CoA hydratase	NA	NA	NA	NA	NA
WP_007168426.1|1089487_1090636_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_007168427.1|1090661_1091420_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_046184758.1|1092407_1093760_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	34.6	6.3e-32
WP_007168431.1|1094387_1094714_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_042909891.1|1097296_1098532_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	45.2	1.0e-84
WP_101930903.1|1099383_1099974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101930905.1|1099970_1101065_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_007168437.1|1102456_1103623_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2K9VF00	Mycobacterium_phage	29.1	1.6e-07
WP_007168443.1|1106477_1106909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101930902.1|1109561_1111178_+	long-chain fatty acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	25.3	6.6e-28
WP_007168450.1|1111230_1112172_+	R2-like ligand-binding oxidase	NA	NA	NA	NA	NA
WP_007168451.1|1112378_1112804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101930904.1|1112821_1113946_+	thiolase family protein	NA	NA	NA	NA	NA
WP_007168453.1|1114012_1114906_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_007168454.1|1114936_1116556_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	28.1	1.1e-30
WP_007168455.1|1116788_1117925_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_007168458.1|1119599_1120817_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_074021181.1|1121343_1121841_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_007168461.1|1121948_1123355_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_007168467.1|1125677_1126004_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_007168468.1|1126352_1126631_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_154074411.1|1126627_1126783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007168470.1|1126858_1127308_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_040622630.1|1128568_1129651_+	dihydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_136244823.1|1132076_1132358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157137495.1|1133274_1133721_-	hypothetical protein	NA	A0A220NQR7	Corynebacterium_phage	40.8	2.9e-10
1132912:1132928	attR	ACCGCGGCGATGCCGGG	NA	NA	NA	NA
WP_075362207.1|1134346_1134658_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_101930934.1|1134673_1135927_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	31.1	6.1e-29
WP_007168486.1|1138328_1138670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007168487.1|1138690_1139098_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_033711258.1|1139101_1139374_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
WP_042909886.1|1139869_1141105_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	45.0	2.2e-84
>prophage 5
NZ_CP019221	Mycobacterium chimaera strain CDC 2015-22-71, complete genome	6078402	2153870	2210438	6078402	transposase,integrase	Tupanvirus(57.14%)	28	2154591:2154650	2216854:2218207
WP_080691159.1|2153870_2154536_+|transposase	TnsA-like heteromeric transposase endonuclease subunit	transposase	NA	NA	NA	NA
2154591:2154650	attL	TGAACCGCCCCGGGTTTGATGCACACCTTCTTTCGAGGGAAGGTTGTTCGCATCATGCCG	NA	NA	NA	NA
WP_087139680.1|2154644_2155914_+|transposase	IS3 family transposase	transposase	A0A2P1JR32	Mycobacterium_phage	41.7	3.7e-50
WP_042911237.1|2155943_2158058_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_080691160.1|2158063_2159233_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_074021449.1|2159308_2161849_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_069953761.1|2165285_2166098_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	33.1	3.8e-32
WP_042909843.1|2167062_2167350_-	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_046182709.1|2167346_2169812_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_042909842.1|2169808_2171032_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_157679854.1|2172143_2173943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042911243.1|2174120_2174381_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_042911244.1|2174801_2175389_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_142383138.1|2175707_2176139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142383139.1|2176169_2176547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087139682.1|2176509_2177448_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_042911246.1|2177846_2180846_-	nocobactin polyketide synthase NbtC	NA	NA	NA	NA	NA
WP_042911247.1|2180842_2182144_-	polyketide synthase	NA	NA	NA	NA	NA
WP_042911248.1|2182140_2182875_-	thioesterase	NA	NA	NA	NA	NA
WP_087139839.1|2182871_2183345_-	acetyltransferase	NA	NA	NA	NA	NA
WP_042911250.1|2183530_2188519_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	26.7	1.5e-94
WP_087139684.1|2188500_2192979_+	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	23.6	3.1e-35
WP_042911252.1|2193002_2196455_+	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	23.6	4.6e-34
WP_080691156.1|2196455_2197844_-	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA	NA
WP_080691157.1|2199926_2203967_-	non-ribosomal peptide synthetase	NA	A0A2K9L3I8	Tupanvirus	24.6	1.5e-41
WP_080691115.1|2204012_2205179_-	PLP-dependent cysteine synthase family protein	NA	A0A1W6JHY1	Lactococcus_phage	33.0	2.6e-34
WP_051445860.1|2206322_2207066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072501249.1|2207979_2208360_-	DUF4189 domain-containing protein	NA	NA	NA	NA	NA
WP_042909842.1|2209214_2210438_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
2216854:2218207	attR	CGGCATGATGCGAACAACCTTCCCTCGAAAGAAGGTGTGCATCAAACCCGGGGCGGTTCATCCCGCGCTGTGCGGTGTGTACGCAGCTGCTGTCCACGGTGCTTCCTTTGACGGCCGCGAAACCGGGCCGCCCGTAACAACTACTATCTATGTACAGAGATAGTAGTTGCTGCGGAGGCGCCCCACAATCACGAACTGAAGCGCATCGGCACACCTGCGGTGCGATCGGCCAGCCGTGTGCTCATCGCTTTGGGAGAGGCCCGGCGCCCGGGCGCGACGAGACGCCGGCAAGGTTGCGGCGAGTCGTTGTCCAATCGACGCACCCGGTCCACGTTTGCATTACTATCTACGTACGGAGAAAGTATCGCGATTCGGAGACCGGTGCGGCCCTGCCAGCGCGACAGACACCCGACACTGGTACCCGGGAGAGGTCCATAGTGCGGATACGAGGATTCGGAGAACTTGAGGCGGTCATCATGGACCGCATTTGGAACCGCGACCCGGCCGACGCGACCACAGTGCGCGAGGTCTTCGACGACCTTGCGGCCGAACGCACCATCGCGTACACGACGGTGATGTCCACGATGGACAACCTGCATACCAAGGGCTGGCTGCGGCGAGAACGCGATGGCAAGGCCTACCGGTATCGGCCCACCATGTCGCGCGAGCAGCACAGCGCCCGGCTCATGCGGGAGGCATTCGCCGGCGGCGGTCATCCCGATCTGGTGCTTCATCATTTCGTCGAACAGATCGGCCCTGAGGAATCCGCACGCCTGCGTGCTGCGCTGCGACGGCGGCGGTCGAAATGAGAGCCGACCAGCGGTGAACATCGCTATTTGCCTGCTGTTGTACAGCCTGGCGATGCTGGTCGCCGGACCGCCGCTGTTGCGTGAGCTGACTTGGCATGGACATGCCCCCCGATTTGGGGTTGCCGCCTGGTTGACCGCTATCGCCACGGTGCTACTGACCTGGCTGCTAGCAGCGGGAATGACCCTTCTCGCGGTAGCCAGTCACTGGATCTACCCGCGAGCGCTGGTGGAATCCTGTCTGGTCCGGTTGCGCGGCGTGGTGGCCCCCAGCATCACGCTGGGAGTAATCGGCGCAATGGTCGCGCTGCTGGCCGCGGTCAGCAGCGTGCGCCTGGCTAGCACCGTTTCGCGGATGCGTGCCCGCGCGCGTGCGCACGCCGAGGCGGTGTGCATGGTCGGTCATCGCAACGGCGATGGATATGTGCTTGTGGATGCCGCCGAGCCCGCCGCGTACTGTGTCGCAGGCCGGCCCCCCGCGATCGTCGTGACCAGCGCTGCCCTTGCTGCACTCGATGAGAAGGAGTTGGCTGCGGTCCTCGCCCACG	NA	NA	NA	NA
>prophage 6
NZ_CP019221	Mycobacterium chimaera strain CDC 2015-22-71, complete genome	6078402	4607366	4613942	6078402		Bacillus_phage(33.33%)	7	NA	NA
WP_042912786.1|4607366_4609532_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	3.3e-208
WP_008259183.1|4609501_4609954_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	40.2	5.8e-14
WP_008259184.1|4609985_4610225_-	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	63.2	1.3e-20
WP_008259185.1|4610753_4611308_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	34.4	1.2e-05
WP_008259186.1|4611399_4612014_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008259187.1|4612022_4613066_+	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	29.1	3.9e-21
WP_008259188.1|4613000_4613942_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	28.8	1.2e-05
>prophage 7
NZ_CP019221	Mycobacterium chimaera strain CDC 2015-22-71, complete genome	6078402	5171691	5180337	6078402		Burkholderia_phage(50.0%)	8	NA	NA
WP_014385777.1|5171691_5173218_+	cyclic nucleotide-binding domain-containing protein	NA	W8CYF6	Bacillus_phage	37.4	1.3e-12
WP_042913325.1|5173257_5174097_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_042913327.1|5174093_5174960_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_008260499.1|5174987_5175983_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.5	5.8e-75
WP_042913511.1|5175984_5176602_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	38.8	1.3e-27
WP_042913329.1|5176801_5177923_+	acyltransferase	NA	A9YX16	Burkholderia_phage	27.7	2.9e-14
WP_042913331.1|5178052_5179189_+	acyltransferase	NA	A9YX16	Burkholderia_phage	28.0	2.6e-18
WP_042913512.1|5179248_5180337_+	acyltransferase	NA	A9YX16	Burkholderia_phage	29.4	1.3e-16
>prophage 1
NZ_CP019224	Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_1, complete sequence	97268	13670	71927	97268	integrase,protease,transposase	Mycobacterium_phage(50.0%)	56	41635:41651	74974:74990
WP_007172409.1|13670_14771_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	24.5	1.1e-05
WP_007172408.1|14760_15330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101930848.1|16041_17040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172406.1|17056_17350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172405.1|17564_17822_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_007172404.1|17818_18103_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_023363524.1|18184_18946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139315444.1|18948_19671_-	ParA family protein	NA	NA	NA	NA	NA
WP_023363522.1|20367_21228_+	DUF2637 domain-containing protein	NA	NA	NA	NA	NA
WP_007172379.1|21449_22970_+	DUF4226 domain-containing protein	NA	V5UPX1	Mycobacterium_phage	41.6	6.5e-09
WP_041321561.1|22997_23312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172377.1|23387_23693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080674297.1|23574_25416_+	PE family protein	NA	NA	NA	NA	NA
WP_007172375.1|25412_25754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172374.1|25866_27054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172373.1|27439_27856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080674296.1|28016_29924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172369.1|30255_30540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023363514.1|30502_31093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172368.1|31148_31586_-	WhiB family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172367.1|31892_32399_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_040624378.1|32504_32756_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_007172365.1|32752_33046_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_139315443.1|33263_33971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139315442.1|33984_34683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172361.1|34797_35877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139315441.1|35986_36658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139315440.1|36781_37054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139315439.1|37284_37716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_074021534.1|39147_40050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023363510.1|40046_40769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_040624340.1|41089_42742_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A7P9	Microcystis_virus	26.6	8.0e-21
41635:41651	attL	GGGCTGCTTCCCGCCGC	NA	NA	NA	NA
WP_007172352.1|42741_43323_-|transposase	IS607 family transposase	transposase	F9VHY9	Thermus_phage	33.0	1.4e-23
WP_023363507.1|43465_44797_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_040624374.1|45078_45495_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_007172349.1|45497_45761_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA	NA
WP_142383462.1|45973_46837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051404593.1|46900_48004_+	hypothetical protein	NA	A0A1B3B1U7	Gordonia_phage	59.5	3.0e-32
WP_023363502.1|48089_49130_+	NlpC/P60 family protein	NA	V5UPI8	Mycobacterium_phage	41.7	1.1e-15
WP_101930849.1|49243_50689_+	type VII secretion protein EccB	NA	V5UN45	Mycobacterium_phage	34.7	1.3e-59
WP_007172344.1|50685_54912_+	type VII secretion protein EccC	NA	A0A0A0RUH6	Bacillus_phage	31.7	2.8e-17
WP_007172343.1|55005_55302_+	PE family protein	NA	NA	NA	NA	NA
WP_007172342.1|55331_56486_+	PPE family protein	NA	NA	NA	NA	NA
WP_007172341.1|56629_56926_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_007172340.1|56970_57255_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_007172339.1|57333_58254_+	ESX secretion-associated protein EspG	NA	NA	NA	NA	NA
WP_083103273.1|58944_59847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080674295.1|59714_61358_+	type VII secretion integral membrane protein EccD	NA	NA	NA	NA	NA
WP_040624331.1|61374_63075_+|protease	type VII secretion-associated serine protease mycosin	protease	V5UPA7	Mycobacterium_phage	35.2	5.6e-70
WP_007172335.1|63074_64667_+	type VII secretion protein EccE	NA	NA	NA	NA	NA
WP_007172334.1|64689_66522_+	type VII secretion AAA-ATPase EccA	NA	V5UQM2	Mycobacterium_phage	30.7	6.3e-67
WP_007172333.1|66529_66856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154074434.1|67007_67151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172331.1|67184_69254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087588785.1|69250_70672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080691094.1|70754_71927_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
74974:74990	attR	GCGGCGGGAAGCAGCCC	NA	NA	NA	NA
