assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002164805.3_ASM216480v3	NZ_CP028555	Klebsiella variicola strain WCHKP19 chromosome, complete genome	1	23467-23598	1	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas3HD,WYL	Orphan	GCTTATACCGGCTGCTGATGGTGGGTGAAGCGCGAGGCCAG	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas3HD,WYL,TnsE_C,RT	NA|68aa|up_1|NZ_CP028555.2_22292_22496_+,NA|30aa|down_2|NZ_CP028555.2_26359_26449_-,NA|32aa|down_3|NZ_CP028555.2_27111_27207_+	NA|249aa|up_9|NZ_CP028555.2_14231_14978_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|541aa|up_8|NZ_CP028555.2_15276_16899_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|441aa|up_7|NZ_CP028555.2_16895_18218_+	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|116aa|up_6|NZ_CP028555.2_18318_18666_+	COG2149, COG2149, Predicted membrane protein [Function unknown]	NA|121aa|up_5|NZ_CP028555.2_18655_19018_+	pfam02656, DUF202, Domain of unknown function (DUF202)	NA|141aa|up_4|NZ_CP028555.2_19092_19515_+	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|443aa|up_3|NZ_CP028555.2_19518_20847_-	PRK02991, PRK02991, D-serine dehydratase; Provisional	NA|446aa|up_2|NZ_CP028555.2_20863_22201_-	PRK09921, PRK09921, permease DsdX; Provisional	NA|68aa|up_1|NZ_CP028555.2_22292_22496_+	NA	NA|308aa|up_0|NZ_CP028555.2_22425_23349_+	PRK10086, PRK10086, DNA-binding transcriptional regulator DsdC	NA|278aa|down_0|NZ_CP028555.2_24919_25753_-	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|149aa|down_1|NZ_CP028555.2_25822_26269_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|30aa|down_2|NZ_CP028555.2_26359_26449_-	NA	NA|32aa|down_3|NZ_CP028555.2_27111_27207_+	NA	NA|563aa|down_4|NZ_CP028555.2_27311_29000_+	PRK08155, PRK08155, acetolactate synthase large subunit	NA|96aa|down_5|NZ_CP028555.2_29003_29291_+	PRK08178, PRK08178, acetolactate synthase 1 small subunit	NA|198aa|down_6|NZ_CP028555.2_29443_30037_+	PRK10360, PRK10360, transcriptional regulator UhpA	NA|501aa|down_7|NZ_CP028555.2_30033_31536_+	PRK11644, PRK11644, signal transduction histidine-protein kinase/phosphatase UhpB	NA|443aa|down_8|NZ_CP028555.2_31547_32876_+	PRK11663, PRK11663, glucose-6-phosphate receptor/MFS transporter UhpC	NA|464aa|down_9|NZ_CP028555.2_33021_34413_+	PRK09556, uhpT, hexose-6-phosphate:phosphate antiporter
GCF_002164805.3_ASM216480v3	NZ_CP028555	Klebsiella variicola strain WCHKP19 chromosome, complete genome	2	1002090-1003216	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas3HD,WYL	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,29,29,28	1	1	1002607-1002638	NZ_CP028553.2_68667-68698	I-E:I-E:I-E:I-E	17,18,18,17	18	TypeI-E	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas3HD,WYL,TnsE_C,RT	NA,NA	NA|571aa|up_9|NZ_CP028555.2_990239_991952_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP028555.2_992050_992785_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|898aa|up_7|NZ_CP028555.2_992833_995527_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|518aa|up_6|NZ_CP028555.2_996115_997669_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|200aa|up_5|NZ_CP028555.2_997665_998265_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP028555.2_998286_999342_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP028555.2_999351_1000077_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP028555.2_1000076_1000781_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP028555.2_1000780_1001698_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP028555.2_1001700_1001994_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|352aa|down_0|NZ_CP028555.2_1004769_1005825_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|472aa|down_1|NZ_CP028555.2_1006062_1007478_+	PRK10637, cysG, siroheme synthase CysG	NA|303aa|down_2|NZ_CP028555.2_1007487_1008396_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_3|NZ_CP028555.2_1008405_1009833_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_4|NZ_CP028555.2_1009832_1010438_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|109aa|down_5|NZ_CP028555.2_1010488_1010815_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|106aa|down_6|NZ_CP028555.2_1010955_1011273_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_7|NZ_CP028555.2_1011292_1012003_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_8|NZ_CP028555.2_1012002_1012482_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_9|NZ_CP028555.2_1012478_1013528_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed
GCF_002164805.3_ASM216480v3	NZ_CP028555	Klebsiella variicola strain WCHKP19 chromosome, complete genome	3	3939599-3939707	3	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas3HD,WYL	Orphan	AGGGAGAGGGAGCACACCCTAAAAAAG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas3HD,WYL,TnsE_C,RT	NA,NA	NA|203aa|up_9|NZ_CP028555.2_3927592_3928201_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|421aa|up_8|NZ_CP028555.2_3928652_3929915_+	PRK11017, codB, cytosine permease; Provisional	NA|412aa|up_7|NZ_CP028555.2_3929911_3931147_+	pfam07905, PucR, Purine catabolism regulatory protein-like family	NA|413aa|up_6|NZ_CP028555.2_3931143_3932382_+	PRK09230, PRK09230, cytosine deaminase; Provisional	NA|328aa|up_5|NZ_CP028555.2_3932494_3933478_+	cd06278, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors	NA|270aa|up_4|NZ_CP028555.2_3933599_3934409_+	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|453aa|up_3|NZ_CP028555.2_3934519_3935878_+	cd17312, MFS_OPA_SLC37, Organophosphate:Pi antiporter/Solute Carrier family 37 of the Major Facilitator Superfamily of transporters	NA|423aa|up_2|NZ_CP028555.2_3935903_3937172_+	pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 2)	NA|343aa|up_1|NZ_CP028555.2_3937232_3938261_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|400aa|up_0|NZ_CP028555.2_3938362_3939562_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|414aa|down_0|NZ_CP028555.2_3939859_3941101_-	COG5276, COG5276, Uncharacterized conserved protein [Function unknown]	NA|355aa|down_1|NZ_CP028555.2_3941203_3942268_-	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily	NA|333aa|down_2|NZ_CP028555.2_3942288_3943287_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|501aa|down_3|NZ_CP028555.2_3943283_3944786_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|363aa|down_4|NZ_CP028555.2_3944949_3946038_+	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|248aa|down_5|NZ_CP028555.2_3946095_3946839_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|101aa|down_6|NZ_CP028555.2_3947022_3947325_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|135aa|down_7|NZ_CP028555.2_3947299_3947704_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|66aa|down_8|NZ_CP028555.2_3947700_3947898_-	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|702aa|down_9|NZ_CP028555.2_3947990_3950096_-	PRK15015, PRK15015, carbon starvation protein CstA
GCF_002164805.3_ASM216480v3	NZ_CP028555	Klebsiella variicola strain WCHKP19 chromosome, complete genome	4	4017259-4017392	4	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas3HD,WYL	Orphan	GGCAGACGCTGTTACTCCGGCAGATAAGGCCAAACGC	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas3HD,WYL,TnsE_C,RT	NA,NA|28aa|down_2|NZ_CP028555.2_4024428_4024512_+	NA|445aa|up_9|NZ_CP028555.2_4005494_4006829_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|303aa|up_8|NZ_CP028555.2_4006952_4007861_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|423aa|up_7|NZ_CP028555.2_4007964_4009233_-	PRK12893, PRK12893, Zn-dependent hydrolase	NA|337aa|up_6|NZ_CP028555.2_4009330_4010341_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|346aa|up_5|NZ_CP028555.2_4010330_4011368_-	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	NA|298aa|up_4|NZ_CP028555.2_4011371_4012265_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|318aa|up_3|NZ_CP028555.2_4012267_4013221_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|556aa|up_2|NZ_CP028555.2_4013239_4014907_-	cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|372aa|up_1|NZ_CP028555.2_4015233_4016349_+	PRK13516, PRK13516, gamma-glutamyl:cysteine ligase; Provisional	NA|240aa|up_0|NZ_CP028555.2_4016396_4017116_+	COG3698, COG3698, Predicted periplasmic protein [Function unknown]	NA|1031aa|down_0|NZ_CP028555.2_4017473_4020566_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|360aa|down_1|NZ_CP028555.2_4020579_4021659_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|28aa|down_2|NZ_CP028555.2_4024428_4024512_+	NA	NA|83aa|down_3|NZ_CP028555.2_4024937_4025186_+	pfam06643, DUF1158, Protein of unknown function (DUF1158)	NA|114aa|down_4|NZ_CP028555.2_4025202_4025544_-	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS	NA|367aa|down_5|NZ_CP028555.2_4025574_4026675_-	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|194aa|down_6|NZ_CP028555.2_4026869_4027451_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|123aa|down_7|NZ_CP028555.2_4027450_4027819_+	PRK10250, PRK10250, MmcQ/YjbR family DNA-binding protein	NA|218aa|down_8|NZ_CP028555.2_4027938_4028592_+	PRK11053, PRK11053, oxygen-insensitive NAD(P)H nitroreductase	NA|96aa|down_9|NZ_CP028555.2_4029033_4029321_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_002164805.3_ASM216480v3	NZ_CP028555	Klebsiella variicola strain WCHKP19 chromosome, complete genome	5	4756351-4756456	5	CRISPRCasFinder	no		cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas3HD,WYL	Orphan	GGGAGAGGGTTGGGGTGAGGGCAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,cas3HD,WYL,TnsE_C,RT	NA,NA	NA|452aa|up_9|NZ_CP028555.2_4745687_4747043_-	PRK11715, PRK11715, cell envelope integrity protein CreD	NA|475aa|up_8|NZ_CP028555.2_4747106_4748531_-	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	NA|230aa|up_7|NZ_CP028555.2_4748530_4749220_-	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	NA|158aa|up_6|NZ_CP028555.2_4749232_4749706_-	PRK10756, PRK10756, protein CreA	NA|290aa|up_5|NZ_CP028555.2_4749915_4750785_+	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA	NA|216aa|up_4|NZ_CP028555.2_4750781_4751429_-	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|172aa|up_3|NZ_CP028555.2_4751542_4752058_+	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|110aa|up_2|NZ_CP028555.2_4752044_4752374_-	PRK01381, PRK01381, trp operon repressor	NA|646aa|up_1|NZ_CP028555.2_4752462_4754400_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|556aa|up_0|NZ_CP028555.2_4754628_4756296_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|411aa|down_0|NZ_CP028555.2_4756471_4757704_-	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|461aa|down_1|NZ_CP028555.2_4757725_4759108_-	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|324aa|down_2|NZ_CP028555.2_4759117_4760089_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|216aa|down_3|NZ_CP028555.2_4760193_4760841_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|339aa|down_4|NZ_CP028555.2_4760840_4761857_+	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|240aa|down_5|NZ_CP028555.2_4761937_4762657_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|408aa|down_6|NZ_CP028555.2_4762759_4763983_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|441aa|down_7|NZ_CP028555.2_4764035_4765358_-	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|260aa|down_8|NZ_CP028555.2_4765471_4766251_-	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|262aa|down_9|NZ_CP028555.2_4766666_4767452_-	PRK11449, PRK11449, metal-dependent hydrolase
