assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002164635.4_ASM216463v4	NZ_CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	1	893749-894384	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT,c2c9_V-U4,DinG	Type I-E	TTTATCCCCGCTGGCGCGGGGAACAC,CGATTTATCCCCGCTGGCGCGGGGAACAC,TTTATCCCCGCTGGCGCGGGGAACAC	26,29,26	0	0	NA	NA	I-E:I-E:I-E	10,9,9	10	TypeI-E	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT,c2c9_V-U4,DinG	NA,NA	NA|254aa|up_9|NZ_CP022229.3_885619_886381_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP022229.3_886361_887411_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP022229.3_887407_887887_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP022229.3_887886_888597_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP022229.3_888615_888927_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP022229.3_889120_889444_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP022229.3_889493_890099_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP022229.3_890098_891526_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP022229.3_891527_892436_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP022229.3_892687_893725_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP022229.3_894480_894774_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP022229.3_894770_895694_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP022229.3_895690_896341_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP022229.3_896322_897069_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP022229.3_897079_898135_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP022229.3_898149_898686_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP022229.3_898682_900245_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP022229.3_900342_903042_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP022229.3_903236_903389_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP022229.3_903653_904388_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_002164635.4_ASM216463v4	NZ_CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	2	921522-921855	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT,c2c9_V-U4,DinG	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,4	5	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT,c2c9_V-U4,DinG	NA,NA	NA|87aa|up_9|NZ_CP022229.3_909993_910254_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP022229.3_910270_910846_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|450aa|up_7|NZ_CP022229.3_910980_912329_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|287aa|up_6|NZ_CP022229.3_912428_913289_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP022229.3_913285_914065_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP022229.3_914042_915380_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP022229.3_915473_916928_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP022229.3_916997_917783_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP022229.3_918101_919379_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP022229.3_919405_920884_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP022229.3_922193_922865_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP022229.3_923158_924031_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP022229.3_924090_925389_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP022229.3_925475_927113_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP022229.3_927340_928132_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP022229.3_928203_928539_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP022229.3_928538_928787_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP022229.3_928864_931099_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP022229.3_931146_932448_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP022229.3_932504_935261_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_002164635.4_ASM216463v4	NZ_CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	3	2686879-2687028	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT,c2c9_V-U4,DinG	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT,c2c9_V-U4,DinG	NA|532aa|up_6|NZ_CP022229.3_2678185_2679781_+,NA	NA|238aa|up_9|NZ_CP022229.3_2676088_2676802_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP022229.3_2676872_2677466_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP022229.3_2677610_2678063_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|532aa|up_6|NZ_CP022229.3_2678185_2679781_+	NA	NA|335aa|up_5|NZ_CP022229.3_2679836_2680841_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP022229.3_2681002_2681419_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP022229.3_2681464_2681968_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP022229.3_2682160_2683357_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP022229.3_2683412_2686268_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP022229.3_2686267_2686711_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP022229.3_2687064_2688576_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP022229.3_2688842_2689943_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP022229.3_2689942_2691025_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP022229.3_2691185_2692688_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP022229.3_2692765_2693764_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP022229.3_2693830_2695150_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP022229.3_2695212_2695977_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP022229.3_2696000_2697032_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP022229.3_2697248_2697812_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP022229.3_2697815_2698835_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
