assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002164635.2_ASM216463v2	NZ_CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	1	1071171-1071504	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,5,5	5	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|919aa|up_9|NZ_CP022229.1_1057764_1060521_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP022229.1_1060577_1061879_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP022229.1_1061926_1064161_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP022229.1_1064238_1064487_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP022229.1_1064486_1064822_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP022229.1_1064893_1065685_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP022229.1_1065912_1067550_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP022229.1_1067636_1068935_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP022229.1_1068994_1069867_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP022229.1_1070160_1070832_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP022229.1_1072141_1073620_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP022229.1_1073646_1074924_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP022229.1_1075242_1076028_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP022229.1_1076097_1077552_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP022229.1_1077645_1078983_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP022229.1_1078960_1079740_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP022229.1_1079736_1080597_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|NZ_CP022229.1_1080696_1082045_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|NZ_CP022229.1_1082179_1082755_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP022229.1_1082771_1083032_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_002164635.2_ASM216463v2	NZ_CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	2	1098642-1099216	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA	26,26,26	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|245aa|up_9|NZ_CP022229.1_1088637_1089372_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP022229.1_1089636_1089789_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP022229.1_1089983_1092683_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP022229.1_1092780_1094343_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP022229.1_1094339_1094876_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP022229.1_1094890_1095946_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP022229.1_1095956_1096703_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP022229.1_1096684_1097335_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP022229.1_1097331_1098255_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP022229.1_1098251_1098545_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP022229.1_1099300_1100338_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP022229.1_1100589_1101498_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP022229.1_1101499_1102927_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP022229.1_1102926_1103532_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP022229.1_1103581_1103905_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP022229.1_1104098_1104410_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP022229.1_1104428_1105139_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP022229.1_1105138_1105618_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP022229.1_1105614_1106664_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP022229.1_1106644_1107406_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002164635.2_ASM216463v2	NZ_CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	3	2325381-2325504	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|75aa|down_7|NZ_CP022229.1_2334090_2334315_-,NA|30aa|down_8|NZ_CP022229.1_2334401_2334491_+	NA|471aa|up_9|NZ_CP022229.1_2314833_2316246_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP022229.1_2316802_2317012_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP022229.1_2317467_2318094_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP022229.1_2318114_2320217_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP022229.1_2320220_2320868_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP022229.1_2320931_2321600_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP022229.1_2321596_2322382_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP022229.1_2322385_2323198_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP022229.1_2323209_2324814_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP022229.1_2324939_2325245_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP022229.1_2325819_2327076_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP022229.1_2327116_2328490_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP022229.1_2328704_2329346_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP022229.1_2329385_2330534_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP022229.1_2330824_2332036_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP022229.1_2332148_2333081_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP022229.1_2333077_2334103_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|NZ_CP022229.1_2334090_2334315_-	NA	NA|30aa|down_8|NZ_CP022229.1_2334401_2334491_+	NA	NA|390aa|down_9|NZ_CP022229.1_2334656_2335826_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCF_002164635.2_ASM216463v2	NZ_CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	4	3073618-3073709	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_CP022229.1_3062869_3063079_-,NA	NA|70aa|up_9|NZ_CP022229.1_3062869_3063079_-	NA	NA|1321aa|up_8|NZ_CP022229.1_3063133_3067096_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP022229.1_3067135_3067774_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|383aa|up_6|NZ_CP022229.1_3068004_3069153_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP022229.1_3069152_3069845_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP022229.1_3069856_3070243_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|271aa|up_3|NZ_CP022229.1_3070250_3071063_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP022229.1_3071059_3071650_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP022229.1_3071660_3072155_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP022229.1_3072175_3073504_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP022229.1_3074132_3074729_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP022229.1_3074749_3074977_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP022229.1_3075014_3076256_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP022229.1_3076548_3077805_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP022229.1_3078064_3078985_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP022229.1_3078984_3079290_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|450aa|down_6|NZ_CP022229.1_3079387_3080736_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|200aa|down_7|NZ_CP022229.1_3080818_3081418_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_8|NZ_CP022229.1_3081414_3083961_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_9|NZ_CP022229.1_3083960_3085133_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC
GCF_002164635.2_ASM216463v2	NZ_CP022229	Escherichia coli strain WCHEC96200 chromosome, complete genome	5	4405381-4405530	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|532aa|down_6|NZ_CP022229.1_4412627_4414223_-	NA|340aa|up_9|NZ_CP022229.1_4393573_4394593_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP022229.1_4394596_4395160_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP022229.1_4395376_4396408_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP022229.1_4396431_4397196_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP022229.1_4397258_4398578_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP022229.1_4398644_4399643_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP022229.1_4399720_4401223_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP022229.1_4401383_4402466_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP022229.1_4402465_4403566_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP022229.1_4403832_4405344_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP022229.1_4405697_4406141_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP022229.1_4406140_4408996_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP022229.1_4409051_4410248_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP022229.1_4410440_4410944_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP022229.1_4410989_4411406_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP022229.1_4411567_4412572_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|532aa|down_6|NZ_CP022229.1_4412627_4414223_-	NA	NA|151aa|down_7|NZ_CP022229.1_4414345_4414798_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP022229.1_4414942_4415536_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP022229.1_4415606_4416320_+	PRK12742, PRK12742, SDR family oxidoreductase
