The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019560	Escherichia coli strain KSC1031 chromosome, complete genome	4707009	891463	952476	4707009	integrase,tail,terminase,capsid,portal,lysis,head,transposase	Enterobacteria_phage(35.85%)	75	922558:922574	957171:957187
WP_057696358.1|891463_892924_-	mannitol dehydrogenase family protein	NA	G8DCZ3	Micromonas_pusilla_virus	29.6	2.1e-41
WP_000347482.1|893012_894296_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_120795384.1|894898_895012_+	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_000836768.1|895080_895314_+	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_000086522.1|895630_896221_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	39.3	1.5e-25
WP_000885610.1|896318_896894_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	94.8	2.5e-102
WP_072135106.1|896893_900244_-	short-chain fatty acid transporter	NA	X2KTY7	Enterobacteria_phage	35.5	2.4e-11
WP_032202908.1|900308_900908_-	Ail/Lom family outer membrane beta-barrel protein	NA	A0A0P0ZCF6	Stx2-converting_phage	98.5	2.2e-109
WP_053265888.1|900974_904457_-	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	89.7	0.0e+00
WP_000090873.1|904516_905149_-|tail	tail assembly protein	tail	A0A2R9YJH6	Escherichia_phage	99.0	6.5e-96
WP_053265887.1|905085_905829_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	97.2	1.1e-147
WP_001152612.1|905834_906533_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	98.7	2.1e-132
WP_000847345.1|906532_906862_-|tail	phage tail protein	tail	A0A0K2FIE9	Enterobacteria_phage	98.2	8.1e-58
WP_053265886.1|906858_909438_-|tail	phage tail tape measure protein	tail	A0A2R9YJM8	Escherichia_phage	98.1	0.0e+00
WP_000459480.1|909430_909865_-|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	99.2	2.0e-64
WP_001537876.1|909846_910269_-|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	95.7	2.0e-69
WP_001439072.1|910284_911025_-|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	97.2	4.0e-129
WP_000683143.1|911032_911428_-|tail	tail protein	tail	A0A2R9YJI2	Escherichia_phage	98.5	8.5e-70
WP_053265885.1|911424_912003_-|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	96.9	5.0e-79
WP_000752994.1|912014_912368_-|tail	tail attachment protein	tail	A0A2R9YJJ5	Escherichia_phage	100.0	9.0e-63
WP_000158880.1|912379_912775_-	DNA-packaging protein FI	NA	A0A2R9YJP4	Escherichia_phage	93.9	2.2e-57
WP_000063224.1|912816_913842_-|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	97.7	1.8e-188
WP_001549228.1|913897_914230_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	99.1	5.0e-55
WP_000123333.1|914239_915559_-	S49 family peptidase	NA	A0A2I6TC87	Escherichia_phage	98.9	1.6e-234
WP_001345555.1|915539_917141_-|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	99.4	1.3e-310
WP_000198149.1|917137_917344_-|head,tail	Lambda prophage-derived head-to-tail joining protein W	head,tail	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
WP_001027297.1|917340_919266_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	99.8	0.0e+00
WP_000453603.1|919240_919786_-	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.9	8.1e-95
WP_032145128.1|920174_920369_+	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	95.2	1.6e-26
WP_020239410.1|920619_920826_-	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	79.4	3.4e-22
WP_001019207.1|921121_921295_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
WP_001443523.1|921467_921623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071526745.1|921770_921959_-	cold-shock protein	NA	NA	NA	NA	NA
WP_000066495.1|921969_922182_-	cold shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.2e-22
WP_001071776.1|922545_923043_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
922558:922574	attL	TTTTTTATCTCTTAAAG	NA	NA	NA	NA
WP_001092971.1|923039_923573_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
WP_000189918.1|923569_923881_-	DUF1327 domain-containing protein	NA	K7PGU6	Enterobacteria_phage	62.6	5.0e-25
WP_000839587.1|923885_924101_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	94.4	2.9e-32
WP_033557399.1|924291_925005_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000592549.1|925411_926371_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA	NA
WP_000780584.1|926563_927088_+	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	52.9	1.0e-46
WP_001204787.1|927243_927621_-	antitermination protein	NA	Q777W5	Enterobacteria_phage	82.5	1.8e-53
WP_001265274.1|927638_928688_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	58.2	3.0e-114
WP_032236628.1|928689_928968_-	hypothetical protein	NA	I6PCV7	Cronobacter_phage	46.9	1.3e-11
WP_000980999.1|929034_929286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813254.1|929502_929658_-	type I toxin-antitoxin system toxin HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
WP_000323025.1|929729_930017_-	type II toxin-antitoxin system mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
WP_000534858.1|930016_930256_-	type II toxin-antitoxin system antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
WP_071600497.1|930280_930586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001349760.1|930788_931121_+	protein flxA	NA	NA	NA	NA	NA
WP_053265882.1|931557_932898_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_001533279.1|933075_933354_+	hypothetical protein	NA	Q7Y2Q9	Escherichia_phage	100.0	1.3e-08
WP_001533280.1|933434_934394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001599153.1|934810_935233_-	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	92.6	2.6e-64
WP_001533283.1|935273_936239_-	hypothetical protein	NA	U5P0A0	Shigella_phage	60.2	1.7e-55
WP_000705349.1|936219_936741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000476994.1|936724_936952_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_001003381.1|937029_937437_+	helix-turn-helix domain-containing protein	NA	I6PD69	Cronobacter_phage	46.2	2.5e-24
WP_000379575.1|937629_937785_+	DUF1391 family protein	NA	M4QQ57	Salicola_phage	53.2	3.0e-07
WP_000344950.1|937786_938362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854559.1|938848_939037_+	cell division inhibition protein DicB	NA	NA	NA	NA	NA
WP_087548850.1|939033_939225_+	DUF1482 family protein	NA	NA	NA	NA	NA
WP_085948466.1|939252_940414_+|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
WP_001774503.1|940578_943050_+	exonuclease	NA	A0A192Y6E0	Salmonella_phage	57.5	8.5e-59
WP_001296941.1|943137_943374_+	excisionase family protein	NA	S4TND0	Salmonella_phage	50.7	6.1e-15
WP_000876976.1|943408_944689_+|integrase	site-specific integrase	integrase	B6DZ48	Enterobacteria_phage	62.6	1.0e-156
WP_001389342.1|944690_944819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057696360.1|944876_945896_-	Zn-dependent oxidoreductase	NA	E3SJ82	Synechococcus_phage	25.9	3.7e-16
WP_057696361.1|945907_947122_-	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	28.8	6.9e-46
WP_000598292.1|947327_947654_-	YnfA family protein	NA	A0A218MNG8	uncultured_virus	55.6	9.9e-24
WP_000705197.1|947788_948130_+	DUF1283 family protein	NA	NA	NA	NA	NA
WP_001138581.1|948164_948725_+	spermidine N1-acetyltransferase	NA	NA	NA	NA	NA
WP_001321287.1|948727_949438_-	YnfC family lipoprotein	NA	NA	NA	NA	NA
WP_001307224.1|949545_949851_+	DUF1161 domain-containing protein	NA	NA	NA	NA	NA
WP_057696362.1|950049_952476_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	49.0	1.3e-213
957171:957187	attR	TTTTTTATCTCTTAAAG	NA	NA	NA	NA
>prophage 2
NZ_CP019560	Escherichia coli strain KSC1031 chromosome, complete genome	4707009	1374830	1387596	4707009		Bacillus_phage(25.0%)	12	NA	NA
WP_000969630.1|1374830_1375697_-	glycosyltransferase	NA	A0A0F7L2F7	uncultured_marine_virus	39.3	1.8e-08
WP_000453202.1|1375693_1376545_-	alpha-1,2-fucosyltransferase	NA	A0A2H4UUT1	Bodo_saltans_virus	31.6	2.6e-31
WP_001034332.1|1376534_1377977_-	O128 family O-antigen flippase	NA	NA	NA	NA	NA
WP_000499109.1|1377973_1378285_-	transferase	NA	NA	NA	NA	NA
WP_000736845.1|1378527_1379907_-	phosphomannomutase CpsG	NA	A0A127AWJ1	Bacillus_phage	27.9	3.8e-32
WP_000005745.1|1379910_1381359_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	31.0	2.8e-54
WP_001371039.1|1381351_1381852_-	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA	NA
WP_000479702.1|1381854_1382820_-	GDP-L-fucose synthase	NA	D1LW79	Prochlorococcus_phage	51.0	4.9e-87
WP_000360027.1|1382823_1383948_-	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	64.4	5.8e-132
WP_000590601.1|1383960_1385082_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_000183060.1|1385464_1386358_-	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	42.0	1.0e-46
WP_000999466.1|1386600_1387596_-	SDR family oxidoreductase	NA	A0A1V0QG29	Shearwaterpox_virus	26.3	1.9e-09
>prophage 3
NZ_CP019560	Escherichia coli strain KSC1031 chromosome, complete genome	4707009	1489565	1499007	4707009		Enterobacteria_phage(85.71%)	10	NA	NA
WP_001292774.1|1489565_1490702_+	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.1e-162
WP_001298843.1|1490698_1492699_+	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.0	0.0e+00
WP_001295429.1|1492823_1493285_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
WP_001295430.1|1493325_1493796_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_000598641.1|1493842_1494562_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295431.1|1494558_1496244_-	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_001240401.1|1496465_1497197_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
WP_001216963.1|1497256_1497364_+	protein YohO	NA	NA	NA	NA	NA
WP_000783120.1|1497344_1498076_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_000569329.1|1498080_1499007_-	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
>prophage 4
NZ_CP019560	Escherichia coli strain KSC1031 chromosome, complete genome	4707009	1960687	2052265	4707009	tail,terminase,tRNA,capsid,plate,protease,portal,holin,head,transposase	Shigella_phage(42.11%)	97	NA	NA
WP_001298974.1|1960687_1961425_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219193.1|1961556_1962891_+	ATP-dependent RNA helicase SrmB	NA	E3T5E1	Cafeteria_roenbergensis_virus	30.8	2.9e-45
WP_087548868.1|1963161_1964142_+|transposase	IS110-like element IS621 family transposase	transposase	NA	NA	NA	NA
WP_000365855.1|1964378_1965260_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000189207.1|1965362_1965950_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627807.1|1966005_1966389_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	72.0	1.4e-32
WP_001262716.1|1966693_1967383_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	48.8	7.1e-56
WP_000997403.1|1967430_1968468_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001098726.1|1968674_1969094_+	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	38.5	2.8e-15
WP_001298975.1|1969162_1969861_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_000082969.1|1969892_1972553_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_000949265.1|1972666_1974022_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001300818.1|1974067_1974391_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_000841103.1|1974387_1975686_-	alpha-ketoglutarate permease	NA	Q6JIH2	Burkholderia_virus	32.2	1.3e-45
WP_001235102.1|1981541_1984115_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.3	2.6e-127
WP_057696627.1|1984244_1984976_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079107.1|1984972_1985953_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197686.1|1986087_1986825_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178456.1|1987095_1987437_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_001386991.1|1987540_1987588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200116.1|1987686_1988847_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000225221.1|1988889_1990011_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168044.1|1990021_1991092_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.2	4.0e-90
WP_000976004.1|1991301_1991667_+	DUF2799 domain-containing protein	NA	NA	NA	NA	NA
WP_001212391.1|1991816_1992335_+	YfiR family protein	NA	NA	NA	NA	NA
WP_000969032.1|1992324_1993551_+	diguanylate cyclase DgcN	NA	NA	NA	NA	NA
WP_000589828.1|1993566_1994049_+	OmpA family protein	NA	NA	NA	NA	NA
WP_000065253.1|1994125_1994473_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000264777.1|1994514_1995282_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043335.1|1995312_1995861_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256450.1|1995879_1996128_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460035.1|1996264_1997626_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001338897.1|1997792_1998584_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_010723175.1|1998604_1999891_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001287917.1|2000013_2000619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001300112.1|2000653_2001244_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059169.1|2001366_2002245_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880910.1|2002330_2003992_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203437.1|2004140_2004482_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001117838.1|2004543_2004834_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000600190.1|2004823_2005300_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA	NA
WP_000162574.1|2005431_2005914_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
WP_001519527.1|2006660_2007422_-	hypothetical protein	NA	Q6J1W3	Lactobacillus_phage	35.0	8.5e-10
WP_000258782.1|2007755_2008106_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000560788.1|2008109_2008643_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_000355484.1|2009333_2010107_+	hypothetical protein	NA	G9IA57	Pseudomonas_phage	38.5	2.4e-36
WP_087548869.1|2010164_2010719_-	site-specific DNA recombinase	NA	A0A1S6L009	Salmonella_phage	88.4	3.3e-88
WP_000383559.1|2012924_2013509_-	YmfQ family protein	NA	O22003	Shigella_phage	99.5	2.4e-113
WP_087548871.1|2013499_2014558_-|plate	baseplate J/gp47 family protein	plate	M1FQW3	Enterobacteria_phage	98.9	2.1e-200
WP_000424737.1|2014544_2014970_-	hypothetical protein	NA	U5P0R9	Shigella_phage	99.3	6.7e-81
WP_001259084.1|2014969_2015518_-|plate	phage baseplate assembly protein	plate	U5P081	Shigella_phage	98.9	5.1e-97
WP_000999510.1|2015517_2016597_-|plate	baseplate protein	plate	U5P0H6	Shigella_phage	100.0	5.3e-207
WP_001368756.1|2016593_2017922_-	DNA circularization protein	NA	Q8SBG8	Shigella_phage	98.9	1.9e-246
WP_087548872.1|2017982_2019818_-|tail	phage tail tape measure protein	tail	S5FM63	Shigella_phage	99.0	1.4e-305
WP_000661054.1|2019959_2020229_-|tail	phage tail assembly protein	tail	M1FPE4	Enterobacteria_phage	100.0	3.5e-43
WP_087548873.1|2020228_2020585_-|tail	phage tail protein	tail	U5P076	Shigella_phage	97.5	1.7e-61
WP_087548874.1|2020584_2022081_-|tail	phage tail protein	tail	U5P0H3	Shigella_phage	98.0	2.0e-273
WP_000497748.1|2022064_2022235_-	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	98.2	2.7e-25
WP_053892609.1|2022243_2022804_-	hypothetical protein	NA	Q8SBH4	Shigella_phage	98.9	1.5e-104
WP_000224835.1|2022800_2023307_-	hypothetical protein	NA	M1FPE2	Enterobacteria_phage	92.9	1.3e-83
WP_000702395.1|2023281_2023692_-|head	phage head closure protein	head	M1FJ87	Enterobacteria_phage	93.4	5.7e-69
WP_000924829.1|2023688_2024012_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q8SBH7	Shigella_phage	99.1	1.7e-52
WP_087548875.1|2024090_2025320_-|capsid	phage major capsid protein	capsid	Q8SBH8	Shigella_phage	99.0	3.8e-225
WP_000999805.1|2025330_2025933_-|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	100.0	6.8e-111
WP_000923138.1|2025925_2027152_-|portal	phage portal protein	portal	Q8SBI0	Shigella_phage	99.5	1.7e-241
WP_096859749.1|2027299_2028796_-|terminase	terminase large subunit	terminase	U5P0Q5	Shigella_phage	98.8	1.1e-290
WP_158413739.1|2029046_2029532_-|terminase	phage terminase small subunit P27 family	terminase	Q8SBI1	Shigella_phage	98.8	6.1e-86
WP_001542661.1|2029657_2030008_-	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	96.6	1.8e-63
WP_001542660.1|2030568_2030961_-	DUF2570 domain-containing protein	NA	Q8SBD9	Shigella_phage	95.4	3.5e-60
WP_087548877.1|2030944_2031421_-	glycoside hydrolase family protein	NA	Q8SBE0	Shigella_phage	98.7	6.4e-88
WP_001120498.1|2031424_2031751_-|holin	phage holin, lambda family	holin	S5FM86	Shigella_phage	98.1	3.4e-56
WP_001037093.1|2032084_2032603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001163088.1|2032608_2033493_+	DUF4868 domain-containing protein	NA	NA	NA	NA	NA
WP_001205472.1|2033514_2033862_-	antitermination protein	NA	A0A0P0ZCW0	Stx2-converting_phage	90.0	9.4e-57
WP_001434541.1|2033879_2034869_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	99.7	4.3e-195
WP_087548878.1|2034876_2035686_-	KilA-N domain-containing protein	NA	A0A291AWU7	Escherichia_phage	98.5	2.9e-149
WP_016244991.1|2035705_2036095_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0P0ZD39	Stx2-converting_phage	97.7	1.0e-67
WP_016244992.1|2036091_2036418_-	LexA repressor	NA	A0A0N7KZF7	Stx2-converting_phage	98.1	4.5e-53
WP_087548879.1|2036414_2037068_-	phage N-6-adenine-methyltransferase	NA	A0A0P0ZCC0	Stx2-converting_phage	98.6	2.4e-125
WP_016244994.1|2037067_2037562_-	PerC family transcriptional regulator	NA	A0A0P0ZCF0	Stx2-converting_phage	98.1	1.6e-86
WP_000104942.1|2037558_2038500_-	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	93.3	1.7e-140
WP_001250269.1|2038489_2038669_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	7.8e-15
WP_000515829.1|2038844_2039402_-	protein YmfL	NA	S5FXP0	Shigella_phage	96.2	1.1e-96
WP_000649477.1|2039445_2039646_-	transcriptional regulator	NA	U5P445	Shigella_phage	100.0	7.9e-32
WP_000848748.1|2039736_2040411_+	LexA family transcriptional repressor	NA	U5P0T5	Shigella_phage	100.0	1.2e-132
WP_016244996.1|2040583_2040880_+	hypothetical protein	NA	Q8SBF7	Shigella_phage	98.0	2.3e-51
WP_016244998.1|2041556_2042093_+	5'-deoxynucleotidase	NA	K7PKJ9	Enterobacteria_phage	98.3	2.4e-99
WP_016244999.1|2042083_2042446_+	hypothetical protein	NA	K7PH61	Enterobacteria_phage	95.8	2.0e-65
WP_001331173.1|2042442_2042658_+	hypothetical protein	NA	K7PLX1	Enterobacteria_phage	65.1	1.2e-14
WP_016245000.1|2042717_2042924_+	hypothetical protein	NA	I6PBM8	Cronobacter_phage	70.3	1.5e-22
WP_016243805.1|2042884_2044054_+	DUF3596 domain-containing protein	NA	I6PDJ1	Cronobacter_phage	67.3	2.3e-147
WP_087548880.1|2044086_2044776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016245002.1|2044779_2045403_-	DUF4433 domain-containing protein	NA	NA	NA	NA	NA
WP_000448925.1|2046993_2047410_+	hypothetical protein	NA	A0A1B5FPM5	Escherichia_phage	100.0	1.1e-72
WP_000214990.1|2047482_2049231_-	hypothetical protein	NA	A0A1B5FPH1	Escherichia_phage	99.8	0.0e+00
WP_000577254.1|2049232_2050951_-	ATP-binding protein	NA	A0A1B5FPD5	Escherichia_phage	99.8	3.2e-307
WP_085947771.1|2051102_2052265_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
>prophage 5
NZ_CP019560	Escherichia coli strain KSC1031 chromosome, complete genome	4707009	2123483	2130623	4707009		Escherichia_phage(85.71%)	7	NA	NA
WP_001272924.1|2123483_2126045_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.7e-30
WP_001141340.1|2126150_2126807_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	46.3	8.0e-49
WP_001297141.1|2126857_2127625_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
WP_000847985.1|2127820_2128729_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
WP_072146632.1|2128725_2129445_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	64.6	3.7e-79
WP_072146633.1|2129508_2129988_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	57.6	1.3e-40
WP_001278994.1|2129984_2130623_+	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
>prophage 6
NZ_CP019560	Escherichia coli strain KSC1031 chromosome, complete genome	4707009	4151506	4213739	4707009	protease,tRNA,transposase,plate	Emiliania_huxleyi_virus(12.5%)	50	NA	NA
WP_001325807.1|4151506_4152859_+|protease	sigma E protease regulator RseP	protease	NA	NA	NA	NA
WP_001240896.1|4152888_4155321_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_000758956.1|4155442_4155928_+	molecular chaperone Skp	NA	NA	NA	NA	NA
WP_001139282.1|4155931_4156957_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_000210739.1|4157061_4157517_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_000565967.1|4157520_4158309_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_000139659.1|4158308_4159457_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_000569430.1|4159453_4160050_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	40.0	1.0e-26
WP_001294757.1|4160086_4163569_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.9	2.2e-209
WP_000055746.1|4163581_4164541_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA	NA
WP_001020975.1|4164639_4166781_+	lysine decarboxylase LdcC	NA	NA	NA	NA	NA
WP_000901098.1|4166837_4167227_+	VOC family protein	NA	NA	NA	NA	NA
WP_000176573.1|4167291_4168590_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_000062312.1|4168638_4168899_-	Rho-binding antiterminator	NA	NA	NA	NA	NA
WP_000417058.1|4168885_4169086_-	YaeP family protein	NA	NA	NA	NA	NA
WP_001185291.1|4169251_4169797_+	YaeQ family protein	NA	NA	NA	NA	NA
WP_000635545.1|4169793_4170216_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_000239192.1|4170229_4170940_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA	NA
WP_000399648.1|4171189_4172170_+|transposase	IS110-like element IS621 family transposase	transposase	NA	NA	NA	NA
WP_001260712.1|4173249_4174968_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000094011.1|4175079_4175787_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_001202329.1|4175783_4176188_-	Rcs stress response system protein RcsF	NA	NA	NA	NA	NA
WP_000874224.1|4176305_4177121_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA	NA
WP_001294600.1|4177160_4177814_-	methionine ABC transporter permease MetI	NA	NA	NA	NA	NA
WP_000593994.1|4177806_4178838_-	methionine ABC transporter ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	40.2	7.2e-36
WP_001140174.1|4179025_4179598_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_057696613.1|4185359_4186163_+	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	36.6	2.4e-39
WP_087548919.1|4186159_4187074_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001230983.1|4187314_4188115_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_000211709.1|4188192_4188963_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000644685.1|4189010_4190369_-	murein transglycosylase D	NA	A0A2H4J9N7	uncultured_Caudovirales_phage	36.0	5.8e-09
WP_001052751.1|4190440_4191196_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_001298887.1|4191229_4191952_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000917888.1|4191948_4192416_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.7	1.0e-50
WP_001297205.1|4192480_4193212_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.0	3.4e-40
WP_001086139.1|4193751_4194537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001236643.1|4194673_4195153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000908052.1|4195162_4196077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001284199.1|4196120_4196603_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000377957.1|4196626_4197979_-	membrane protein	NA	NA	NA	NA	NA
WP_001240530.1|4201532_4202945_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_000088862.1|4202949_4203693_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
WP_087548920.1|4203689_4206491_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	30.4	2.0e-80
WP_057696615.1|4206499_4207261_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_000246437.1|4207265_4208597_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_001080149.1|4208599_4209124_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_001113725.1|4209120_4210401_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_087548921.1|4210425_4211508_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_087548922.1|4211471_4213322_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000611742.1|4213325_4213739_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
>prophage 7
NZ_CP019560	Escherichia coli strain KSC1031 chromosome, complete genome	4707009	4246081	4326005	4707009	integrase,tail,terminase,capsid,plate,portal,holin,protease,head	Shigella_phage(53.57%)	87	4248620:4248636	4306386:4306402
WP_000749881.1|4246081_4247137_-	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	60.9	7.7e-118
WP_001285288.1|4247424_4248528_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
WP_000893255.1|4248539_4249793_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	5.8e-96
4248620:4248636	attL	GCTGGAAAAAATCGCCG	NA	NA	NA	NA
WP_032178903.1|4249997_4251161_-|integrase	site-specific integrase	integrase	U5P434	Shigella_phage	99.5	3.5e-228
WP_000433939.1|4251037_4251388_-	helix-turn-helix domain-containing protein	NA	U5P4J3	Shigella_phage	100.0	4.9e-61
WP_032178904.1|4251387_4251693_-	hypothetical protein	NA	U5P0J0	Shigella_phage	99.0	1.2e-50
WP_001242749.1|4251692_4252055_-	phage protein	NA	U5P092	Shigella_phage	100.0	2.1e-67
WP_000008200.1|4252045_4252582_-	5'-deoxynucleotidase	NA	U5P0T3	Shigella_phage	100.0	4.3e-101
WP_000081269.1|4252709_4253534_-	DUF2303 family protein	NA	U5P439	Shigella_phage	99.6	6.0e-150
WP_000135680.1|4253599_4253962_-	hypothetical protein	NA	Q8SBF8	Shigella_phage	100.0	8.6e-61
WP_000159356.1|4254400_4254592_+	hypothetical protein	NA	S5FM78	Shigella_phage	100.0	3.3e-27
WP_000450735.1|4255017_4255644_-	LexA family transcriptional regulator	NA	K7PM82	Enterobacteria_phage	48.8	5.5e-47
WP_000205494.1|4255741_4255942_+	cell division protein	NA	NA	NA	NA	NA
WP_001434539.1|4255979_4256531_+	hypothetical protein	NA	S5FXP0	Shigella_phage	98.9	7.6e-101
WP_001250269.1|4256706_4256886_+	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	7.8e-15
WP_021528956.1|4256875_4257817_+	helix-turn-helix domain-containing protein	NA	S5FM81	Shigella_phage	100.0	1.5e-144
WP_001331408.1|4257813_4258308_+	PerC family transcriptional regulator	NA	A0A0P0ZCF0	Stx2-converting_phage	97.5	8.1e-86
WP_000066918.1|4258307_4258961_+	phage N-6-adenine-methyltransferase	NA	Q8SBE9	Shigella_phage	99.5	3.3e-127
WP_000210173.1|4258957_4259284_+	LexA family transcriptional regulator	NA	A0A0N7KZF7	Stx2-converting_phage	99.1	2.0e-53
WP_032178913.1|4259280_4259670_+	RusA family crossover junction endodeoxyribonuclease	NA	K7PH72	Enterobacteria_phage	98.4	3.9e-67
WP_001061380.1|4259689_4260499_+	KilA-N domain-containing protein	NA	Q8SBE6	Shigella_phage	98.9	2.8e-152
WP_024257753.1|4260506_4261496_+	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	99.1	1.1e-193
WP_032178914.1|4261509_4262262_+	antitermination protein	NA	Q8SBE4	Shigella_phage	98.8	2.0e-136
WP_000779379.1|4262476_4262746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001459463.1|4262955_4263750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001283162.1|4263858_4264245_+	membrane protein	NA	A0A192Y8P2	Salmonella_phage	99.2	9.2e-61
WP_001459465.1|4264231_4264513_+|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	45.2	4.4e-20
WP_001075799.1|4264512_4265130_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	77.9	1.4e-90
WP_016239649.1|4265126_4265663_+	DUF2514 domain-containing protein	NA	A0A0A0P0G7	Enterobacteria_phage	48.8	2.5e-08
WP_000043167.1|4265729_4266005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000219369.1|4266069_4266267_+	hypothetical protein	NA	K7PHC3	Enterobacterial_phage	95.4	6.8e-28
WP_016239647.1|4266330_4266681_+	HNH endonuclease	NA	M1FQV2	Enterobacteria_phage	80.2	3.5e-51
WP_000929173.1|4266807_4267302_+|terminase	phage terminase small subunit P27 family	terminase	Q8SBI1	Shigella_phage	100.0	1.3e-88
WP_096954127.1|4267535_4269032_+|terminase	terminase large subunit	terminase	U5P0Q5	Shigella_phage	100.0	8.8e-301
WP_032178915.1|4269043_4269226_+	hypothetical protein	NA	S5FXQ9	Shigella_phage	98.3	3.8e-25
WP_000466255.1|4269225_4270467_+|portal	phage portal protein	portal	U5P411	Shigella_phage	99.8	2.0e-242
WP_001193631.1|4270444_4271095_+|head,protease	HK97 family phage prohead protease	head,protease	U5P4H2	Shigella_phage	100.0	2.5e-119
WP_032172864.1|4271109_4272315_+|capsid	phage major capsid protein	capsid	M1FPN2	Enterobacteria_phage	99.5	1.2e-223
WP_000601356.1|4272364_4272565_+	hypothetical protein	NA	S5FNU1	Shigella_phage	95.5	2.5e-25
WP_032178917.1|4272567_4272891_+|head,tail	phage gp6-like head-tail connector protein	head,tail	S5FKK6	Shigella_phage	98.1	7.4e-56
WP_000702398.1|4272887_4273298_+|head	phage head closure protein	head	M1FJ87	Enterobacteria_phage	100.0	3.1e-75
WP_000213503.1|4273272_4273779_+	hypothetical protein	NA	M1FPE2	Enterobacteria_phage	99.4	3.2e-90
WP_024244103.1|4273775_4274336_+	hypothetical protein	NA	Q8SBH4	Shigella_phage	99.5	1.4e-105
WP_000497751.1|4274344_4274515_+	DUF2635 domain-containing protein	NA	Q8SBH3	Shigella_phage	100.0	9.3e-26
WP_021564101.1|4274498_4275995_+|tail	phage tail sheath protein	tail	M1FN90	Enterobacteria_phage	98.4	2.5e-271
WP_000090998.1|4275994_4276351_+	hypothetical protein	NA	U5P076	Shigella_phage	100.0	5.3e-63
WP_000661054.1|4276350_4276620_+|tail	phage tail assembly protein	tail	M1FPE4	Enterobacteria_phage	100.0	3.5e-43
WP_000679479.1|4278686_4279217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032178919.1|4279278_4280607_+	DNA circularization protein	NA	Q8SBG8	Shigella_phage	99.1	4.2e-246
WP_024244100.1|4280603_4281683_+|plate	baseplate protein	plate	U5P0H6	Shigella_phage	98.9	5.0e-205
WP_032178920.1|4281682_4282231_+|plate	phage baseplate assembly protein	plate	U5P081	Shigella_phage	98.4	1.9e-96
WP_000424747.1|4282230_4282656_+	hypothetical protein	NA	U5P0R9	Shigella_phage	99.3	2.0e-80
WP_032178921.1|4282642_4283701_+|plate	baseplate J/gp47 family protein	plate	U5P424	Shigella_phage	98.6	1.4e-199
WP_024244098.1|4283691_4284276_+	YmfQ family protein	NA	O22003	Shigella_phage	99.0	4.1e-113
WP_024244097.1|4284279_4285380_+	hypothetical protein	NA	U5P0I1	Shigella_phage	98.0	4.6e-49
WP_024244096.1|4285379_4285559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000943925.1|4285570_4286590_-	acyltransferase	NA	G9L6E5	Escherichia_phage	35.6	1.3e-42
WP_024244021.1|4287634_4288207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001111349.1|4288751_4289162_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_087548925.1|4289140_4290097_-	molybdenum cofactor insertion chaperone PaoD	NA	NA	NA	NA	NA
WP_000667026.1|4290106_4292305_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	A0A0P0I429	Acinetobacter_phage	25.8	2.5e-38
WP_087548926.1|4292301_4293258_-	xanthine dehydrogenase family protein subunit M	NA	NA	NA	NA	NA
WP_000070693.1|4293254_4293944_-	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_001303809.1|4295221_4295551_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_001299009.1|4295863_4296574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001265646.1|4296542_4298186_-	fimbrial adhesin EcpD	NA	NA	NA	NA	NA
WP_001131123.1|4298175_4300701_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_000716383.1|4300726_4301395_-	fimbrial chaperone EcpB	NA	NA	NA	NA	NA
WP_000730972.1|4301455_4302043_-	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA	NA
WP_001381763.1|4302117_4302660_-	ECP biosynthesis operon DNA-binding transcriptional regulator EcpR	NA	NA	NA	NA	NA
WP_000866436.1|4303743_4303884_-	50S ribosomal protein L36	NA	NA	NA	NA	NA
WP_000803998.1|4303883_4304147_-	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000662258.1|4304510_4304612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000092559.1|4305727_4309981_+	intimin-like adhesin FdeC	NA	NA	NA	NA	NA
4306386:4306402	attR	GCTGGAAAAAATCGCCG	NA	NA	NA	NA
WP_001299013.1|4310101_4310959_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001299025.1|4311207_4312077_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.7	9.3e-53
WP_001296896.1|4312236_4312830_-	reactive chlorine species resistance protein RclC	NA	NA	NA	NA	NA
WP_000474077.1|4312841_4313078_-	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_001046329.1|4313186_4314512_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	48.1	1.0e-114
WP_033557671.1|4314737_4315592_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001102119.1|4316116_4316836_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_057696413.1|4316846_4318274_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
WP_000370308.1|4318266_4318962_+	lactate utilization protein C	NA	NA	NA	NA	NA
WP_001159102.1|4320085_4321756_-|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	31.2	4.7e-61
WP_000089063.1|4321769_4323242_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001351501.1|4323255_4323843_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
WP_000131044.1|4323971_4326005_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	27.4	3.4e-21
>prophage 1
NZ_CP019561	Escherichia coli strain KSC1031 plasmid pMRGN1031, complete sequence	148529	2801	52132	148529	integrase,transposase	Bacillus_phage(28.57%)	40	43322:43339	49320:49337
WP_001067855.1|2801_3506_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001067855.1|4793_5498_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_016240422.1|5729_6107_+	RNA 3'-terminal phosphate cyclase	NA	NA	NA	NA	NA
WP_016240421.1|6149_8855_-	HTH-type transcriptional regulator MalT	NA	NA	NA	NA	NA
WP_001299729.1|9977_10187_-	hemolysin expression modulator Hha	NA	NA	NA	NA	NA
WP_158413741.1|10180_10375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087548941.1|12734_14258_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_087548942.1|16014_16431_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_001261276.1|16427_16658_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_032280099.1|16938_17199_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_071787159.1|17233_17482_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_058799199.1|17706_18141_-	copper resistance system metallochaperone PcoE	NA	NA	NA	NA	NA
WP_087548943.1|18358_19759_-	copper resistance membrane spanning protein PcoS	NA	W8CYF6	Bacillus_phage	26.3	2.1e-17
WP_001188930.1|19755_20436_-	copper response regulator transcription factor PcoR	NA	W8CYM9	Bacillus_phage	34.4	8.7e-30
WP_000998778.1|20490_21420_-	copper resistance inner membrane protein PcoD	NA	NA	NA	NA	NA
WP_000025662.1|21424_21805_-	copper resistance system metallochaperone PcoC	NA	NA	NA	NA	NA
WP_001242438.1|21844_22741_-	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA	NA
WP_001300563.1|24159_25272_+|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
WP_057107686.1|25382_25907_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_001023231.1|26141_26591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000287499.1|26865_27603_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2H4JAF5	uncultured_Caudovirales_phage	31.9	1.3e-10
WP_000843496.1|27636_27834_-	DUF2933 domain-containing protein	NA	NA	NA	NA	NA
WP_001398208.1|27874_30352_-	Ag(+)-translocating P-type ATPase SilP	NA	A0A218MNH6	uncultured_virus	35.4	2.9e-83
WP_000758221.1|30448_30889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011251357.1|30975_34122_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	S5VTK5	Leptospira_phage	22.4	1.2e-60
WP_001381488.1|34132_35425_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA	NA
WP_001246155.1|35538_35892_-	cation efflux system protein CusF	NA	NA	NA	NA	NA
WP_022630604.1|35919_37305_-	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA	NA
WP_000697965.1|37494_38175_+	copper/silver response regulator transcription factor SilR	NA	W8CYM9	Bacillus_phage	36.0	1.2e-31
WP_000555737.1|38167_39643_+	copper/silver sensor histidine kinase SilS	NA	W8CYF6	Bacillus_phage	30.1	1.0e-27
WP_000790483.1|39893_40325_+	silver-binding protein SilE	NA	NA	NA	NA	NA
WP_000694953.1|40468_40819_+	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	54.3	1.9e-20
WP_001372261.1|41206_42115_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_011251353.1|42752_43727_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA	NA
43322:43339	attL	CCGGCAGGATGCGTCGTT	NA	NA	NA	NA
WP_001375052.1|44725_45334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011251351.1|45401_46184_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	91.1	7.1e-52
WP_001323889.1|46414_47992_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	99.4	1.2e-95
WP_001161490.1|48301_48862_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	100.0	1.1e-59
WP_001138014.1|48865_51832_+|transposase	Tn3-like element TnAs1 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	100.0	0.0e+00
49320:49337	attR	AACGACGCATCCTGCCGG	NA	NA	NA	NA
WP_000844627.1|51889_52132_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP019561	Escherichia coli strain KSC1031 plasmid pMRGN1031, complete sequence	148529	57724	64310	148529		Escherichia_phage(33.33%)	7	NA	NA
WP_000633913.1|57724_58369_-	AAA family ATPase	NA	A0A222YXS3	Escherichia_phage	43.0	1.9e-39
WP_011251350.1|58597_59569_+	stable plasmid inheritance protein A	NA	A0A222YXF2	Escherichia_phage	42.9	1.3e-66
WP_000340829.1|59573_59966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011251349.1|59970_61242_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	60.5	1.4e-142
WP_000109071.1|61241_61679_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	48.4	8.3e-26
WP_000618110.1|61675_61924_-	DinI-like family protein	NA	Q2A098	Sodalis_phage	48.0	1.9e-14
WP_000086148.1|63626_64310_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	36.4	1.1e-29
>prophage 3
NZ_CP019561	Escherichia coli strain KSC1031 plasmid pMRGN1031, complete sequence	148529	77009	136394	148529	protease,transposase	Escherichia_phage(23.08%)	53	NA	NA
WP_071985540.1|77009_78065_-|transposase	IS110 family transposase	transposase	A0A1S7J231	Thermus_phage	30.4	8.7e-21
WP_000107548.1|78264_78552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001234469.1|78670_79492_+	DUF945 domain-containing protein	NA	A0A2C9CYF8	Yersinia_phage	38.2	4.4e-44
WP_000243712.1|79788_80391_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_001151524.1|80711_81095_+	relaxosome protein TraM	NA	NA	NA	NA	NA
WP_047402313.1|81281_81971_+	conjugal transfer transcriptional regulator TraJ	NA	NA	NA	NA	NA
WP_001309237.1|82069_82465_+	conjugal transfer relaxosome protein TraY	NA	NA	NA	NA	NA
WP_000994784.1|82497_82860_+	type IV conjugative transfer system pilin TraA	NA	NA	NA	NA	NA
WP_000012106.1|82864_83176_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
WP_042973370.1|83197_83764_+	type IV conjugative transfer system protein TraE	NA	NA	NA	NA	NA
WP_149010242.1|83774_84479_+	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA	NA
WP_047402310.1|84478_85906_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_000002772.1|85895_86483_+	conjugal transfer protein TraP	NA	NA	NA	NA	NA
WP_072022774.1|86421_86790_+	conjugal transfer protein TrbD	NA	NA	NA	NA	NA
WP_000724019.1|86786_87302_+	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA	NA
WP_001278692.1|87436_87658_+	conjugal transfer protein TraR	NA	A2I309	Vibrio_virus	39.4	4.4e-07
WP_001064265.1|87817_90445_+	type IV secretion system protein TraC	NA	NA	NA	NA	NA
WP_000099693.1|90441_90828_+	type-F conjugative transfer system protein TrbI	NA	NA	NA	NA	NA
WP_042047196.1|90824_91457_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_042047198.1|91453_92446_+	conjugal transfer pilus assembly protein TraU	NA	NA	NA	NA	NA
WP_042047200.1|92454_93093_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_047402305.1|93089_94898_+	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA	NA
WP_000864320.1|94924_95182_+	conjugal transfer protein TrbE	NA	NA	NA	NA	NA
WP_001030378.1|95174_95918_+	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA	NA
WP_047402303.1|95931_96273_+	conjugal transfer protein TrbA	NA	NA	NA	NA	NA
WP_000415571.1|96253_96589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000624105.1|96669_96954_+	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA	NA
WP_047402299.1|96940_97495_+	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA	NA
WP_071788165.1|97424_97799_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA	NA
WP_047402297.1|97752_98145_+	F-type conjugal transfer protein TrbF	NA	NA	NA	NA	NA
WP_047402295.1|98128_99505_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
WP_087548944.1|99501_102327_+	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA	NA
WP_000628100.1|102323_102833_+	conjugal transfer entry exclusion protein TraS	NA	NA	NA	NA	NA
WP_000850424.1|102846_103578_+	complement resistance protein TraT	NA	NA	NA	NA	NA
WP_061341537.1|103829_105983_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_047402288.1|105982_111253_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA	NA
WP_033812872.1|111272_112016_+	type-F conjugative transfer system pilin acetylase TraX	NA	A0A077JBM8	Xanthomonas_phage	30.5	6.0e-08
WP_087548945.1|112070_112631_+	fertility inhibition protein FinO	NA	NA	NA	NA	NA
WP_001233868.1|113101_113563_+	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	37.7	2.5e-20
WP_001299729.1|113608_113818_+	hemolysin expression modulator Hha	NA	NA	NA	NA	NA
WP_000766807.1|113855_114446_+	DUF2726 domain-containing protein	NA	NA	NA	NA	NA
WP_000083830.1|114685_114940_+	replication regulatory protein RepA	NA	NA	NA	NA	NA
WP_001365705.1|115177_115252_+	RepA leader peptide Tap	NA	NA	NA	NA	NA
WP_000130646.1|115244_116102_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
WP_001132900.1|117066_117318_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_000222766.1|117314_117602_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	50.5	5.8e-20
WP_087548946.1|117676_118950_-|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.0e-177
WP_087548947.1|119206_120420_-|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	96.3	1.4e-163
WP_001045657.1|121045_124948_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	Q9LA58	Enterobacterial_phage	38.5	1.4e-220
WP_001254932.1|125572_126724_-|transposase	IS30-like element IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.6	2.0e-42
WP_087548948.1|127689_131823_+|protease	temperature-sensitive protease autotransporter hemagglutinin Tsh	protease	Q9LA54	Enterobacteria_phage	41.8	3.6e-296
WP_001317493.1|134592_135375_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
WP_042048531.1|135371_136394_-|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.1	6.0e-200
