assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002163895.1_ASM216389v1	NZ_CP019047	Klebsiella pneumoniae subsp. pneumoniae strain RJA166 chromosome, complete genome	1	1444906-1444995	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	Orphan	AAGCTGCAGGCTGACCTCGACGAGGCT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA|172aa|up_7|NZ_CP019047.1_1437095_1437611_+,NA|491aa|up_6|NZ_CP019047.1_1437610_1439083_+,NA|91aa|up_3|NZ_CP019047.1_1441525_1441798_+,NA|460aa|up_2|NZ_CP019047.1_1441850_1443230_+,NA|145aa|up_1|NZ_CP019047.1_1443229_1443664_+,NA|127aa|down_0|NZ_CP019047.1_1445036_1445417_+,NA|58aa|down_1|NZ_CP019047.1_1445416_1445590_+,NA|121aa|down_2|NZ_CP019047.1_1445589_1445952_+,NA|142aa|down_3|NZ_CP019047.1_1445954_1446380_+,NA|131aa|down_4|NZ_CP019047.1_1446376_1446769_+,NA|226aa|down_6|NZ_CP019047.1_1447642_1448320_+,NA|85aa|down_8|NZ_CP019047.1_1449253_1449508_+,NA|107aa|down_9|NZ_CP019047.1_1449928_1450249_+	NA|102aa|up_9|NZ_CP019047.1_1436096_1436402_+	pfam16083, Phage_holin_3_3, LydA holin phage, holin superfamily III	NA|150aa|up_8|NZ_CP019047.1_1436388_1436838_+	cd00737, lyz_endolysin_autolysin, endolysin and autolysin	NA|172aa|up_7|NZ_CP019047.1_1437095_1437611_+	NA	NA|491aa|up_6|NZ_CP019047.1_1437610_1439083_+	NA	NA|490aa|up_5|NZ_CP019047.1_1439095_1440565_+	pfam06381, DUF1073, Protein of unknown function (DUF1073)	NA|336aa|up_4|NZ_CP019047.1_1440491_1441499_+	TIGR01641, Uncharacterized_protein_MJ0329, phage putative head morphogenesis protein, SPP1 gp7 family	NA|91aa|up_3|NZ_CP019047.1_1441525_1441798_+	NA	NA|460aa|up_2|NZ_CP019047.1_1441850_1443230_+	NA	NA|145aa|up_1|NZ_CP019047.1_1443229_1443664_+	NA	NA|344aa|up_0|NZ_CP019047.1_1443675_1444707_+	pfam09950, DUF2184, Uncharacterized protein conserved in bacteria (DUF2184)	NA|127aa|down_0|NZ_CP019047.1_1445036_1445417_+	NA	NA|58aa|down_1|NZ_CP019047.1_1445416_1445590_+	NA	NA|121aa|down_2|NZ_CP019047.1_1445589_1445952_+	NA	NA|142aa|down_3|NZ_CP019047.1_1445954_1446380_+	NA	NA|131aa|down_4|NZ_CP019047.1_1446376_1446769_+	NA	NA|251aa|down_5|NZ_CP019047.1_1446837_1447590_+	COG5492, COG5492, Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	NA|226aa|down_6|NZ_CP019047.1_1447642_1448320_+	NA	NA|252aa|down_7|NZ_CP019047.1_1448495_1449251_+	pfam04383, KilA-N, KilA-N domain	NA|85aa|down_8|NZ_CP019047.1_1449253_1449508_+	NA	NA|107aa|down_9|NZ_CP019047.1_1449928_1450249_+	NA
GCF_002163895.1_ASM216389v1	NZ_CP019047	Klebsiella pneumoniae subsp. pneumoniae strain RJA166 chromosome, complete genome	2	2255536-2256052	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	Type I-E	GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	5,8,8	8	TypeI-E	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA,NA	NA|131aa|up_9|NZ_CP019047.1_2242035_2242428_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|up_8|NZ_CP019047.1_2242464_2243697_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_7|NZ_CP019047.1_2244262_2244697_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_6|NZ_CP019047.1_2244813_2246013_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|386aa|up_5|NZ_CP019047.1_2246308_2247466_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_4|NZ_CP019047.1_2247508_2249659_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_3|NZ_CP019047.1_2249906_2250986_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|363aa|up_2|NZ_CP019047.1_2251288_2252377_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NZ_CP019047.1_2252450_2254220_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP019047.1_2254212_2255283_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NZ_CP019047.1_2256464_2259080_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NZ_CP019047.1_2259083_2260607_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NZ_CP019047.1_2260618_2261185_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NZ_CP019047.1_2261177_2261825_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_4|NZ_CP019047.1_2261854_2262889_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|down_5|NZ_CP019047.1_2262922_2263618_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_6|NZ_CP019047.1_2263617_2264493_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_7|NZ_CP019047.1_2264470_2264758_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_8|NZ_CP019047.1_2267023_2268139_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_9|NZ_CP019047.1_2268149_2268833_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)
GCF_002163895.1_ASM216389v1	NZ_CP019047	Klebsiella pneumoniae subsp. pneumoniae strain RJA166 chromosome, complete genome	3	2264806-2266785	2,3,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC	28,28,28,28	1	1	2265444-2265476	NZ_CP019047.1_1457751-1457783	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	30,32,32,30	32	TypeI-E	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA,NA	NA|590aa|up_9|NZ_CP019047.1_2252450_2254220_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NZ_CP019047.1_2254212_2255283_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_7|NZ_CP019047.1_2256464_2259080_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_CP019047.1_2259083_2260607_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|NZ_CP019047.1_2260618_2261185_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|NZ_CP019047.1_2261177_2261825_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|NZ_CP019047.1_2261854_2262889_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|up_2|NZ_CP019047.1_2262922_2263618_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|NZ_CP019047.1_2263617_2264493_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_CP019047.1_2264470_2264758_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NZ_CP019047.1_2267023_2268139_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_1|NZ_CP019047.1_2268149_2268833_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|NZ_CP019047.1_2268893_2269265_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|251aa|down_3|NZ_CP019047.1_2269769_2270522_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|NZ_CP019047.1_2270524_2272309_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|446aa|down_5|NZ_CP019047.1_2272322_2273660_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|NZ_CP019047.1_2273743_2274367_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|NZ_CP019047.1_2274363_2275023_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|NZ_CP019047.1_2275072_2275810_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|NZ_CP019047.1_2275806_2276037_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_002163895.1_ASM216389v1	NZ_CP019047	Klebsiella pneumoniae subsp. pneumoniae strain RJA166 chromosome, complete genome	4	4250397-4250536	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	Unclear	TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG	50	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA,NA	NA|428aa|up_9|NZ_CP019047.1_4240145_4241429_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|NZ_CP019047.1_4241564_4242965_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|NZ_CP019047.1_4243010_4243703_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|NZ_CP019047.1_4243788_4244187_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_CP019047.1_4244244_4245489_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_CP019047.1_4245594_4246053_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_CP019047.1_4246310_4247768_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NZ_CP019047.1_4247810_4248263_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_CP019047.1_4248265_4249321_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_CP019047.1_4249480_4250341_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_CP019047.1_4250563_4250779_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_CP019047.1_4250781_4252005_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_CP019047.1_4252017_4252614_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_CP019047.1_4252620_4253259_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_CP019047.1_4253251_4254046_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_CP019047.1_4254038_4255277_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_CP019047.1_4255280_4256624_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_CP019047.1_4257035_4257776_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_CP019047.1_4257746_4258514_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_CP019047.1_4258588_4259170_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
GCF_002163895.1_ASM216389v1	NZ_CP019048	Klebsiella pneumoniae subsp. pneumoniae strain RJA166 plasmid pRJA166a, complete sequence	1	227149-227336	1	PILER-CR	no			Orphan	TGGGCGTCAAGGGGCCGGACTGCGAACAAGGGGGTTGTTTTGCCCTGCCGGGTT	54	2	3	227203-227215|227203-227215|227270-227282	NZ_CP019048.1_222502-222514|NZ_CP019048.1_222904-222916|NZ_CP019050.1_5440-5452	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL,RT	NA|240aa|up_9|NZ_CP019048.1_210372_211092_-,NA|118aa|up_8|NZ_CP019048.1_211126_211480_-,NA|139aa|up_7|NZ_CP019048.1_212036_212453_+,NA|342aa|up_2|NZ_CP019048.1_221206_222232_-,NA	NA|240aa|up_9|NZ_CP019048.1_210372_211092_-	NA	NA|118aa|up_8|NZ_CP019048.1_211126_211480_-	NA	NA|139aa|up_7|NZ_CP019048.1_212036_212453_+	NA	NA|226aa|up_6|NZ_CP019048.1_212589_213267_+	cd18723, PIN_LabA-like, uncharacterized subfamily of the LabA-like PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|802aa|up_5|NZ_CP019048.1_213411_215817_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|802aa|up_4|NZ_CP019048.1_215950_218356_+	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3)	NA|801aa|up_3|NZ_CP019048.1_218494_220897_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|342aa|up_2|NZ_CP019048.1_221206_222232_-	NA	NA|337aa|up_1|NZ_CP019048.1_223149_224160_-	cd16394, sopB_N, N-terminal domain of sopB protein, which promotes proper partitioning of F1 plasmid	NA|416aa|up_0|NZ_CP019048.1_224159_225407_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|337aa|down_0|NZ_CP019048.1_227448_228459_-	cd16394, sopB_N, N-terminal domain of sopB protein, which promotes proper partitioning of F1 plasmid	NA|416aa|down_1|NZ_CP019048.1_228458_229706_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
