The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018840	Escherichia coli strain KSC64 chromosome, complete genome	4759716	368645	470182	4759716	integrase,protease,tRNA,holin,portal,tail,lysis	Enterobacteria_phage(47.46%)	106	429402:429417	470971:470986
WP_001297411.1|368645_369383_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219196.1|369514_370849_+	ATP-dependent RNA helicase SrmB	NA	E3T5E1	Cafeteria_roenbergensis_virus	30.8	2.9e-45
WP_001297408.1|370881_371763_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000189206.1|371865_372453_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627807.1|372507_372891_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	72.0	1.4e-32
WP_001262723.1|373195_373885_+	uracil-DNA glycosylase	NA	A0A077BCN4	Equid_alphaherpesvirus	52.1	2.1e-55
WP_087514499.1|373932_374970_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001098726.1|375176_375596_+	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	38.5	2.8e-15
WP_001298975.1|375664_376363_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_000083007.1|376394_379055_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_000949265.1|379168_380524_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001378313.1|380567_380891_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_000841103.1|380887_382186_-	alpha-ketoglutarate permease	NA	Q6JIH2	Burkholderia_virus	32.2	1.3e-45
WP_001235102.1|388042_390616_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.3	2.6e-127
WP_000040115.1|390745_391477_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079107.1|391473_392454_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197686.1|392588_393326_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178456.1|393596_393938_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_001386991.1|394041_394089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200116.1|394187_395348_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000225221.1|395390_396512_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168054.1|396522_397593_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.2	5.3e-90
WP_000976004.1|397802_398168_+	DUF2799 domain-containing protein	NA	NA	NA	NA	NA
WP_001212391.1|398317_398836_+	YfiR family protein	NA	NA	NA	NA	NA
WP_000969032.1|398825_400052_+	diguanylate cyclase DgcN	NA	NA	NA	NA	NA
WP_000589828.1|400067_400550_+	OmpA family protein	NA	NA	NA	NA	NA
WP_000065253.1|400626_400974_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000264777.1|401015_401783_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043335.1|401813_402362_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256450.1|402380_402629_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460035.1|402765_404127_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001338897.1|404293_405085_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_010723175.1|405105_406392_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_087514500.1|406514_407072_+	cytoplasmic protein	NA	NA	NA	NA	NA
WP_001300112.1|407153_407744_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_087514501.1|407866_408745_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_047086987.1|408830_410492_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203437.1|410640_410982_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001117838.1|411043_411334_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000600190.1|411323_411800_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA	NA
WP_000162574.1|411931_412414_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	46.8	4.0e-29
WP_000429347.1|413291_413561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000461705.1|413698_414061_-	type II toxin-antitoxin system RnlB family antitoxin	NA	NA	NA	NA	NA
WP_024190590.1|414053_415124_-	type II toxin-antitoxin system RnlA family toxin	NA	NA	NA	NA	NA
WP_001597763.1|415183_415339_-	hypothetical protein	NA	A0A1S6L009	Salmonella_phage	92.6	2.2e-05
WP_023363231.1|415524_416109_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	95.4	5.0e-103
WP_087514502.1|416108_419135_-|tail	phage tail protein	tail	U5N099	Enterobacteria_phage	80.7	6.1e-67
WP_001230356.1|419199_419799_-	Ail/Lom family outer membrane beta-barrel protein	NA	A0A291AWV3	Escherichia_phage	99.0	1.8e-111
WP_087514503.1|419865_423264_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	90.7	0.0e+00
WP_063112473.1|423324_423933_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	96.5	2.4e-103
WP_063112472.1|423869_424613_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	98.0	7.7e-149
WP_063112471.1|424617_425316_-|tail	phage minor tail protein L	tail	A5LH40	Enterobacteria_phage	99.1	1.5e-133
WP_000447253.1|425325_425655_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	100.0	1.7e-60
WP_087514504.1|425654_428720_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	97.6	0.0e+00
WP_001161009.1|428691_429021_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	100.0	7.6e-56
WP_001300035.1|429029_429416_-|tail	phage minor tail protein G	tail	A0A291AWW5	Escherichia_phage	100.0	1.6e-65
429402:429417	attL	CTGTTTCAGAAACATC	NA	NA	NA	NA
WP_021560209.1|429476_430220_-|tail	phage tail protein	tail	A5LH35	Enterobacteria_phage	99.2	2.3e-132
WP_001079419.1|430230_430632_-|tail	tail protein	tail	A5LH34	Enterobacteria_phage	99.2	1.9e-72
WP_000677112.1|430628_431207_-|tail	phage tail protein	tail	A0A291AWZ0	Escherichia_phage	99.5	9.4e-102
WP_001283153.1|431218_431494_-	DNA breaking-rejoining protein	NA	K7PH43	Enterobacteria_phage	100.0	2.3e-45
WP_001097045.1|431486_431810_-	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	100.0	8.5e-52
WP_087514505.1|431896_433924_-|protease	Clp protease ClpP	protease	A5LH30	Enterobacteria_phage	99.5	0.0e+00
WP_077625506.1|433868_435449_-|portal	phage portal protein	portal	A5LH29	Enterobacteria_phage	99.6	2.1e-289
WP_032193109.1|435376_435589_-	hypothetical protein	NA	A5LH28	Enterobacteria_phage	97.1	3.5e-30
WP_042016571.1|437072_437354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069354209.1|437356_437842_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	66.9	6.6e-48
WP_077134852.1|438883_440797_-|protease	Clp protease ClpP	protease	S5M7Q8	Escherichia_phage	57.4	7.2e-215
WP_001475270.1|440889_441063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000126661.1|441427_441850_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_000125509.1|441846_442092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000710150.1|442379_444197_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	50.7	1.5e-129
WP_001261491.1|444193_444493_-	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
WP_001113146.1|444499_444820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074465662.1|444812_445748_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
WP_042017548.1|445728_446310_-	antirepressor protein	NA	A0A1W6JPH8	Morganella_phage	60.7	2.0e-51
WP_001095275.1|446369_446573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042017551.1|446585_447824_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	35.0	2.4e-62
WP_000373425.1|448980_449475_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	100.0	9.9e-84
WP_032259466.1|450150_450303_-	hypothetical protein	NA	K7PKL2	Enterobacteria_phage	98.0	3.6e-21
WP_097318462.1|450290_450752_-|lysis	lysis protein	lysis	K7P6Y5	Enterobacteria_phage	90.8	2.6e-70
WP_032235545.1|450748_451363_-	glycoside hydrolase family 19 protein	NA	A0A192Y6G4	Salmonella_phage	99.0	3.7e-112
WP_000422366.1|451362_451644_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	45.2	9.7e-20
WP_001673688.1|451630_452017_-	hypothetical protein	NA	A0A192Y8P2	Salmonella_phage	89.1	2.7e-52
WP_000275196.1|452110_452896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001075730.1|453089_453779_-	antitermination protein	NA	NA	NA	NA	NA
WP_032235544.1|453800_454796_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	98.8	2.8e-194
WP_024219727.1|454803_455613_-	KilA-N domain-containing protein	NA	A5LH75	Enterobacteria_phage	99.6	2.4e-151
WP_087514507.1|455632_456022_-	RusA family crossover junction endodeoxyribonuclease	NA	Q8SBE7	Shigella_phage	98.4	6.0e-68
WP_023363277.1|456018_456345_-	LexA family transcriptional regulator	NA	A5LH73	Enterobacteria_phage	99.1	3.5e-53
WP_000066917.1|456341_456995_-	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	99.5	1.9e-127
WP_023363280.1|456994_457483_-	PerC family transcriptional regulator	NA	A0A0P0ZCF0	Stx2-converting_phage	97.5	2.0e-84
WP_000620696.1|458298_458523_-	hypothetical protein	NA	A5LH70	Enterobacteria_phage	100.0	5.7e-39
WP_001087357.1|458519_459671_-	peptidase	NA	A0A0P0ZE80	Stx2-converting_phage	97.4	1.1e-210
WP_000515841.1|459667_460219_-	hypothetical protein	NA	K7PGU3	Enterobacteria_phage	98.4	4.9e-100
WP_001191669.1|460211_460472_-	helix-turn-helix transcriptional regulator	NA	K7PJQ8	Enterobacteria_phage	100.0	5.4e-41
WP_001311077.1|460569_461262_+	helix-turn-helix transcriptional regulator	NA	S5FUZ3	Shigella_phage	96.5	2.9e-121
WP_000135680.1|461984_462347_+	hypothetical protein	NA	Q8SBF8	Shigella_phage	100.0	8.6e-61
WP_023277820.1|462412_463237_+	DUF2303 family protein	NA	U5P439	Shigella_phage	99.3	4.3e-148
WP_023363286.1|463365_463902_+	5'-deoxynucleotidase	NA	U5P0T3	Shigella_phage	98.9	4.1e-99
WP_087514508.1|463892_464255_+	hypothetical protein	NA	K7PH61	Enterobacteria_phage	96.7	7.5e-65
WP_087514509.1|464251_464467_+	hypothetical protein	NA	K7PLX1	Enterobacteria_phage	63.5	1.8e-13
WP_001331174.1|464526_464733_+	hypothetical protein	NA	I6PBM8	Cronobacter_phage	70.3	6.9e-23
WP_001596854.1|464693_465860_+	DUF3596 domain-containing protein	NA	I6PDJ1	Cronobacter_phage	67.2	1.8e-147
WP_001596855.1|465918_467652_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_023363292.1|467731_468631_+	DNA adenine methylase	NA	A0A0C5AMX6	Cyanophage	23.2	2.5e-08
WP_000113815.1|468940_470182_+|integrase	integrase	integrase	A0A1B5FPC6	Escherichia_phage	47.3	4.5e-101
470971:470986	attR	CTGTTTCAGAAACATC	NA	NA	NA	NA
>prophage 2
NZ_CP018840	Escherichia coli strain KSC64 chromosome, complete genome	4759716	558078	565218	4759716		Escherichia_phage(83.33%)	6	NA	NA
WP_087514512.1|558078_560640_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	1.3e-30
WP_001141330.1|560745_561402_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	46.7	4.3e-50
WP_001297141.1|561452_562220_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	3.3e-70
WP_000847985.1|562415_563324_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.9	3.0e-118
WP_000590392.1|563320_564583_+	3-oxo-tetronate kinase	NA	A0A077SLJ7	Escherichia_phage	61.4	1.3e-135
WP_087514513.1|564579_565218_+	aldolase	NA	A0A077SK32	Escherichia_phage	74.5	4.1e-82
>prophage 3
NZ_CP018840	Escherichia coli strain KSC64 chromosome, complete genome	4759716	2930868	2990440	4759716	protease,tRNA,lysis,tail	Enterobacteria_phage(47.62%)	52	NA	NA
WP_001295836.1|2930868_2931492_-|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	protease	NA	NA	NA	NA
WP_001110573.1|2931462_2932149_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.6	2.9e-33
WP_000561845.1|2932145_2934560_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001158001.1|2940674_2941769_-|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_087514589.1|2941837_2942764_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA	NA
WP_000776392.1|2942993_2943476_+	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_000141275.1|2943553_2944369_+	HTH-type transcriptional repressor AllR	NA	NA	NA	NA	NA
WP_001096881.1|2944458_2946240_+	glyoxylate carboligase	NA	E4WLQ6	Ostreococcus_tauri_virus	27.0	3.5e-38
WP_000943556.1|2946252_2947029_+	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
WP_000765839.1|2947128_2948007_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA	NA
WP_000401133.1|2948174_2949629_+	putative allantoin permease	NA	NA	NA	NA	NA
WP_000006890.1|2949688_2951050_+	allantoinase AllB	NA	NA	NA	NA	NA
WP_001298987.1|2951106_2952408_+	uracil/xanthine transporter	NA	NA	NA	NA	NA
WP_000706355.1|2952429_2953575_+	glycerate 3-kinase	NA	W6LM47	Streptococcus_phage	41.9	1.8e-48
WP_000540946.1|2953702_2954488_-	(S)-ureidoglycine aminohydrolase	NA	NA	NA	NA	NA
WP_001377891.1|2954498_2955734_-	allantoate deiminase	NA	NA	NA	NA	NA
WP_000703894.1|2955755_2956805_-	ureidoglycolate dehydrogenase	NA	NA	NA	NA	NA
WP_000580834.1|2957121_2958789_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA	NA
WP_000495408.1|2958798_2960058_+	DUF1116 domain-containing protein	NA	NA	NA	NA	NA
WP_001298986.1|2960068_2960884_+	DUF2877 domain-containing protein	NA	NA	NA	NA	NA
WP_000855355.1|2960880_2961774_+	carbamate kinase	NA	NA	NA	NA	NA
WP_000815553.1|2961910_2962978_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001377893.1|2962974_2963484_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA	NA
WP_000212252.1|2963601_2964324_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_000256002.1|2964326_2964821_-	peptidylprolyl isomerase B	NA	NA	NA	NA	NA
WP_000912345.1|2964994_2966380_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	34.8	3.9e-45
WP_001143552.1|2966415_2966937_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000190288.1|2967044_2967257_-	ribosome-associated protein YbcJ	NA	NA	NA	NA	NA
WP_000729160.1|2967258_2968125_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.5	1.7e-30
WP_000776555.1|2968604_2969147_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA	NA
WP_087514590.1|2969366_2970059_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA	NA
WP_087514591.1|2972709_2973717_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA	NA
WP_001250422.1|2973727_2974243_+	fimbria assembly protein	NA	NA	NA	NA	NA
WP_000805428.1|2974245_2974878_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA	NA
WP_001242707.1|2976357_2976720_-	phage protein	NA	K7PH61	Enterobacteria_phage	98.3	4.4e-65
WP_001204780.1|2976935_2977319_+	antitermination protein QuuD	NA	A0A088CD47	Shigella_phage	84.2	4.0e-56
WP_000737283.1|2977508_2978606_-	porin	NA	Q1MVN1	Enterobacteria_phage	76.3	4.8e-155
WP_000670959.1|2979194_2979410_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	98.6	3.4e-33
WP_001135281.1|2979409_2979907_+	lysozyme	NA	M1FJA0	Enterobacteria_phage	98.2	1.1e-90
WP_001228697.1|2980123_2980306_+|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	78.3	1.4e-16
WP_000738500.1|2980396_2980690_-	serum resistance lipoprotein Bor	NA	A0A2R2X2B2	Escherichia_phage	97.9	5.7e-47
WP_001298896.1|2980980_2981391_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	98.5	2.7e-71
WP_001031427.1|2981676_2981883_+	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	100.0	5.8e-30
WP_001301720.1|2982047_2982182_-	DUF3950 domain-containing protein	NA	A0A0K2FIR8	Escherichia_phage	97.7	1.1e-16
WP_001414729.1|2982251_2984240_+	membrane protein	NA	X2KTY7	Enterobacteria_phage	58.0	7.8e-188
WP_050877076.1|2984239_2984815_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	93.7	6.1e-101
WP_000087133.1|2984912_2985503_-	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	35.9	2.1e-24
WP_000836763.1|2985821_2986055_-	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	85.7	7.0e-32
WP_120795384.1|2986123_2986237_-	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_000239881.1|2986602_2987271_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000937502.1|2987327_2987633_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	76.5	2.8e-12
WP_001201825.1|2989486_2990440_-|protease	omptin family outer membrane protease OmpT	protease	NA	NA	NA	NA
>prophage 4
NZ_CP018840	Escherichia coli strain KSC64 chromosome, complete genome	4759716	3297130	3307285	4759716	integrase,tail	Salmonella_phage(72.73%)	13	3293927:3293940	3304191:3304204
3293927:3293940	attL	TATCTTTTTAAAAG	NA	NA	NA	NA
WP_000290937.1|3297130_3298183_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	57.3	3.6e-107
WP_001513672.1|3298371_3298563_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	65.9	6.8e-09
WP_001047320.1|3298578_3299148_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.9	2.9e-39
WP_001247707.1|3299273_3299495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460891.1|3299527_3300037_+	phage regulatory CII family protein	NA	E5G6L3	Salmonella_phage	98.2	1.3e-86
WP_001504054.1|3300044_3300245_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	95.5	4.6e-32
WP_001504055.1|3300208_3300550_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	97.3	5.1e-55
WP_001504056.1|3300617_3300851_+	DUF2732 family protein	NA	E5G6L6	Salmonella_phage	96.1	7.0e-32
WP_000752610.1|3300850_3301078_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	98.7	7.8e-36
WP_087514598.1|3301074_3301854_+	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	95.7	8.1e-141
WP_087514599.1|3302880_3303294_+|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	51.6	1.6e-26
WP_087514600.1|3303337_3304477_-	acyltransferase	NA	NA	NA	NA	NA
3304191:3304204	attR	TATCTTTTTAAAAG	NA	NA	NA	NA
WP_001011797.1|3306184_3307285_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	88.0	1.7e-176
>prophage 5
NZ_CP018840	Escherichia coli strain KSC64 chromosome, complete genome	4759716	3436428	3493071	4759716	protease,integrase,terminase,tail	Salmonella_phage(40.91%)	62	3454102:3454116	3483266:3483280
WP_000156526.1|3436428_3438189_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877161.1|3438374_3438827_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000750416.1|3438902_3439943_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288710.1|3440298_3440808_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_000839153.1|3441026_3441656_+	CRP-S regulon transcriptional coactivator Sxy	NA	NA	NA	NA	NA
WP_000875044.1|3441618_3443781_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261231.1|3443790_3444237_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_001377983.1|3444359_3446414_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.9	1.0e-20
WP_000424181.1|3446445_3446904_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847791.1|3446999_3447662_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000665217.1|3447834_3448248_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_001295356.1|3448292_3448610_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000116288.1|3448667_3449858_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000048250.1|3449952_3450231_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904442.1|3450227_3450557_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000375136.1|3450647_3451307_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	55.3	4.0e-48
WP_001058323.1|3452027_3453146_+	hydrogenase 1 small subunit	NA	NA	NA	NA	NA
WP_000107384.1|3453142_3454936_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA	NA
3454102:3454116	attL	GATGCCTGGCGGCGC	NA	NA	NA	NA
WP_001186424.1|3454954_3455662_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA	NA
WP_000003671.1|3455658_3456246_+|protease	hydrogenase 1 maturation protease	protease	NA	NA	NA	NA
WP_000063978.1|3456242_3456641_+	hydrogenase-1 operon protein HyaE	NA	NA	NA	NA	NA
WP_000004904.1|3456637_3457495_+	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
WP_000263563.1|3457628_3459173_+	cytochrome bd-II oxidase subunit 1	NA	NA	NA	NA	NA
WP_087514602.1|3459184_3460321_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_000270305.1|3460333_3460426_+	cytochrome bd-II oxidase subunit CbdX	NA	NA	NA	NA	NA
WP_001300464.1|3460505_3461804_+	AppA family phytase/histidine-type acid phosphatase	NA	NA	NA	NA	NA
WP_000057871.1|3464117_3464564_-	protein-tyrosine-phosphatase Etp	NA	NA	NA	NA	NA
WP_001295357.1|3464551_3465691_-	polysaccharide export protein	NA	NA	NA	NA	NA
WP_000742348.1|3465736_3467833_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_001038062.1|3467832_3468579_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_001247610.1|3468575_3469220_-	lipoprotein GfcB	NA	NA	NA	NA	NA
WP_001295358.1|3469326_3469632_-	threonine-rich inner membrane protein GfcA	NA	NA	NA	NA	NA
WP_000087763.1|3470074_3470287_-	cold shock-like protein CspH	NA	NA	NA	NA	NA
WP_000066490.1|3470572_3470785_+	cold shock protein CspG	NA	A0A1W6JNX5	Morganella_phage	71.4	7.8e-22
WP_071524879.1|3470795_3470984_+	cold-shock protein	NA	NA	NA	NA	NA
WP_001316982.1|3470958_3471189_+	protein YmcE	NA	NA	NA	NA	NA
WP_001019197.1|3471178_3471352_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
WP_000829668.1|3471399_3472473_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_001307096.1|3472544_3475289_-	TMAO reductase system sensor histidine kinase/response regulator TorS	NA	A0A1V0SGX0	Hokovirus	31.9	1.0e-36
WP_000533666.1|3475383_3476457_-|integrase	tyrosine-type recombinase/integrase	integrase	Q9G075	Enterobacteria_phage	98.9	1.5e-198
WP_001303849.1|3476434_3476653_-	excisionase	NA	Q77WA4	Escherichia_phage	100.0	3.7e-35
WP_000545745.1|3476692_3476860_-	hypothetical protein	NA	A5VWB7	Enterobacteria_phage	98.2	2.9e-27
WP_087514603.1|3476948_3477491_-	DUF2528 family protein	NA	M1FPD2	Enterobacteria_phage	99.1	5.6e-56
WP_000213975.1|3477673_3477874_-	Restriction inhibitor protein ral	NA	A0A0K2FJE6	Enterobacteria_phage	100.0	1.4e-33
WP_087514604.1|3477952_3478330_-	antitermination protein	NA	A4KWR0	Enterobacteria_phage	99.1	6.9e-53
WP_087514605.1|3478736_3479144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042343393.1|3479460_3479733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087514606.1|3479757_3480309_+|terminase	terminase small subunit	terminase	G0ZND3	Cronobacter_phage	69.2	1.2e-66
WP_087514607.1|3480311_3481934_+	TerL protein	NA	A0A0M5M1R6	Salmonella_phage	95.7	0.0e+00
WP_087514608.1|3481933_3483400_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	92.4	3.9e-261
3483266:3483280	attR	GCGCCGCCAGGCATC	NA	NA	NA	NA
WP_021580217.1|3483874_3484177_+	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	91.0	1.1e-48
WP_087514609.1|3484179_3485244_+	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	81.6	1.3e-157
WP_140394813.1|3485246_3485711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087514611.1|3486096_3486669_+	DUF2335 domain-containing protein	NA	NA	NA	NA	NA
WP_087514612.1|3486726_3487479_+	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	65.9	3.5e-88
WP_001270634.1|3487478_3487832_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	90.6	3.1e-55
WP_052905985.1|3487831_3489031_+	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	83.4	1.4e-184
WP_087514613.1|3489027_3489708_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	78.8	1.5e-103
WP_087514614.1|3489707_3490607_+	hypothetical protein	NA	A0A0M3ULD8	Salmonella_phage	72.5	1.5e-61
WP_024249821.1|3490609_3491026_+|tail	tail fiber assembly protein	tail	B6SCW7	Bacteriophage	45.2	7.7e-21
WP_001264955.1|3491377_3492406_+	TMAO reductase system periplasmic protein TorT	NA	NA	NA	NA	NA
WP_001120112.1|3492378_3493071_-	two-component system response regulator TorR	NA	W8CYM9	Bacillus_phage	28.0	4.5e-18
>prophage 6
NZ_CP018840	Escherichia coli strain KSC64 chromosome, complete genome	4759716	3529281	3556152	4759716	transposase,capsid,portal,tail,terminase	Acinetobacter_phage(25.0%)	27	NA	NA
WP_085947771.1|3529281_3530444_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
WP_000627403.1|3530546_3531038_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_000611858.1|3531034_3532021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087514617.1|3532896_3533835_+	glyoxylate/hydroxypyruvate reductase GhrA	NA	NA	NA	NA	NA
WP_000849925.1|3534377_3534683_-	hypothetical protein	NA	C4MZ33	Escherichia_phage	59.8	1.0e-22
WP_087514618.1|3534982_3535537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000190126.1|3535631_3535916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087514619.1|3536189_3537131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000113736.1|3537243_3537426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611125.1|3538815_3539268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657811.1|3539388_3539721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087514620.1|3539817_3540648_+	hypothetical protein	NA	K4IBS6	Acinetobacter_phage	41.5	1.8e-13
WP_087514621.1|3540823_3541051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000906789.1|3541085_3541688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087514622.1|3541773_3543678_+|terminase	terminase	terminase	A0A2H4J898	uncultured_Caudovirales_phage	27.2	1.0e-43
WP_087514623.1|3543750_3544245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069722506.1|3544255_3545767_+|portal	phage portal protein	portal	K4I1F2	Acidithiobacillus_phage	28.1	2.4e-32
WP_087514624.1|3545812_3547822_+|capsid	major capsid protein	capsid	G8EXZ9	Synechococcus_phage	24.3	3.1e-27
WP_053919337.1|3548019_3548310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000881569.1|3548293_3548716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087514625.1|3548725_3549559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087514626.1|3549632_3553154_+|tail	phage tail protein	tail	A0A097J6T2	Enterobacteria_phage	44.9	5.0e-04
WP_087514627.1|3553192_3553489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087514628.1|3553491_3553797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158293142.1|3553796_3554099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032318729.1|3554153_3554627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001352368.1|3554943_3556152_-|transposase	IS4-like element ISVsa5 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	100.0	1.8e-235
>prophage 7
NZ_CP018840	Escherichia coli strain KSC64 chromosome, complete genome	4759716	4448749	4523493	4759716	transposase	Escherichia_phage(30.77%)	60	NA	NA
WP_001352368.1|4448749_4449958_+|transposase	IS4-like element ISVsa5 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	100.0	1.8e-235
WP_101924636.1|4449980_4450466_+	porin	NA	Q1MVN1	Enterobacteria_phage	40.9	9.9e-28
WP_001254932.1|4450787_4451939_-|transposase	IS30-like element IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.6	2.0e-42
WP_000218212.1|4453408_4454260_+	protein deglycase HchA	NA	NA	NA	NA	NA
WP_000826790.1|4454357_4455716_-	two-component system sensor histidine kinase HprS	NA	Q8QKV7	Ectocarpus_siliculosus_virus	20.5	2.3e-05
WP_001339045.1|4455715_4456387_-	response regulator transcription factor HprR	NA	W8CYM9	Bacillus_phage	35.2	5.4e-32
WP_000920120.1|4456519_4456933_+	hydroxyisourate hydrolase	NA	NA	NA	NA	NA
WP_000740107.1|4457041_4458046_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_001240091.1|4458046_4458682_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_001007805.1|4458938_4459589_+	metal-binding protein ZinT	NA	NA	NA	NA	NA
WP_001079074.1|4459931_4460462_+	cytochrome b	NA	A0A0U2QLA7	Escherichia_phage	100.0	1.9e-56
WP_001301431.1|4461214_4462012_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_122988082.1|4464026_4465691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087514672.1|4465696_4466909_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	98.6	1.9e-168
WP_123007928.1|4466875_4471795_+	hypothetical protein	NA	A0A0N7BTS3	Escherichia_phage	96.2	6.3e-05
WP_087514673.1|4472056_4473109_-	glycosyltransferase family 9 protein	NA	NA	NA	NA	NA
WP_000378594.1|4473423_4474740_+	shikimate transporter	NA	NA	NA	NA	NA
WP_001060244.1|4474841_4476296_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_000532923.1|4476638_4477355_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_122653965.1|4477981_4479625_-	toxic metabolite efflux MATE transporter YeeO	NA	NA	NA	NA	NA
WP_001011039.1|4479742_4480693_-	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA	NA
WP_001011482.1|4480794_4481712_-	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA	NA
WP_001310930.1|4482169_4483105_-	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_001193786.1|4483166_4484246_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001297350.1|4484257_4485001_-	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA	NA
WP_000973176.1|4484997_4485543_-	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA	NA
WP_000667426.1|4487596_4488811_+	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001066368.1|4488824_4489583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000656352.1|4490607_4491642_+	phosphotriesterase	NA	NA	NA	NA	NA
WP_001221617.1|4493956_4494367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000270974.1|4494354_4494756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_089615216.1|4494895_4495753_+	GTPase family protein	NA	NA	NA	NA	NA
WP_087514674.1|4495970_4497413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158293146.1|4497871_4498066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032082634.1|4498480_4498654_-|transposase	transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	54.2	1.1e-10
WP_001016348.1|4498680_4498863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000450409.1|4498963_4499293_-	DUF496 family protein	NA	NA	NA	NA	NA
WP_000399679.1|4500077_4501058_-|transposase	IS110-like element IS621 family transposase	transposase	NA	NA	NA	NA
WP_001200903.1|4501121_4501802_-	FUSC family protein	NA	NA	NA	NA	NA
WP_001105412.1|4501999_4502473_-	DNA gyrase inhibitor SbmC	NA	NA	NA	NA	NA
WP_000830173.1|4502591_4503758_-	serine-type D-Ala-D-Ala carboxypeptidase DacD	NA	B6DZZ7	Stx2-converting_phage	98.5	7.2e-226
WP_000980592.1|4503966_4505394_+	exodeoxyribonuclease I	NA	NA	NA	NA	NA
WP_000985278.1|4505436_4505664_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_000492312.1|4505677_4506736_-	transport protein YeeE	NA	NA	NA	NA	NA
WP_000019197.1|4506914_4508273_-	putrescine/proton symporter PlaP	NA	NA	NA	NA	NA
WP_010723108.1|4508262_4508325_-	membrane protein YoeI	NA	NA	NA	NA	NA
WP_000803351.1|4508539_4509469_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000754737.1|4509514_4510339_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_001364200.1|4510763_4510814_+	his operon leader peptide	NA	NA	NA	NA	NA
WP_000131782.1|4510959_4511859_+	ATP phosphoribosyltransferase	NA	A0A0F7Q4B0	Cellulophaga_phage	94.7	1.8e-11
WP_016242234.1|4511864_4513169_+	histidinol dehydrogenase	NA	NA	NA	NA	NA
WP_085452475.1|4513165_4514236_+	histidinol-phosphate transaminase	NA	NA	NA	NA	NA
WP_000080085.1|4514235_4515303_+	bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
WP_001103560.1|4515302_4515893_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
WP_000586449.1|4515892_4516630_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA	NA
WP_085452476.1|4516611_4517388_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
WP_043016853.1|4517381_4517993_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA	NA
WP_087514676.1|4521255_4521606_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	65.5	3.1e-39
WP_130085888.1|4522298_4522457_+	chemotaxis protein	NA	NA	NA	NA	NA
WP_085452477.1|4522470_4523493_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.1	1.3e-199
>prophage 8
NZ_CP018840	Escherichia coli strain KSC64 chromosome, complete genome	4759716	4642576	4652017	4759716		Enterobacteria_phage(85.71%)	10	NA	NA
WP_001292774.1|4642576_4643713_+	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.1e-162
WP_001298843.1|4643709_4645710_+	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.0	0.0e+00
WP_001378226.1|4645834_4646296_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	99.3	5.4e-76
WP_000950409.1|4646335_4646806_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	5.2e-82
WP_000598641.1|4646852_4647572_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295431.1|4647568_4649254_-	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_001240401.1|4649475_4650207_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
WP_001216961.1|4650266_4650374_+	protein YohO	NA	NA	NA	NA	NA
WP_000783120.1|4650354_4651086_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_000569329.1|4651090_4652017_-	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
