assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002163695.1_ASM216369v1	NZ_CP018840	Escherichia coli strain KSC64 chromosome, complete genome	1	581574-582703	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,18,16	18	TypeI-E	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|254aa|up_9|NZ_CP018840.1_573386_574148_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP018840.1_574128_575178_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP018840.1_575174_575654_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP018840.1_575653_576364_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP018840.1_576382_576694_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP018840.1_576887_577211_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP018840.1_577260_577866_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP018840.1_577865_579293_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP018840.1_579294_580203_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP018840.1_580454_581492_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP018840.1_582799_583093_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP018840.1_583092_584013_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP018840.1_584009_584660_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP018840.1_584641_585388_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP018840.1_585398_586454_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP018840.1_586465_587005_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP018840.1_587001_588564_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP018840.1_588661_591361_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP018840.1_591555_591708_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP018840.1_591972_592707_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_002163695.1_ASM216369v1	NZ_CP018840	Escherichia coli strain KSC64 chromosome, complete genome	2	608407-608740	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	NA,NA|47aa|down_1|NZ_CP018840.1_609888_610029_+	NA|424aa|up_9|NZ_CP018840.1_597050_598322_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP018840.1_598312_598573_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP018840.1_598589_599165_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP018840.1_599312_600173_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP018840.1_600169_600949_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP018840.1_600926_602264_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP018840.1_602357_603812_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP018840.1_603881_604667_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP018840.1_604985_606263_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP018840.1_606289_607768_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP018840.1_609078_609750_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP018840.1_609888_610029_+	NA	NA|291aa|down_2|NZ_CP018840.1_610042_610915_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP018840.1_610974_612273_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP018840.1_612360_613998_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP018840.1_614225_615017_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP018840.1_615087_615423_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP018840.1_615422_615671_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP018840.1_615748_617983_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP018840.1_618030_619332_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_002163695.1_ASM216369v1	NZ_CP018840	Escherichia coli strain KSC64 chromosome, complete genome	3	2252949-2253098	3	CRISPRCasFinder	no	cas3	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	Unclear	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DEDDh,DinG,c2c9_V-U4	NA|504aa|up_6|NZ_CP018840.1_2244203_2245715_+,NA|78aa|down_6|NZ_CP018840.1_2261676_2261910_+,NA|298aa|down_7|NZ_CP018840.1_2262072_2262966_+	NA|238aa|up_9|NZ_CP018840.1_2242106_2242820_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP018840.1_2242890_2243484_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP018840.1_2243628_2244081_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|504aa|up_6|NZ_CP018840.1_2244203_2245715_+	NA	NA|338aa|up_5|NZ_CP018840.1_2245899_2246913_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP018840.1_2247074_2247491_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP018840.1_2247536_2248040_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP018840.1_2248232_2249429_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP018840.1_2249482_2252338_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP018840.1_2252337_2252781_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP018840.1_2253134_2254646_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP018840.1_2254912_2256013_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP018840.1_2256012_2257095_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|546aa|down_3|NZ_CP018840.1_2257077_2258715_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP018840.1_2258844_2259864_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|415aa|down_5|NZ_CP018840.1_2260329_2261574_+	PRK09692, PRK09692, integrase; Provisional	NA|78aa|down_6|NZ_CP018840.1_2261676_2261910_+	NA	NA|298aa|down_7|NZ_CP018840.1_2262072_2262966_+	NA	NA|417aa|down_8|NZ_CP018840.1_2263039_2264290_+	COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]	NA|378aa|down_9|NZ_CP018840.1_2264286_2265420_+	TIGR03187, hypothetical_protein, DGQHR domain
