The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	0	29833	2110610	tRNA	Streptococcus_phage(100.0%)	30	NA	NA
WP_011609851.1|916_1135_+	cell division protein ZapB	NA	NA	NA	NA	NA
WP_075294276.1|1201_1651_+	FMN-binding protein MioC	NA	NA	NA	NA	NA
WP_075294277.1|2030_3920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_075294278.1|3919_4582_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_075294279.1|4694_5084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012340946.1|5102_5900_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_012340945.1|5998_6253_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_011609844.1|6317_6788_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_075294280.1|6801_7350_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_011609842.1|7362_8904_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_011609841.1|8927_9797_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_075294281.1|9810_11184_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_011609839.1|11226_11655_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_075294282.1|11843_12155_+	BolA family transcriptional regulator	NA	NA	NA	NA	NA
WP_075294302.1|12481_13822_+	Na(+)-translocating NADH-quinone reductase subunit A	NA	NA	NA	NA	NA
WP_011609836.1|13824_15063_+	NADH:ubiquinone reductase (Na(+)-transporting) subunit B	NA	NA	NA	NA	NA
WP_011609835.1|15055_15832_+	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA	NA
WP_011609834.1|15831_16455_+	NADH:ubiquinone reductase (Na(+)-transporting) subunit D	NA	NA	NA	NA	NA
WP_011609833.1|16458_17055_+	NADH:ubiquinone reductase (Na(+)-transporting) subunit E	NA	NA	NA	NA	NA
WP_011609832.1|17069_18293_+	NADH:ubiquinone reductase (Na(+)-transporting) subunit F	NA	NA	NA	NA	NA
WP_011609831.1|18397_18910_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_075294283.1|18925_19975_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_012340933.1|19984_20239_+	(Na+)-NQR maturation NqrM	NA	NA	NA	NA	NA
WP_075294284.1|20278_20791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075294285.1|20825_21977_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_012340930.1|22060_22654_-	molecular chaperone TorD	NA	NA	NA	NA	NA
WP_075294286.1|22650_25119_-	trimethylamine-N-oxide reductase TorA	NA	NA	NA	NA	NA
WP_075294287.1|25133_26303_-	pentaheme c-type cytochrome TorC	NA	NA	NA	NA	NA
WP_075294288.1|26564_28046_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_075294289.1|28174_29833_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	33.0	1.1e-73
>prophage 2
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	41057	45352	2110610		Synechococcus_phage(50.0%)	4	NA	NA
WP_075294297.1|41057_42512_-	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	NA	E3SJC4	Synechococcus_phage	31.6	4.3e-34
WP_075294298.1|42631_43057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075294299.1|43112_43811_-	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_011609796.1|43861_45352_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.5	1.6e-84
>prophage 3
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	48864	52223	2110610		Streptococcus_phage(50.0%)	2	NA	NA
WP_011609790.1|48864_50967_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	26.8	1.2e-58
WP_011608348.1|51038_52223_+	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	25.1	6.4e-12
>prophage 4
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	60029	60410	2110610		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_011609781.1|60029_60410_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	33.6	4.7e-09
>prophage 5
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	74736	77792	2110610		Staphylococcus_phage(50.0%)	2	NA	NA
WP_011609774.1|74736_76353_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	52.5	1.2e-138
WP_075294037.1|76532_77792_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	53.0	3.5e-101
>prophage 6
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	80862	87675	2110610	protease	Prochlorococcus_phage(33.33%)	7	NA	NA
WP_075294039.1|80862_82461_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	50.0	1.7e-71
WP_075294040.1|82595_83105_-|protease	SprT family zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_075294041.1|83182_84337_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	62.0	1.2e-127
WP_011609768.1|84611_85190_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_075294042.1|85200_85995_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_075294043.1|86004_86817_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_075294044.1|86823_87675_+	thymidylate synthase	NA	H9EB68	Vibrio_phage	76.7	4.9e-131
>prophage 7
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	103951	104881	2110610		Synechococcus_phage(100.0%)	1	NA	NA
WP_011609759.1|103951_104881_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SL51	Synechococcus_phage	36.0	2.8e-31
>prophage 8
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	123342	129916	2110610		Bodo_saltans_virus(33.33%)	6	NA	NA
WP_011609739.1|123342_124710_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.3	8.2e-112
WP_075294259.1|124789_125227_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_075294258.1|125394_126162_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_075294257.1|126247_127528_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_012341265.1|127527_128004_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	38.2	6.7e-21
WP_075294256.1|128077_129916_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.2	6.2e-30
>prophage 9
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	138531	143167	2110610		Staphylococcus_phage(50.0%)	3	NA	NA
WP_075294253.1|138531_140049_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	3.8e-17
WP_012341274.1|140086_141043_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_075294267.1|141229_143167_+	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	E5EQ70	Micromonas_sp._RCC1109_virus	23.6	2.7e-20
>prophage 10
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	150213	151134	2110610		Dickeya_phage(50.0%)	2	NA	NA
WP_041604994.1|150213_150453_-	sulfurtransferase TusA	NA	A0A140XB86	Dickeya_phage	63.9	4.7e-07
WP_075294251.1|150525_151134_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	41.3	2.3e-18
>prophage 11
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	162280	174562	2110610		Chrysochromulina_ericina_virus(33.33%)	5	NA	NA
WP_075294085.1|162280_166309_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.2	3.0e-21
WP_011609710.1|166399_170662_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.7	2.4e-69
WP_075294086.1|170998_171850_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_075294087.1|172043_172979_+	D-allose transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_075294088.1|173026_174562_+	D-allose ABC transporter ATP-binding protein AlsA	NA	A0A2H4PQG7	Staphylococcus_phage	32.7	2.2e-20
>prophage 12
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	178084	193229	2110610	protease	uncultured_Caudovirales_phage(28.57%)	14	NA	NA
WP_012341395.1|178084_179416_-	HslU--HslV peptidase ATPase subunit	NA	A0A191ZC11	Erwinia_phage	29.4	9.3e-44
WP_011609687.1|179433_179961_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_075294092.1|180247_181312_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_075294103.1|181328_181919_+	DUF416 family protein	NA	NA	NA	NA	NA
WP_012341398.1|182077_182353_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	59.6	4.3e-20
WP_075294093.1|182508_183291_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_075294094.1|183316_185149_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1HRE7	Paramecium_bursaria_Chlorella_virus	44.1	1.8e-130
WP_075294095.1|185220_186051_-	MetQ/NlpA family lipoprotein	NA	NA	NA	NA	NA
WP_075294096.1|186086_186776_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_075294097.1|186765_187803_-	methionine ABC transporter ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	37.7	9.8e-33
WP_012341404.1|187957_188512_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_075294098.1|188663_189779_-	hypothetical protein	NA	A0A2H4J4K4	uncultured_Caudovirales_phage	38.8	1.0e-19
WP_075294099.1|189787_191830_-	N-6 DNA methylase	NA	A0A2H4JBT5	uncultured_Caudovirales_phage	36.0	6.5e-81
WP_075294100.1|192086_193229_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.6	2.1e-52
>prophage 13
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	204034	205480	2110610		Mycoplasma_phage(100.0%)	1	NA	NA
WP_075294421.1|204034_205480_-	leucyl aminopeptidase family protein	NA	Q6GYZ8	Mycoplasma_phage	28.8	1.4e-40
>prophage 14
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	208803	213790	2110610	tRNA	uncultured_Mediterranean_phage(50.0%)	4	NA	NA
WP_075294425.1|208803_211704_+	RNA polymerase-associated protein RapA	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	38.4	1.6e-19
WP_075294426.1|211705_212371_+|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	tRNA	NA	NA	NA	NA
WP_075294427.1|212439_213204_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_011609664.1|213262_213790_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	66.3	7.4e-61
>prophage 15
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	217912	223972	2110610	tRNA	Enterobacteria_phage(33.33%)	5	NA	NA
WP_075294430.1|217912_218734_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	Q1MVG7	Enterobacteria_phage	44.1	7.3e-07
WP_075294431.1|219020_221603_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	42.4	6.3e-190
WP_075294432.1|221651_222155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075294433.1|222154_223195_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_012341308.1|223321_223972_+	cell division ATP-binding protein FtsE	NA	G3M9Y6	Bacillus_virus	31.6	7.8e-20
>prophage 16
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	228119	236340	2110610		uncultured_Caudovirales_phage(20.0%)	9	NA	NA
WP_081376604.1|228119_229121_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.0	2.3e-15
WP_075294438.1|229117_229885_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.2	1.5e-14
WP_012341311.1|230105_231143_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	46.0	8.8e-74
WP_012341312.1|231330_232005_-	DNA mismatch repair endonuclease MutH	NA	NA	NA	NA	NA
WP_075294439.1|232001_232544_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.3	2.2e-28
WP_087449220.1|232595_233999_-	porin	NA	NA	NA	NA	NA
WP_011609693.1|234248_234545_+	YfcZ/YiiS family protein	NA	NA	NA	NA	NA
WP_011609692.1|234699_235389_+	pirin family protein	NA	NA	NA	NA	NA
WP_011609691.1|235497_236340_-	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	39.1	3.2e-42
>prophage 17
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	245478	311672	2110610	plate,tRNA,tail,head	Haemophilus_phage(37.5%)	72	NA	NA
WP_075319822.1|245478_249372_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	51.3	1.5e-110
WP_075294446.1|249553_250591_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA	NA
WP_075294447.1|250631_251207_-	DedA family protein	NA	NA	NA	NA	NA
WP_011609651.1|251236_251977_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	49.0	2.9e-63
WP_075294448.1|252000_253008_-|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_075294449.1|253007_253496_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_075294450.1|253508_255314_-	potassium transporter	NA	NA	NA	NA	NA
WP_075294451.1|255319_256003_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_011609646.1|256003_256285_-	cell division protein FtsB	NA	NA	NA	NA	NA
WP_011609645.1|256294_256771_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_075294452.1|256950_259254_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_075294453.1|259320_260637_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_011609642.1|260674_261256_-	Fe-S biogenesis protein NfuA	NA	NA	NA	NA	NA
WP_075294454.1|261348_262047_-	amidophosphoribosyltransferase	NA	NA	NA	NA	NA
WP_075294455.1|262193_263006_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_075294456.1|263137_264178_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_075294457.1|264187_264820_+	dTMP kinase	NA	W8D0J5	Erwinia_phage	33.9	2.0e-20
WP_075294458.1|264812_265802_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_075294459.1|265810_266593_+	YchF/TatD family DNA exonuclease	NA	NA	NA	NA	NA
WP_012341351.1|266620_267148_+	DUF1523 family protein	NA	NA	NA	NA	NA
WP_011609634.1|267208_268498_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_075294460.1|268638_269082_-	DUF2846 domain-containing protein	NA	NA	NA	NA	NA
WP_075294461.1|269103_269709_-	porin family protein	NA	NA	NA	NA	NA
WP_075294462.1|270037_270607_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_041604350.1|271049_272249_+	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	23.7	1.4e-22
WP_012341357.1|272258_272489_+	membrane protein	NA	NA	NA	NA	NA
WP_087437317.1|272537_274049_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	37.4	7.7e-87
WP_135026534.1|274122_275221_-	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	44.1	2.2e-06
WP_075294464.1|275351_276050_+	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA	NA
WP_075294465.1|276042_277764_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.5	4.1e-68
WP_011609624.1|277958_278648_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_075294466.1|279944_280571_-	DUF4376 domain-containing protein	NA	F6MIL9	Haemophilus_phage	57.2	1.8e-58
WP_012340329.1|280633_280885_+	cytotoxic translational repressor of toxin-antitoxin stability system	NA	A0A1S5NR91	Burkholderia_phage	50.6	1.2e-13
WP_012341722.1|280868_281216_+	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	50.9	1.3e-18
WP_157665525.1|281222_282257_-	hypothetical protein	NA	Q94MY0	Haemophilus_virus	49.2	2.5e-60
WP_075294227.1|282234_282774_-	hypothetical protein	NA	M1TAS6	Escherichia_phage	38.2	2.1e-15
WP_075294226.1|282776_283340_-	YmfQ family protein	NA	A0A0M3LQE1	Mannheimia_phage	41.9	4.8e-34
WP_075294225.1|283339_284401_-|plate	baseplate J/gp47 family protein	plate	F6MIL6	Haemophilus_phage	72.4	1.1e-145
WP_075294224.1|284413_284764_-	hypothetical protein	NA	A0A0M3LQK5	Mannheimia_phage	78.4	9.9e-46
WP_075294223.1|284866_285526_-|plate	phage baseplate assembly protein V	plate	A0A0M3LPA3	Mannheimia_phage	69.4	1.3e-83
WP_075294228.1|285522_286629_-|tail	phage tail protein	tail	F6MIL3	Haemophilus_phage	72.3	1.1e-159
WP_075294222.1|286639_287995_-	hypothetical protein	NA	F6MIL2	Haemophilus_phage	61.9	1.4e-159
WP_075294221.1|288036_290169_-	hypothetical protein	NA	A0A0M3LPB6	Mannheimia_phage	37.0	9.8e-96
WP_087437316.1|290439_290727_-	hypothetical protein	NA	A0A0M3LSI2	Mannheimia_phage	52.8	3.5e-17
WP_075294219.1|290795_291170_-|tail	phage tail protein	tail	F6MIK8	Haemophilus_phage	85.5	3.3e-55
WP_075294218.1|291181_292603_-|tail	phage tail protein	tail	B7SDP8	Haemophilus_phage	74.8	1.5e-196
WP_075294217.1|292602_292776_-	DUF2635 domain-containing protein	NA	A0A0M3LQM9	Mannheimia_phage	72.7	3.7e-14
WP_075294216.1|292762_293029_-	hypothetical protein	NA	B7SDP6	Haemophilus_phage	67.1	6.0e-27
WP_075294215.1|293025_293664_-	DUF1834 family protein	NA	B7SDP5	Haemophilus_phage	70.8	5.0e-80
WP_075294214.1|293660_294083_-	DUF1320 domain-containing protein	NA	A0A0M3LP98	Mannheimia_phage	64.5	6.5e-44
WP_075294213.1|294161_295142_-|head	head protein	head	B7SDP1	Haemophilus_phage	73.8	1.2e-133
WP_081376597.1|295141_295687_-	hypothetical protein	NA	A0A0M3LPA7	Mannheimia_phage	75.4	1.1e-62
WP_075294211.1|297186_298806_-	DUF935 domain-containing protein	NA	A0A0M3LRU4	Mannheimia_phage	84.1	4.4e-266
WP_075294210.1|300601_301111_-	DUF1804 family protein	NA	F6MIK6	Haemophilus_phage	72.2	8.7e-67
WP_075294209.1|301113_301368_-	hypothetical protein	NA	A0A0M3LP87	Mannheimia_phage	45.0	1.6e-08
WP_075294208.1|301364_301619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075294207.1|301602_301812_-	lipoprotein	NA	F6MIK2	Haemophilus_phage	46.4	1.6e-06
WP_075294206.1|301735_301993_-	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
WP_075294205.1|301989_302220_-	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	52.7	8.0e-12
WP_075294204.1|302226_302769_-	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	67.2	2.5e-72
WP_075294203.1|302858_303284_-	mor transcription activator family protein	NA	F6MIJ8	Haemophilus_phage	66.4	1.5e-48
WP_075294202.1|303408_303615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075294201.1|303625_304294_-	hypothetical protein	NA	A0A0R6PJV6	Moraxella_phage	45.3	2.7e-20
WP_075294200.1|305022_305211_+	ribbon-helix-helix protein, CopG family	NA	Q19US2	Mannheimia_phage	52.7	2.8e-07
WP_075294199.1|305304_305763_-	regulatory protein GemA	NA	NA	NA	NA	NA
WP_135026520.1|305900_306143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075294197.1|306127_306343_-	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_075294196.1|307139_307445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075294195.1|307441_307630_-	hypothetical protein	NA	F6MII8	Haemophilus_phage	80.0	1.3e-20
WP_075294194.1|307637_308519_-	AAA family ATPase	NA	A0A0M3LP72	Mannheimia_phage	85.0	3.7e-134
WP_075294193.1|310488_310752_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_075294192.1|310874_311672_+	transcriptional regulator	NA	A0A0M4UKA3	Ralstonia_phage	27.4	8.6e-13
>prophage 18
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	314852	319542	2110610		Vibrio_phage(66.67%)	3	NA	NA
WP_075294189.1|314852_316649_+	ABC transporter ATP-binding protein/permease	NA	G3M9Y6	Bacillus_virus	29.9	1.4e-10
WP_075294188.1|316932_319059_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	62.6	2.6e-258
WP_011609618.1|319074_319542_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	H6WXC9	Vibrio_phage	60.1	8.0e-51
>prophage 19
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	323749	327816	2110610	holin	Indivirus(33.33%)	4	NA	NA
WP_075294184.1|323749_324550_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	31.0	1.7e-08
WP_075294183.1|324658_325285_+	guanylate kinase	NA	A0A218KC48	Bacillus_phage	32.1	1.2e-14
WP_011609609.1|325339_325612_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_075294182.1|325692_327816_+	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	38.9	3.3e-11
>prophage 20
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	346316	350930	2110610		Bacillus_phage(33.33%)	5	NA	NA
WP_087449209.1|346316_347549_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A0S2SXL7	Bacillus_phage	33.7	7.1e-06
WP_041604337.1|347550_348408_+	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_087449208.1|348462_348915_-	transcriptional regulator AsnC	NA	NA	NA	NA	NA
WP_075294409.1|349098_350091_+	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	36.0	8.4e-50
WP_075294408.1|350207_350930_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	35.0	6.4e-15
>prophage 21
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	362200	363313	2110610		Pseudomonas_phage(100.0%)	1	NA	NA
WP_075294403.1|362200_363313_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.7	3.4e-47
>prophage 22
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	388273	397807	2110610		Bodo_saltans_virus(25.0%)	9	NA	NA
WP_075294387.1|388273_389248_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	A0A2H4UV25	Bodo_saltans_virus	28.5	1.6e-05
WP_075294386.1|389249_389990_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_011608525.1|390042_390993_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	47.5	8.0e-66
WP_075290504.1|391110_391884_-	sulfate transporter CysZ	NA	NA	NA	NA	NA
WP_075294385.1|392043_393051_+	cell division protein ZipA	NA	NA	NA	NA	NA
WP_011608528.1|393563_395234_+	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	26.7	5.6e-38
WP_075294384.1|395257_395800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157665524.1|395805_395949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075294383.1|396208_397807_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.0	4.1e-22
>prophage 23
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	405550	407554	2110610		Serratia_phage(100.0%)	1	NA	NA
WP_075294377.1|405550_407554_-	NAD-dependent DNA ligase LigA	NA	A0A289ZTZ3	Serratia_phage	48.7	5.2e-139
>prophage 24
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	424335	431084	2110610		Streptococcus_phage(25.0%)	5	NA	NA
WP_075294336.1|424335_425916_+	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	25.4	2.4e-30
WP_075294335.1|426032_428468_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_075294334.1|428629_429262_+	repressor LexA	NA	A5LH73	Enterobacteria_phage	45.5	2.4e-13
WP_012341541.1|429348_429774_-	nucleoside-diphosphate kinase	NA	A0A0M5KH58	Mollivirus	38.1	1.5e-11
WP_075294333.1|429785_431084_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	29.9	1.8e-28
>prophage 25
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	434423	437226	2110610		Micromonas_sp._RCC1109_virus(50.0%)	2	NA	NA
WP_012341544.1|434423_435977_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	25.3	4.2e-11
WP_075294331.1|436572_437226_+	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	A0A2H4UU96	Bodo_saltans_virus	26.8	1.5e-07
>prophage 26
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	443274	445131	2110610		Hokovirus(100.0%)	1	NA	NA
WP_075294328.1|443274_445131_+	response regulator	NA	A0A1V0SGX0	Hokovirus	28.3	5.4e-42
>prophage 27
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	450857	454633	2110610	tRNA	Streptococcus_phage(33.33%)	4	NA	NA
WP_011608564.1|450857_452114_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	46.1	1.1e-94
WP_011608565.1|452123_452795_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_011608566.1|452955_453543_-	thymidine kinase	NA	A0A2H4YFP5	Citrobacter_phage	53.2	3.3e-54
WP_011608567.1|453604_454633_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	56.2	7.0e-108
>prophage 28
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	465137	466601	2110610		Klosneuvirus(100.0%)	1	NA	NA
WP_075294321.1|465137_466601_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.1	1.4e-96
>prophage 29
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	471124	475440	2110610		Clostridium_phage(40.0%)	6	NA	NA
WP_008752997.1|471124_471340_+	helix-turn-helix transcriptional regulator	NA	A0A2K5B263	Erysipelothrix_phage	46.4	4.0e-13
WP_075294316.1|471332_472373_+	DNA cytosine methyltransferase	NA	Q6DMX0	Streptococcus_phage	49.5	5.5e-76
WP_075294315.1|472378_473464_+	HpaII family restriction endonuclease	NA	NA	NA	NA	NA
WP_075294314.1|473463_473907_+	DNA mismatch endonuclease Vsr	NA	E5E3X5	Burkholderia_phage	38.9	1.8e-23
WP_075294313.1|473956_474865_+	DUF4868 domain-containing protein	NA	Q24LC1	Clostridium_phage	40.1	2.1e-55
WP_081376599.1|474879_475440_+	hypothetical protein	NA	A0A090DC14	Clostridium_phage	37.7	3.8e-23
>prophage 30
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	481816	482080	2110610		Streptococcus_phage(100.0%)	1	NA	NA
WP_087437288.1|481816_482080_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	57.0	2.6e-22
>prophage 31
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	488064	491583	2110610	transposase	uncultured_Mediterranean_phage(33.33%)	3	NA	NA
WP_075294303.1|488064_489945_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.2	3.7e-115
WP_075319829.1|490121_490400_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	62.2	5.5e-23
WP_075319828.1|490446_491583_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1B0VCD8	Salmonella_phage	55.3	5.4e-117
>prophage 32
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	500617	501915	2110610		uncultured_virus(50.0%)	2	NA	NA
WP_011608620.1|500617_501157_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.7	6.5e-12
WP_075294053.1|501285_501915_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	54.9	1.8e-58
>prophage 33
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	506159	508124	2110610		uncultured_virus(50.0%)	2	NA	NA
WP_011608624.1|506159_506450_+	co-chaperone GroES	NA	A0A221S322	uncultured_virus	38.9	5.9e-12
WP_011608625.1|506480_508124_+	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	66.9	1.1e-182
>prophage 34
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	511146	511629	2110610		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011608630.1|511146_511629_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.2	2.0e-25
>prophage 35
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	522386	529657	2110610	transposase	Tupanvirus(16.67%)	6	NA	NA
WP_075294045.1|522386_523358_+	elongation factor P--(R)-beta-lysine ligase	NA	A0A2K9L0E9	Tupanvirus	19.7	1.2e-05
WP_075319814.1|523472_523889_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	64.2	1.5e-48
WP_075319813.1|523935_525072_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1B0VCD8	Salmonella_phage	53.7	5.2e-112
WP_075294158.1|525227_526814_-	FAD-binding protein	NA	M1I0Y3	Acanthocystis_turfacea_Chlorella_virus	23.7	5.7e-08
WP_012341601.1|526894_527701_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	6.3e-19
WP_075294159.1|527704_529657_-	dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	1.8e-11
>prophage 36
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	541516	545143	2110610	tRNA	Enterococcus_phage(50.0%)	2	NA	NA
WP_075294165.1|541516_542257_+	site-specific DNA-methyltransferase	NA	A0A249XUJ2	Enterococcus_phage	34.3	4.5e-32
WP_075294166.1|542278_545143_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	38.1	1.3e-148
>prophage 37
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	548800	549568	2110610	tRNA	Pandoravirus(100.0%)	1	NA	NA
WP_075294170.1|548800_549568_-|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	S4VW33	Pandoravirus	31.2	3.0e-18
>prophage 38
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	557323	558832	2110610		Staphylococcus_phage(100.0%)	1	NA	NA
WP_075294172.1|557323_558832_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.3	1.8e-19
>prophage 39
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	567283	568291	2110610		Klosneuvirus(100.0%)	1	NA	NA
WP_011609402.1|567283_568291_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	43.9	3.2e-73
>prophage 40
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	575396	584927	2110610		Tupanvirus(20.0%)	8	NA	NA
WP_011609396.1|575396_577193_+	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	43.2	3.8e-24
WP_011609395.1|577203_578235_+	signal peptidase I	NA	NA	NA	NA	NA
WP_012341647.1|578441_579113_+	ribonuclease III	NA	A0A1C9C5A7	Heterosigma_akashiwo_virus	38.3	5.6e-21
WP_075294004.1|579165_580068_+	GTPase Era	NA	NA	NA	NA	NA
WP_075294005.1|580092_580680_+	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	32.2	7.0e-12
WP_005717672.1|580864_581080_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_075294006.1|581240_582995_+	DNA primase	NA	A0A1S5RF71	Helicobacter_phage	31.4	2.7e-43
WP_075294007.1|583061_584927_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.0	3.4e-36
>prophage 41
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	610436	620122	2110610	tRNA	Enterobacteria_phage(16.67%)	10	NA	NA
WP_075293518.1|610436_610913_+	flavin reductase	NA	Q9KX93	Enterobacteria_phage	48.4	2.5e-15
WP_075293517.1|610988_611933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293516.1|612206_613973_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	27.7	3.6e-11
WP_041605047.1|614133_614859_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	S5VMD2	Pseudomonas_phage	31.4	6.4e-23
WP_075293515.1|614896_615745_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.3	3.1e-29
WP_075293514.1|616336_616534_+	phage virion morphogenesis protein	NA	NA	NA	NA	NA
WP_012341730.1|616828_617206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_135026570.1|617303_617561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293512.1|617630_618569_-	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee	NA	A0A1W6JP29	Morganella_phage	39.4	4.8e-55
WP_075293511.1|618691_620122_+	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	28.6	1.7e-35
>prophage 42
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	627740	629255	2110610		Staphylococcus_phage(100.0%)	1	NA	NA
WP_075293504.1|627740_629255_-	D-xylose ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.4	1.2e-18
>prophage 43
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	635340	636634	2110610		Bradyrhizobium_phage(50.0%)	2	NA	NA
WP_075293501.1|635340_636099_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	40.3	7.6e-35
WP_012341759.1|636169_636634_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	53.2	5.9e-46
>prophage 44
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	641845	650039	2110610		Streptococcus_phage(33.33%)	5	NA	NA
WP_012341766.1|641845_642925_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	47.5	5.0e-88
WP_075293498.1|642983_644093_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.1	1.7e-19
WP_075293497.1|644155_645454_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_075293496.1|645686_646901_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_075293495.1|646922_650039_+	MMPL family transporter	NA	S5VTK5	Leptospira_phage	22.5	5.0e-56
>prophage 45
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	659004	662853	2110610		Synechococcus_phage(66.67%)	4	NA	NA
WP_087437281.1|659004_659778_-	glycosyltransferase family 25 protein	NA	A0A1D8KNF8	Synechococcus_phage	28.3	1.3e-08
WP_087449218.1|659892_660639_-	glycosyltransferase family 25 protein	NA	NA	NA	NA	NA
WP_087449225.1|660760_661666_+	glycosyltransferase family 25 protein	NA	A0A1D8KNF8	Synechococcus_phage	30.6	3.2e-11
WP_075293487.1|661803_662853_-	ferric ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.5	4.0e-34
>prophage 46
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	667301	671760	2110610		Catovirus(33.33%)	5	NA	NA
WP_011608800.1|667301_667943_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	37.2	2.1e-33
WP_011608801.1|667952_668537_+	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	42.3	8.5e-26
WP_075293485.1|668551_669745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293484.1|670024_671026_+	bile acid:sodium symporter family protein	NA	NA	NA	NA	NA
WP_011608804.1|671115_671760_+	adenylate kinase	NA	A0A2K9L833	Tupanvirus	36.2	7.0e-13
>prophage 47
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	675440	679176	2110610		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_011608808.1|675440_676751_-	sodium:proton antiporter	NA	A0A2H4J178	uncultured_Caudovirales_phage	38.1	3.5e-35
WP_075293481.1|677078_677429_-	RidA family protein	NA	NA	NA	NA	NA
WP_075293480.1|677539_678262_+	YwiC-like family protein	NA	NA	NA	NA	NA
WP_012341793.1|678276_679176_+	RimK family alpha-L-glutamate ligase	NA	A0A1D7SYT2	Cyanophage	30.1	9.4e-32
>prophage 48
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	683667	685647	2110610		Lactococcus_phage(100.0%)	1	NA	NA
WP_075293475.1|683667_685647_-	exoribonuclease II	NA	Q0GXV6	Lactococcus_phage	25.5	3.0e-30
>prophage 49
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	693571	697560	2110610		Diachasmimorpha_longicaudata_entomopoxvirus(50.0%)	4	NA	NA
WP_075293472.1|693571_694126_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	41.6	1.1e-30
WP_075293471.1|694195_695248_+	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA	NA
WP_011609253.1|695470_695728_+	phosphocarrier protein Hpr	NA	NA	NA	NA	NA
WP_075293470.1|695832_697560_+	phosphoenolpyruvate-protein phosphotransferase PtsI	NA	A0A1V0SGR7	Hokovirus	33.1	7.4e-17
>prophage 50
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	703105	704530	2110610		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_011609248.1|703105_704530_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.8	2.2e-43
>prophage 51
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	727077	737356	2110610		Organic_Lake_phycodnavirus(40.0%)	9	NA	NA
WP_075293705.1|727077_728808_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	F2Y1V5	Organic_Lake_phycodnavirus	29.9	9.3e-20
WP_075293706.1|728807_730571_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	F2Y1V6	Organic_Lake_phycodnavirus	27.8	2.0e-14
WP_075293707.1|730636_731590_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	43.9	3.0e-60
WP_012340222.1|731718_732459_-	pyruvate formate lyase 1-activating protein	NA	M4MAG2	Vibrio_phage	47.9	3.3e-06
WP_075293708.1|732524_733229_-	DUF2063 domain-containing protein	NA	NA	NA	NA	NA
WP_075293709.1|733213_734134_-	DUF692 family protein	NA	NA	NA	NA	NA
WP_075293710.1|734179_734416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293711.1|734438_734897_-	DoxX family protein	NA	NA	NA	NA	NA
WP_011609291.1|735031_737356_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.6	6.4e-157
>prophage 52
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	742040	745515	2110610		EBPR_podovirus(50.0%)	2	NA	NA
WP_011609284.1|742040_742505_-	single-stranded DNA-binding protein	NA	F8TUL2	EBPR_podovirus	53.2	2.0e-38
WP_087449197.1|742683_745515_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.4	1.0e-310
>prophage 53
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	756239	762503	2110610	tRNA	Vibrio_phage(40.0%)	5	NA	NA
WP_075293725.1|756239_758864_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.6	8.4e-81
WP_012340249.1|759050_759233_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	62.7	6.3e-12
WP_012340250.1|759266_760631_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.4	3.3e-28
WP_075293726.1|760704_761592_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.2	1.2e-60
WP_075293727.1|761639_762503_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S6L1V5	Vibrio_phage	48.9	1.7e-62
>prophage 54
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	781063	781711	2110610		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_075293741.1|781063_781711_-	hexitol phosphatase HxpB	NA	M1IMD4	Acanthocystis_turfacea_Chlorella_virus	29.1	2.3e-11
>prophage 55
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	816521	820603	2110610		Diachasmimorpha_longicaudata_entomopoxvirus(50.0%)	4	NA	NA
WP_075293764.1|816521_818327_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.6	9.6e-52
WP_005627617.1|818388_818607_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_075293765.1|818817_819489_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
WP_075293766.1|819595_820603_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.0	1.8e-87
>prophage 56
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	832968	838044	2110610		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_075293771.1|832968_835824_-	DNA polymerase I	NA	A0A2H4J6W7	uncultured_Caudovirales_phage	29.4	1.7e-63
WP_075293772.1|836031_838044_+	DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.6	1.2e-114
>prophage 57
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	844448	846278	2110610	protease	Ostreococcus_tauri_virus(100.0%)	1	NA	NA
WP_075293954.1|844448_846278_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	H8ZJI5	Ostreococcus_tauri_virus	41.8	4.0e-114
>prophage 58
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	850200	858577	2110610	tRNA	Pandoravirus(33.33%)	6	NA	NA
WP_087449194.1|850200_851028_+	dihydropteroate synthase	NA	S4VNV0	Pandoravirus	25.8	3.6e-14
WP_075293776.1|851118_852453_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_012340375.1|852466_852934_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA	NA
WP_075293778.1|854025_855948_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.4	1.2e-95
WP_011608887.1|855952_856669_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_011608888.1|856894_858577_+	long-chain-fatty-acid--CoA ligase FadD	NA	A0A2H4PQM9	Staphylococcus_phage	26.4	1.0e-31
>prophage 59
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	863389	864235	2110610		Streptococcus_phage(100.0%)	1	NA	NA
WP_075293782.1|863389_864235_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	40.8	1.7e-46
>prophage 60
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	876215	878147	2110610	protease,tRNA	Pseudomonas_phage(50.0%)	2	NA	NA
WP_075293787.1|876215_876671_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	53.9	2.3e-26
WP_012340395.1|876743_878147_-|tRNA	asparagine--tRNA ligase	tRNA	A0A1V0SDB6	Indivirus	37.4	2.6e-81
>prophage 61
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	884660	886178	2110610		Staphylococcus_phage(100.0%)	1	NA	NA
WP_075293791.1|884660_886178_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.4	2.0e-18
>prophage 62
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	890589	892080	2110610		Staphylococcus_phage(100.0%)	1	NA	NA
WP_075293796.1|890589_892080_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.7	2.2e-17
>prophage 63
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	902514	903564	2110610		Bacillus_virus(100.0%)	1	NA	NA
WP_087449193.1|902514_903564_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.1	7.9e-30
>prophage 64
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	912793	913810	2110610		Tupanvirus(100.0%)	1	NA	NA
WP_075293804.1|912793_913810_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	49.5	3.5e-91
>prophage 65
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	936526	940813	2110610		Tupanvirus(50.0%)	3	NA	NA
WP_075293807.1|936526_938470_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.6	1.2e-52
WP_075293808.1|938561_939731_-	hemagglutinin	NA	NA	NA	NA	NA
WP_011608747.1|940018_940813_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.6e-11
>prophage 66
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	948111	955569	2110610		Bacillus_virus(50.0%)	5	NA	NA
WP_011608754.1|948111_948375_-	glutaredoxin, GrxA family	NA	A0A2I7SAE2	Vibrio_phage	67.5	4.7e-24
WP_075293813.1|948494_950741_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	35.8	1.1e-84
WP_075293814.1|950839_952735_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.2	4.8e-94
WP_075293815.1|952787_954074_-	AmpG family muropeptide MFS transporter	NA	NA	NA	NA	NA
WP_075293816.1|954255_955569_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	78.3	7.7e-176
>prophage 67
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	966149	968618	2110610		Escherichia_phage(100.0%)	1	NA	NA
WP_075293822.1|966149_968618_-	trimethylamine-N-oxide reductase TorA	NA	A0A077SK27	Escherichia_phage	30.4	4.8e-78
>prophage 68
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	974524	979358	2110610		Orpheovirus(33.33%)	5	NA	NA
WP_011608965.1|974524_975133_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	37.8	3.7e-24
WP_075293827.1|975185_976526_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.9	2.4e-79
WP_011608967.1|976591_977206_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_012340443.1|977427_977841_+	DUF1043 family protein	NA	NA	NA	NA	NA
WP_011608969.1|977969_979358_+	Do family serine endopeptidase	NA	A0A1B1IT49	uncultured_Mediterranean_phage	27.8	2.1e-22
>prophage 69
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	983175	985671	2110610		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_012340449.1|983175_985671_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	25.4	1.3e-27
>prophage 70
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	992471	992813	2110610		Lake_Baikal_phage(100.0%)	1	NA	NA
WP_011608980.1|992471_992813_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	48.6	2.5e-25
>prophage 71
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	996471	996945	2110610		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011608983.1|996471_996945_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	46.7	3.0e-29
>prophage 72
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1007466	1010552	2110610		Acinetobacter_phage(100.0%)	3	NA	NA
WP_075293842.1|1007466_1008885_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	39.8	5.8e-36
WP_075293843.1|1008897_1009902_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	33.6	7.5e-46
WP_012340472.1|1009946_1010552_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	38.0	3.7e-32
>prophage 73
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1015694	1035139	2110610	protease,tRNA	Tupanvirus(12.5%)	20	NA	NA
WP_075293847.1|1015694_1017623_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.9	2.6e-127
WP_075293848.1|1017678_1018527_-	co-chaperone YbbN	NA	NA	NA	NA	NA
WP_075293849.1|1018863_1020174_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	37.9	1.5e-70
WP_075293850.1|1020255_1020792_+	elongation factor P hydroxylase	NA	NA	NA	NA	NA
WP_075293851.1|1020792_1021722_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	35.2	1.1e-24
WP_075293852.1|1021721_1022486_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_075293853.1|1022595_1023978_-	LOG family protein	NA	NA	NA	NA	NA
WP_087449191.1|1023990_1024830_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	36.7	2.9e-35
WP_075293855.1|1024845_1025634_-	Zn-ribbon-containing protein	NA	NA	NA	NA	NA
WP_075293856.1|1025719_1026034_+	YqcC family protein	NA	NA	NA	NA	NA
WP_075293857.1|1026018_1026741_+|tRNA	tRNA pseudouridine(65) synthase TruC	tRNA	NA	NA	NA	NA
WP_012340488.1|1026767_1026935_+	YoaH family protein	NA	NA	NA	NA	NA
WP_011609009.1|1027084_1027294_+	cold shock domain-containing protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	46.3	2.3e-10
WP_075293858.1|1027365_1027812_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_087437272.1|1027963_1029775_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_075293860.1|1029869_1030859_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.4	6.5e-34
WP_075293861.1|1030873_1031353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293862.1|1031367_1033755_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_011609015.1|1033757_1034051_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	41.1	1.0e-11
WP_011609016.1|1034194_1035139_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	82.3	5.4e-123
>prophage 74
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1043864	1046759	2110610		Staphylococcus_phage(50.0%)	2	NA	NA
WP_075293866.1|1043864_1045415_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	43.6	3.0e-102
WP_075293867.1|1045676_1046759_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	27.0	3.6e-22
>prophage 75
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1053777	1054197	2110610		Sphingomonas_phage(100.0%)	1	NA	NA
WP_012340506.1|1053777_1054197_+	hypothetical protein	NA	H9NBX2	Sphingomonas_phage	53.5	3.9e-33
>prophage 76
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1057213	1057756	2110610		Agrobacterium_phage(100.0%)	1	NA	NA
WP_075293873.1|1057213_1057756_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.9	2.4e-14
>prophage 77
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1064270	1069448	2110610		Acinetobacter_phage(50.0%)	2	NA	NA
WP_075293877.1|1064270_1066880_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	25.3	2.8e-20
WP_075293878.1|1066988_1069448_-	glycogen/starch/alpha-glucan phosphorylase	NA	A0A140XAG6	Dickeya_phage	51.9	1.2e-17
>prophage 78
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1079657	1090922	2110610	tRNA	Escherichia_phage(50.0%)	4	NA	NA
WP_075293884.1|1079657_1082441_-	insulinase family protein	NA	A0A2H4UVM3	Bodo_saltans_virus	25.1	2.5e-06
WP_075293885.1|1085029_1086697_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	75.0	1.9e-248
WP_075293886.1|1086892_1087846_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	NA	A1IMD5	Streptococcus_phage	27.9	1.4e-25
WP_075293887.1|1087832_1090922_-	tetrathionate reductase subunit TtrA	NA	A0A077SK27	Escherichia_phage	23.4	1.6e-06
>prophage 79
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1101896	1118163	2110610		Acidithiobacillus_phage(12.5%)	15	NA	NA
WP_012340536.1|1101896_1103762_-	signal peptide peptidase SppA	NA	K4HZZ6	Acidithiobacillus_phage	27.5	7.7e-12
WP_075293895.1|1103889_1104444_+	NAD(P)H nitroreductase	NA	NA	NA	NA	NA
WP_075293896.1|1104509_1105166_-	GTP cyclohydrolase I FolE	NA	M1Q6X8	Cellulophaga_phage	50.5	3.5e-52
WP_075293897.1|1105311_1106526_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_011609065.1|1106533_1107262_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
WP_075293898.1|1107334_1107967_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.6	4.6e-25
WP_075293899.1|1108165_1110772_-	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	34.9	2.1e-92
WP_041604193.1|1111052_1111640_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_011609069.1|1111629_1113144_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	41.2	4.8e-89
WP_012340543.1|1113156_1113657_-	colicin V biosynthesis protein	NA	NA	NA	NA	NA
WP_041604195.1|1114351_1115287_+	KpsF/GutQ family sugar isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	33.2	4.1e-38
WP_075293900.1|1115291_1115843_+	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	43.3	1.0e-20
WP_011609074.1|1116179_1116665_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_012340546.1|1116681_1117179_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_075293901.1|1117407_1118163_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	34.6	1.5e-30
>prophage 80
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1122476	1124501	2110610		Brevibacillus_phage(100.0%)	1	NA	NA
WP_075293903.1|1122476_1124501_-	exodeoxyribonuclease V subunit alpha	NA	A0A0K2FLP8	Brevibacillus_phage	22.1	2.2e-12
>prophage 81
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1136658	1152253	2110610	tRNA	Escherichia_phage(14.29%)	16	NA	NA
WP_075293911.1|1136658_1138077_-	replicative DNA helicase	NA	A0A077SK18	Escherichia_phage	66.3	5.2e-162
WP_011609095.1|1138228_1139308_-	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A0B6VT43	Edwardsiella_phage	44.8	1.6e-78
WP_075293912.1|1139414_1140665_-	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
WP_011609097.1|1140661_1141345_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	40.1	8.7e-38
WP_075293913.1|1141365_1142556_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_075293914.1|1142726_1143668_-	2-hydroxyacid dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	30.5	4.4e-24
WP_012340566.1|1143779_1144634_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	40.1	2.3e-48
WP_011609101.1|1144647_1145442_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_012340568.1|1145425_1146331_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_075293915.1|1146345_1146837_-	RDD family protein	NA	NA	NA	NA	NA
WP_075293916.1|1146888_1147971_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	50.0	3.7e-06
WP_081376589.1|1148008_1148842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609106.1|1149034_1149496_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_075293917.1|1149519_1149843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609108.1|1149848_1150436_-	VOC family protein	NA	NA	NA	NA	NA
WP_075293918.1|1150519_1152253_+|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L2F0	Tupanvirus	34.9	2.2e-85
>prophage 82
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1160295	1167452	2110610	lysis	Pseudomonas_phage(40.0%)	8	NA	NA
WP_011609115.1|1160295_1161426_+	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	78.1	2.3e-168
WP_075293921.1|1161491_1161749_+	2Fe-2S ferredoxin-like protein	NA	G9IAA2	Pseudomonas_phage	58.7	5.6e-14
WP_041605296.1|1161802_1162990_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	46.7	7.2e-80
WP_075293922.1|1163176_1164529_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA	NA
WP_075293923.1|1164531_1165221_-|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_075293924.1|1165217_1165634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041604213.1|1165759_1166263_+	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	42.8	8.1e-25
WP_075293925.1|1166252_1167452_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	31.2	3.6e-55
>prophage 83
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1173418	1173703	2110610		Bacillus_phage(100.0%)	1	NA	NA
WP_011609129.1|1173418_1173703_-	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	43.3	1.2e-12
>prophage 84
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1182663	1183389	2110610		Flavobacterium_phage(100.0%)	1	NA	NA
WP_011609137.1|1182663_1183389_-	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	46.7	1.4e-25
>prophage 85
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1190773	1194688	2110610		Indivirus(100.0%)	1	NA	NA
WP_075293960.1|1190773_1194688_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SDF7	Indivirus	29.7	6.1e-51
>prophage 86
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1198721	1199669	2110610		Tupanvirus(100.0%)	1	NA	NA
WP_011609150.1|1198721_1199669_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	38.1	2.8e-42
>prophage 87
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1204245	1205694	2110610		Erwinia_phage(100.0%)	1	NA	NA
WP_075293950.1|1204245_1205694_+	membrane-bound lytic murein transglycosylase MltF	NA	G0YQ82	Erwinia_phage	35.8	1.7e-06
>prophage 88
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1214032	1214677	2110610		Planktothrix_phage(100.0%)	1	NA	NA
WP_011609165.1|1214032_1214677_-	thiamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.1	4.5e-28
>prophage 89
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1240666	1242415	2110610		Bacillus_phage(100.0%)	1	NA	NA
WP_041605303.1|1240666_1242415_-	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	29.9	6.9e-55
>prophage 90
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1245813	1247777	2110610		unidentified_phage(50.0%)	2	NA	NA
WP_075294359.1|1245813_1247304_+	polynucleotide adenylyltransferase PcnB	NA	H7BUW3	unidentified_phage	32.8	2.2e-25
WP_012340643.1|1247300_1247777_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4W084	Pandoravirus	35.1	3.9e-13
>prophage 91
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1252567	1258611	2110610		Enterobacteria_phage(33.33%)	6	NA	NA
WP_075294355.1|1252567_1253569_+	HTH-type transcriptional repressor PurR	NA	C6ZCU4	Enterobacteria_phage	30.8	1.4e-31
WP_012340651.1|1253619_1254591_-	HTH-type transcriptional regulator CysB	NA	NA	NA	NA	NA
WP_012340652.1|1254652_1254979_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_075294354.1|1255080_1256109_-	porin OmpA	NA	NA	NA	NA	NA
WP_075294353.1|1256251_1257628_-	murein DD-endopeptidase MepM	NA	A0A2K9VGT1	Pontimonas_phage	53.3	1.4e-18
WP_075294352.1|1257816_1258611_+	zinc ABC transporter ATP-binding protein ZnuC	NA	G3M9Y6	Bacillus_virus	28.6	8.3e-16
>prophage 92
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1262873	1263524	2110610		Staphylococcus_phage(100.0%)	1	NA	NA
WP_075294349.1|1262873_1263524_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	47.2	5.3e-45
>prophage 93
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1270086	1272283	2110610		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
WP_075294343.1|1270086_1271133_-	outer membrane-stress sensor serine endopeptidase DegS	NA	A0A1B1IT49	uncultured_Mediterranean_phage	32.4	1.2e-17
WP_075294342.1|1271152_1272283_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	32.8	2.4e-48
>prophage 94
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1299000	1305259	2110610	tRNA	Moraxella_phage(33.33%)	5	NA	NA
WP_075294070.1|1299000_1301028_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	32.3	1.9e-80
WP_075294069.1|1301092_1302520_+	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_011609228.1|1302596_1303160_+	YcbK family protein	NA	NA	NA	NA	NA
WP_075294068.1|1303235_1303868_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	32.3	1.2e-25
WP_075320170.1|1303969_1305259_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.6	1.4e-97
>prophage 95
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1311329	1314395	2110610		Bacillus_phage(50.0%)	2	NA	NA
WP_075294063.1|1311329_1312532_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0N6W8I1	Bacillus_phage	45.0	9.4e-11
WP_075294062.1|1312547_1314395_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.2	9.8e-68
>prophage 96
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1330932	1332895	2110610		Bacillus_virus(50.0%)	2	NA	NA
WP_011609312.1|1330932_1332051_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	G3M9Y6	Bacillus_virus	37.1	1.2e-31
WP_011609313.1|1332034_1332895_+	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	27.6	1.2e-15
>prophage 97
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1339259	1341905	2110610		Bacillus_virus(100.0%)	1	NA	NA
WP_075294511.1|1339259_1341905_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	31.4	3.2e-104
>prophage 98
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1347836	1354190	2110610	tRNA	Bacillus_virus(25.0%)	7	NA	NA
WP_011609328.1|1347836_1348631_-	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	31.2	7.8e-22
WP_075294504.1|1348862_1349438_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_011609330.1|1349418_1349937_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_012340728.1|1349951_1350677_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	1.3e-23
WP_075294503.1|1350679_1351204_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_075294502.1|1351242_1352103_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	26.4	1.9e-05
WP_075294501.1|1352138_1354190_-|tRNA	methionine--tRNA ligase	tRNA	H2EDI7	Moumouvirus	29.7	1.3e-49
>prophage 99
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1368426	1369728	2110610		Streptococcus_phage(100.0%)	1	NA	NA
WP_011608718.1|1368426_1369728_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	59.5	5.2e-132
>prophage 100
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1373744	1384147	2110610	integrase	Staphylococcus_phage(50.0%)	8	1378361:1378391	1380286:1380316
WP_075294494.1|1373744_1374725_+	hypothetical protein	NA	A0A059NT88	Lactococcus_phage	27.6	3.2e-17
WP_087449188.1|1374814_1376044_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	22.7	2.1e-10
WP_012340746.1|1376056_1376617_+	adenosine monophosphate-protein transferase	NA	NA	NA	NA	NA
WP_075294492.1|1376670_1378284_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	48.9	5.3e-126
1378361:1378391	attL	AAACTTACGCTTGGGAACAGAGGAAGTTGGG	NA	NA	NA	NA
WP_087449187.1|1378386_1378869_+	hypothetical protein	NA	A0A2H4PQP5	Staphylococcus_phage	31.0	1.3e-08
WP_075294490.1|1378881_1379808_-|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	48.4	5.2e-78
WP_087449186.1|1379828_1380266_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_075294488.1|1382518_1384147_-	CTP synthase (glutamine hydrolyzing)	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.2	1.5e-152
1380286:1380316	attR	CCCAACTTCCTCTGTTCCCAAGCGTAAGTTT	NA	NA	NA	NA
>prophage 101
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1391151	1404146	2110610		Ostreococcus_lucimarinus_virus(33.33%)	5	NA	NA
WP_075294518.1|1391151_1392786_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A0P0CRP3	Ostreococcus_lucimarinus_virus	30.3	2.9e-39
WP_075294483.1|1392785_1393421_-	SCP2 domain-containing protein	NA	NA	NA	NA	NA
WP_075294482.1|1393429_1394215_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_012340783.1|1394397_1395108_+	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	NA	A0A2I7SAW6	Vibrio_phage	57.1	2.0e-61
WP_087437262.1|1396019_1404146_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	37.7	2.6e-48
>prophage 102
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1415873	1420057	2110610		Burkholderia_phage(40.0%)	5	NA	NA
WP_075294478.1|1415873_1416461_-	SocA family protein	NA	A0A139ZPG5	Marinitoga_camini_virus	29.7	5.0e-10
WP_075294477.1|1416473_1416767_-	type II toxin-antitoxin system HigB family toxin	NA	A0A0P0ZE17	Stx2-converting_phage	33.8	6.8e-08
WP_011608692.1|1416905_1417301_-	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	34.5	5.6e-05
WP_041604501.1|1417336_1417603_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	43.5	2.7e-11
WP_075294476.1|1418146_1420057_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	31.1	3.1e-48
>prophage 103
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1424276	1430851	2110610	integrase	Escherichia_phage(66.67%)	5	1418799:1418813	1426680:1426694
1418799:1418813	attL	CCGGAAATTGCTTTT	NA	NA	NA	NA
WP_075294468.1|1424276_1425524_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1B5FPC6	Escherichia_phage	31.5	6.0e-53
WP_075294229.1|1426027_1427098_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
1426680:1426694	attR	CCGGAAATTGCTTTT	NA	NA	NA	NA
WP_075294230.1|1427110_1428214_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_075294231.1|1428332_1429820_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	37.3	5.5e-53
WP_075294232.1|1430092_1430851_+	DeoR/GlpR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	29.7	8.8e-23
>prophage 104
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1438208	1438778	2110610		Bacillus_virus(100.0%)	1	NA	NA
WP_011608666.1|1438208_1438778_-	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	28.4	2.4e-09
>prophage 105
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1443766	1444423	2110610		Acaryochloris_phage(100.0%)	1	NA	NA
WP_012340875.1|1443766_1444423_+	ribonuclease T	NA	L0N5X9	Acaryochloris_phage	24.2	8.4e-06
>prophage 106
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1447497	1449678	2110610		Bacillus_phage(100.0%)	1	NA	NA
WP_075294237.1|1447497_1449678_-	DNA helicase II	NA	A7KV33	Bacillus_phage	36.3	2.5e-115
>prophage 107
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1457146	1459558	2110610		Moraxella_phage(100.0%)	1	NA	NA
WP_011608646.1|1457146_1459558_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.3	1.8e-223
>prophage 108
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1464833	1469258	2110610	transposase	Streptococcus_phage(25.0%)	7	NA	NA
WP_075294247.1|1464833_1465610_-	peroxide stress protein YaaA	NA	A0A1X9I5I0	Streptococcus_phage	21.9	1.8e-15
WP_011608638.1|1465625_1466297_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	52.6	5.2e-51
WP_075319838.1|1466593_1467730_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1B0VCD8	Salmonella_phage	56.4	2.3e-120
WP_075293968.1|1467966_1468200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293967.1|1468205_1468535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293966.1|1468639_1468858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011608637.1|1468874_1469258_+	autonomous glycyl radical cofactor GrcA	NA	A0A2K9VG12	Escherichia_phage	68.0	4.9e-30
>prophage 109
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1481375	1484084	2110610		Mycobacterium_phage(100.0%)	1	NA	NA
WP_075294135.1|1481375_1484084_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	46.6	4.9e-84
>prophage 110
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1487942	1506702	2110610	transposase,tRNA	Ostreococcus_lucimarinus_virus(12.5%)	17	NA	NA
WP_011609346.1|1487942_1489205_+	inorganic phosphate transporter	NA	A0A0P0CDM4	Ostreococcus_lucimarinus_virus	34.3	5.7e-59
WP_012341227.1|1489309_1489921_+	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_075294137.1|1489925_1491179_+	multifunctional CCA addition/repair protein	NA	A0A0F6YPT7	Sinorhizobium_phage	46.5	3.9e-76
WP_075294138.1|1491357_1493265_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.7	2.9e-147
WP_075294139.1|1493362_1494484_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	57.1	4.8e-17
WP_157665520.1|1494834_1494981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075294140.1|1494980_1495196_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_075294154.1|1495304_1495562_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_075294141.1|1496050_1498321_+	ribonucleoside-diphosphate reductase subunit alpha	NA	I3UMG3	Colwellia_phage	66.8	8.6e-300
WP_075294142.1|1498403_1498943_-	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
WP_012341220.1|1498973_1500092_-|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	tRNA	NA	NA	NA	NA
WP_075294143.1|1500344_1502348_-	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	38.9	7.9e-47
WP_012341218.1|1502378_1502918_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.0	6.0e-26
WP_075294144.1|1502988_1503942_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
WP_075294145.1|1503965_1504739_-	TSUP family transporter	NA	NA	NA	NA	NA
WP_075294146.1|1504747_1505587_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
WP_011609360.1|1505619_1506702_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	44.8	5.2e-85
>prophage 111
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1510016	1511423	2110610		Staphylococcus_phage(100.0%)	1	NA	NA
WP_075294148.1|1510016_1511423_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	28.4	1.2e-22
>prophage 112
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1520280	1521615	2110610		Indivirus(100.0%)	1	NA	NA
WP_075294153.1|1520280_1521615_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.8	6.2e-40
>prophage 113
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1546682	1550556	2110610		Brevibacillus_phage(50.0%)	4	NA	NA
WP_075293455.1|1546682_1547576_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	30.1	9.3e-32
WP_075293454.1|1547572_1548772_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_075293453.1|1548772_1549588_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_075293452.1|1549650_1550556_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	45.4	2.7e-63
>prophage 114
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1558025	1567338	2110610	tRNA	uncultured_Mediterranean_phage(25.0%)	9	NA	NA
WP_041604985.1|1558025_1559348_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	30.3	3.4e-46
WP_075293448.1|1559441_1560152_+|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_041604983.1|1560168_1560747_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_012341182.1|1560845_1561214_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_075293447.1|1561262_1562150_-	tyrosine recombinase XerC	NA	S5W9T9	Leptospira_phage	28.3	2.1e-15
WP_075293446.1|1562446_1563331_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_012341178.1|1563357_1563990_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_075293445.1|1564227_1566147_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.5	2.9e-70
WP_075293444.1|1566270_1567338_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	61.9	7.5e-113
>prophage 115
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1574490	1581893	2110610	tRNA	uncultured_Mediterranean_phage(75.0%)	6	NA	NA
WP_075293441.1|1574490_1576389_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	31.4	3.6e-41
WP_011609465.1|1576526_1576871_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_075293440.1|1577445_1578414_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	40.0	1.2e-45
WP_075293439.1|1578413_1580276_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_012341169.1|1580307_1580607_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	38.7	1.4e-08
WP_075293465.1|1580762_1581893_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	46.0	7.5e-87
>prophage 116
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1587629	1649427	2110610	protease,tRNA,transposase,integrase	Escherichia_phage(14.29%)	60	1599751:1599767	1642683:1642699
WP_075293436.1|1587629_1589006_-|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	77.1	4.9e-165
WP_012341159.1|1589147_1589957_-	DNA ligase	NA	A0A1X9VNU1	Mimivirus	34.1	2.4e-34
WP_011609479.1|1590124_1591660_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_075293435.1|1591790_1592324_-	ribosome-associated protein	NA	NA	NA	NA	NA
WP_075293434.1|1592470_1593823_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_075293433.1|1593888_1595187_-	adenylosuccinate synthase	NA	A0A285PX35	Cedratvirus	34.9	1.3e-66
WP_012341153.1|1595687_1596716_+	sugar kinase	NA	NA	NA	NA	NA
WP_075293432.1|1596737_1598528_+	beta-glucuronidase	NA	B9U1V4	Vaccinia_virus	44.2	1.3e-136
WP_075293431.1|1599337_1599745_-	hypothetical protein	NA	NA	NA	NA	NA
1599751:1599767	attL	CTCCTAAAGTAAAAATA	NA	NA	NA	NA
WP_011609493.1|1600149_1601499_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_075293430.1|1602658_1603285_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_075293429.1|1603386_1604628_+	uracil permease	NA	NA	NA	NA	NA
WP_012341146.1|1604714_1605410_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_011609498.1|1605527_1605851_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	49.0	4.3e-19
WP_075293428.1|1606015_1607125_-	methionine biosynthesis PLP-dependent protein	NA	A0A1V0SL56	Klosneuvirus	25.0	3.6e-17
WP_135026467.1|1608315_1609620_+	replicative DNA helicase	NA	A0A077SK18	Escherichia_phage	44.8	3.1e-84
WP_075293427.1|1609609_1611316_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_011609865.1|1611326_1611878_+	DUF2857 domain-containing protein	NA	NA	NA	NA	NA
WP_081376612.1|1612040_1613270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293425.1|1614176_1614695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341122.1|1614905_1615205_-	putative addiction module antidote protein	NA	NA	NA	NA	NA
WP_012341117.1|1616159_1616378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293424.1|1616674_1616857_+	ribbon-helix-helix protein, CopG family	NA	Q19US2	Mannheimia_phage	67.8	2.2e-12
WP_075293423.1|1617160_1617382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_135026463.1|1617350_1617632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041604971.1|1617747_1617951_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_081376610.1|1618476_1619316_-	nucleoside triphosphate hydrolase	NA	H7BWC4	unidentified_phage	38.5	1.6e-38
WP_081376609.1|1619287_1620475_-|integrase	site-specific integrase	integrase	A0A1B5FPC6	Escherichia_phage	32.1	6.8e-46
WP_075293421.1|1620671_1620941_+	DUF1845 domain-containing protein	NA	NA	NA	NA	NA
WP_011609868.1|1620981_1621494_+	DUF3158 family protein	NA	NA	NA	NA	NA
WP_081376608.1|1621641_1622439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011609870.1|1622442_1622652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293420.1|1622655_1622850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293460.1|1624932_1626255_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_075293419.1|1626257_1628285_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_075293418.1|1628286_1628697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293459.1|1629059_1629521_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_075293417.1|1629694_1629892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293416.1|1629894_1630395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293415.1|1630447_1630870_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_075293414.1|1631491_1632496_-	patatin-like phospholipase family protein	NA	A0A1B2LRS3	Wolbachia_phage	27.6	1.2e-19
WP_075293458.1|1632479_1633319_-	ThiF family adenylyltransferase	NA	NA	NA	NA	NA
WP_075293413.1|1634166_1634559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293412.1|1634671_1635886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293411.1|1636786_1637266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293410.1|1637377_1638274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293409.1|1638270_1638522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609878.1|1638807_1639530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041604434.1|1639624_1639912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293408.1|1639913_1641944_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	31.2	1.2e-47
WP_075293407.1|1642706_1643171_+	DUF3577 domain-containing protein	NA	NA	NA	NA	NA
1642683:1642699	attR	TATTTTTACTTTAGGAG	NA	NA	NA	NA
WP_075293406.1|1643294_1643513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293405.1|1643611_1644028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293403.1|1644610_1645258_+	DUF3560 domain-containing protein	NA	NA	NA	NA	NA
WP_157665519.1|1645334_1645475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293402.1|1645627_1645960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293401.1|1646177_1646624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293400.1|1646642_1647572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075319813.1|1647827_1648964_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1B0VCD8	Salmonella_phage	53.7	5.2e-112
WP_075319814.1|1649010_1649427_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	64.2	1.5e-48
>prophage 117
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1659700	1666459	2110610		Moraxella_phage(100.0%)	1	NA	NA
WP_081376596.1|1659700_1666459_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.0	7.1e-39
>prophage 118
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1675776	1676412	2110610		Cafeteria_roenbergensis_virus(100.0%)	1	NA	NA
WP_011609511.1|1675776_1676412_-	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	38.5	1.6e-22
>prophage 119
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1680001	1683185	2110610		Dickeya_phage(50.0%)	3	NA	NA
WP_011609516.1|1680001_1681336_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	80.2	3.1e-55
WP_075294125.1|1681427_1682258_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_075294126.1|1682324_1683185_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.0	1.1e-50
>prophage 120
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1687379	1690325	2110610		Mannheimia_phage(33.33%)	3	NA	NA
WP_075294131.1|1687379_1687664_-	DNA helicase UvrD	NA	A0A0M3LNN9	Mannheimia_phage	67.1	7.8e-25
WP_075294132.1|1687656_1688271_-	DUF4376 domain-containing protein	NA	F6MIL9	Haemophilus_phage	67.2	5.6e-44
WP_087437309.1|1688267_1690325_-	hypothetical protein	NA	Q94MY0	Haemophilus_virus	50.1	5.9e-106
>prophage 121
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1694039	1747747	2110610	terminase,protease,transposase,integrase,capsid	Mannheimia_phage(41.38%)	55	1714073:1714090	1743582:1743599
WP_075294028.1|1694039_1695035_-|capsid	N4-gp56 family major capsid protein	capsid	NA	NA	NA	NA
WP_012341716.1|1695060_1695924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609533.1|1696001_1696184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609534.1|1696281_1696584_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_075294026.1|1705162_1707340_-	hypothetical protein	NA	S4S2T1	Puniceispirillum_phage	25.9	3.4e-43
WP_011609539.1|1707341_1708889_-	hypothetical protein	NA	A0A1B1IVN4	uncultured_Mediterranean_phage	42.0	6.4e-97
WP_075294025.1|1708888_1709584_-|terminase	terminase	terminase	NA	NA	NA	NA
WP_041604566.1|1709608_1709752_-	hypothetical protein	NA	A0A0M3LNX0	Mannheimia_phage	69.8	9.9e-13
WP_075294034.1|1709780_1710107_-	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
WP_075294024.1|1710079_1710619_-	lysozyme	NA	Q19UR6	Mannheimia_phage	49.7	9.9e-45
WP_012341704.1|1710608_1710845_-	hypothetical protein	NA	A0A0M3LR95	Mannheimia_phage	70.5	2.7e-23
WP_075319827.1|1711133_1712270_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1B0VCD8	Salmonella_phage	56.4	2.6e-119
WP_075319826.1|1712316_1712733_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	63.5	7.4e-48
WP_075293599.1|1713001_1713841_-	KilA-N domain-containing protein	NA	Q4ZC41	Staphylococcus_virus	52.6	1.6e-73
WP_075293600.1|1713991_1714396_-	hypothetical protein	NA	NA	NA	NA	NA
1714073:1714090	attL	TGTTTCGCTTATATCCAA	NA	NA	NA	NA
WP_075293601.1|1714385_1714973_-	recombination protein NinG	NA	A0A0M3LTG3	Mannheimia_phage	55.1	1.7e-50
WP_075293602.1|1715051_1715330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293603.1|1715342_1715969_-	DUF1367 family protein	NA	K7PKS6	Enterobacteria_phage	28.1	3.1e-18
WP_075293604.1|1716005_1716536_-	phage N-6-adenine-methyltransferase	NA	A0A0M3LNW2	Mannheimia_phage	67.2	4.8e-68
WP_075293605.1|1716545_1717238_-	replication protein P	NA	A0A077KCC8	Edwardsiella_phage	34.6	1.9e-24
WP_087449175.1|1718022_1718271_-	hypothetical protein	NA	A0A0M3LR73	Mannheimia_phage	72.2	3.5e-21
WP_011609558.1|1718313_1718766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011609559.1|1718810_1719017_-	helix-turn-helix transcriptional regulator	NA	A0A0N7C2U7	Escherichia_phage	50.0	4.9e-13
WP_011609560.1|1719155_1719791_+	LexA family transcriptional repressor	NA	G9L676	Escherichia_phage	45.6	7.8e-41
WP_075293607.1|1720099_1721044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293608.1|1721055_1721613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293609.1|1722020_1722212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075293610.1|1722443_1722623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293611.1|1722619_1723036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293612.1|1723165_1723654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293613.1|1723794_1724817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293614.1|1724840_1725059_-	hypothetical protein	NA	A0A0M3LQV3	Mannheimia_phage	79.2	8.1e-22
WP_087449174.1|1725709_1726369_+	hypothetical protein	NA	B6SCX2	Bacteriophage	53.2	1.0e-27
WP_075293616.1|1726455_1726740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087437242.1|1726736_1727159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_087437307.1|1728139_1728847_+	KilA-N domain-containing protein	NA	K7PH30	Enterobacteria_phage	46.6	2.9e-20
WP_075293616.1|1728933_1729218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293617.1|1729214_1729652_+	hypothetical protein	NA	A0A0M3LSK4	Mannheimia_phage	45.6	3.6e-05
WP_011609572.1|1729648_1729948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293618.1|1729959_1730895_+	recombinase	NA	A0A0M3LNU3	Mannheimia_phage	76.9	7.0e-131
WP_075293619.1|1730887_1731556_+	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	74.0	6.4e-94
WP_087449173.1|1731605_1732646_+	hypothetical protein	NA	A0A0M3LPL3	Mannheimia_phage	68.6	2.8e-11
WP_075293621.1|1732651_1733380_+	hypothetical protein	NA	A0A0M3LPL3	Mannheimia_phage	60.2	9.0e-17
WP_075293622.1|1733408_1734596_+	DNA cytosine methyltransferase	NA	A0A2I7R2G4	Vibrio_phage	46.5	1.6e-95
WP_075293623.1|1734627_1735422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011609578.1|1735434_1735620_+	AlpA family transcriptional regulator	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	43.6	1.7e-09
WP_075293624.1|1735581_1736823_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	41.5	8.8e-89
WP_075293625.1|1737279_1739019_+	C4-dicarboxylic acid transporter DauA	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.9	5.1e-34
WP_075293626.1|1739061_1740438_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_075293627.1|1740587_1741385_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_012341088.1|1741454_1742714_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_075293701.1|1742747_1744139_-	type II/IV secretion system protein	NA	NA	NA	NA	NA
1743582:1743599	attR	TGTTTCGCTTATATCCAA	NA	NA	NA	NA
WP_075293628.1|1744521_1745820_+	trigger factor	NA	NA	NA	NA	NA
WP_075293629.1|1745905_1746487_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	62.9	9.0e-60
WP_075293630.1|1746502_1747747_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.0	6.3e-127
>prophage 122
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1757327	1759016	2110610		Aeromonas_phage(100.0%)	1	NA	NA
WP_011608492.1|1757327_1759016_+	solute:sodium symporter family transporter	NA	A0A219Y9P9	Aeromonas_phage	29.3	1.3e-37
>prophage 123
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1763034	1769875	2110610		uncultured_Caudovirales_phage(50.0%)	7	NA	NA
WP_075293634.1|1763034_1764396_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	35.5	4.3e-36
WP_087437236.1|1764397_1765012_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_075293636.1|1765113_1766643_+	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA	NA
WP_075293637.1|1767050_1767713_+	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	56.2	9.3e-29
WP_075293638.1|1767790_1768120_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	53.7	8.2e-26
WP_012341045.1|1768225_1769107_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011608481.1|1769116_1769875_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	25.8	6.7e-15
>prophage 124
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1775836	1777673	2110610		Synechococcus_phage(50.0%)	2	NA	NA
WP_075293644.1|1775836_1776397_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	56.0	5.3e-17
WP_075293645.1|1776491_1777673_+	serine-type D-Ala-D-Ala carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	47.5	4.9e-89
>prophage 125
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1807267	1811854	2110610		Chrysochromulina_ericina_virus(25.0%)	5	NA	NA
WP_075293658.1|1807267_1809118_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.0	3.8e-104
WP_011608438.1|1809159_1809678_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_075293659.1|1809690_1810014_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	51.4	1.2e-26
WP_011608436.1|1810179_1810563_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	82.3	5.7e-55
WP_012340679.1|1810639_1811854_-	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	38.2	1.4e-35
>prophage 126
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1817439	1818222	2110610		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_012340619.1|1817439_1818222_-	glycosyl transferase	NA	Q58M87	Prochlorococcus_phage	38.8	2.4e-31
>prophage 127
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1823686	1824694	2110610		Bacillus_phage(100.0%)	1	NA	NA
WP_075293663.1|1823686_1824694_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.2	4.0e-07
>prophage 128
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1842316	1843054	2110610		Planktothrix_phage(100.0%)	1	NA	NA
WP_012340409.1|1842316_1843054_-	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	36.1	9.7e-27
>prophage 129
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1847666	1850933	2110610	tRNA	Indivirus(50.0%)	3	NA	NA
WP_075293676.1|1847666_1848638_+	octaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	25.4	3.5e-08
WP_012340343.1|1848758_1849502_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_075293677.1|1849553_1850933_-|tRNA	cysteine--tRNA ligase	tRNA	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	33.7	4.6e-46
>prophage 130
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1860889	1862407	2110610		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_075293685.1|1860889_1862407_+	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.0	4.1e-11
>prophage 131
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1871760	1878712	2110610		Vibrio_phage(33.33%)	7	NA	NA
WP_075293690.1|1871760_1872774_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	45.4	1.5e-73
WP_012341754.1|1872838_1873252_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_075293691.1|1873280_1874291_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_075293692.1|1874311_1875265_-	ribokinase	NA	NA	NA	NA	NA
WP_075293693.1|1875348_1876227_-	ribose ABC transporter substrate-binding protein RbsB	NA	C6ZCU4	Enterobacteria_phage	26.0	3.0e-06
WP_012341719.1|1876255_1877215_-	ribose ABC transporter permease	NA	NA	NA	NA	NA
WP_087437306.1|1877224_1878712_-	ribose ABC transporter ATP-binding protein RbsA	NA	A0A2H4PQG7	Staphylococcus_phage	27.7	1.3e-17
>prophage 132
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1885667	1886417	2110610		Planktothrix_phage(100.0%)	1	NA	NA
WP_011608363.1|1885667_1886417_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	1.4e-33
>prophage 133
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1899310	1899571	2110610		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_011608361.1|1899310_1899571_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	54.2	2.6e-19
>prophage 134
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1904759	1905713	2110610		Cyanophage(100.0%)	1	NA	NA
WP_075294018.1|1904759_1905713_+	transaldolase	NA	A0A127KNC6	Cyanophage	31.5	6.3e-10
>prophage 135
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1910000	1929369	2110610	tRNA	Enterobacteria_phage(11.11%)	14	NA	NA
WP_075294020.1|1910000_1912571_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	33.8	9.3e-125
WP_075294021.1|1912736_1916213_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.6	1.8e-195
WP_075294022.1|1916393_1917602_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_081376595.1|1917655_1918609_-	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	35.0	4.2e-30
WP_011608348.1|1919313_1920498_+	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	25.1	6.4e-12
WP_087449170.1|1920673_1921081_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_075293999.1|1921082_1921637_+	transcription termination/antitermination protein NusG	NA	A0A291AUS6	Sinorhizobium_phage	28.3	9.0e-09
WP_075294000.1|1921797_1922910_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.9	4.4e-63
WP_075293998.1|1923067_1923856_+	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_075293997.1|1923858_1924323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011608342.1|1924375_1924861_+	type 3 dihydrofolate reductase	NA	A0A076GDN3	Bacillus_phage	43.2	1.4e-34
WP_011608341.1|1924946_1925891_+	bifunctional riboflavin kinase/FAD synthetase	NA	A0A1V0SD03	Indivirus	29.0	1.7e-07
WP_075293996.1|1925988_1926537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293995.1|1926555_1929369_+|tRNA	isoleucine--tRNA ligase	tRNA	K7YVP8	Megavirus	27.0	6.0e-85
>prophage 136
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1942593	1943853	2110610		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_075293523.1|1942593_1943853_-	ATP-dependent RNA helicase RhlB	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.1	1.7e-39
>prophage 137
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1948014	1948245	2110610		Ralstonia_phage(100.0%)	1	NA	NA
WP_011608321.1|1948014_1948245_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	50.0	4.0e-11
>prophage 138
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1961008	1974653	2110610		Lactococcus_phage(16.67%)	16	NA	NA
WP_087437230.1|1961008_1963423_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.3	3.7e-67
WP_011608302.1|1963426_1963930_-	chorismate lyase	NA	NA	NA	NA	NA
WP_075293532.1|1964046_1964709_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_011608300.1|1964774_1964993_-	acetolactate synthase 2 small subunit	NA	NA	NA	NA	NA
WP_012340456.1|1964996_1966673_-	acetolactate synthase 2 catalytic subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	33.5	7.8e-64
WP_075293533.1|1966764_1967577_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	F8WPX6	Bacillus_phage	30.5	3.6e-22
WP_005542835.1|1967682_1967853_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_011608297.1|1967864_1968101_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_011608296.1|1968321_1968990_-	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_075293534.1|1969162_1970389_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	29.6	1.6e-34
WP_011608294.1|1970385_1970841_+	dUTP diphosphatase	NA	G0YQD9	Erwinia_phage	59.9	4.4e-46
WP_011608293.1|1970840_1971500_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_012341336.1|1971534_1971759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011608291.1|1971771_1972416_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA	NA
WP_075293535.1|1972472_1973549_-	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_075293536.1|1973552_1974653_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	28.9	1.2e-41
>prophage 139
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	1980266	1988254	2110610		Clostridium_phage(20.0%)	10	NA	NA
WP_011608283.1|1980266_1980746_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	31.9	7.7e-17
WP_075293539.1|1980898_1981468_-	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.0	2.7e-32
WP_075293540.1|1981524_1982532_+	aminodeoxychorismate synthase component I	NA	A0A0B5J984	Pandoravirus	30.5	1.7e-10
WP_075293541.1|1982680_1983262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075293542.1|1983322_1983712_+	RidA family protein	NA	NA	NA	NA	NA
WP_012341067.1|1983941_1984277_+	competence protein ComE	NA	NA	NA	NA	NA
WP_075293543.1|1984466_1985063_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	A0A1K0ISQ7	Cassava_brown_streak_virus	33.0	3.2e-12
WP_075293544.1|1985062_1986241_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_075293545.1|1986336_1986996_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_075293546.1|1987021_1988254_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	48.1	1.1e-104
>prophage 140
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	2007791	2012598	2110610		Streptococcus_phage(33.33%)	5	NA	NA
WP_075290600.1|2007791_2009111_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	28.1	1.1e-33
WP_080502951.1|2009131_2009842_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_012341040.1|2010015_2010660_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	44.1	1.0e-40
WP_075290602.1|2011007_2011247_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_075290604.1|2011320_2012598_+	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA	A0A0C5K935	Enterococcus_phage	47.5	6.7e-92
>prophage 141
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	2035197	2036706	2110610		Staphylococcus_phage(100.0%)	1	NA	NA
WP_011608210.1|2035197_2036706_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	NA	A0A2H4PQG7	Staphylococcus_phage	32.1	1.9e-21
>prophage 142
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	2048850	2050391	2110610	tRNA	Synechococcus_phage(100.0%)	2	NA	NA
WP_075293575.1|2048850_2049363_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	5.7e-18
WP_075293576.1|2049437_2050391_+|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	26.5	9.1e-09
>prophage 143
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	2053843	2055603	2110610		Lactobacillus_phage(50.0%)	2	NA	NA
WP_011608195.1|2053843_2054758_-	DNA-binding transcriptional regulator OxyR	NA	A0A2P0ZL89	Lactobacillus_phage	22.1	1.6e-07
WP_012341008.1|2054880_2055603_+	glutathione peroxidase	NA	A0A1D8KSL1	Synechococcus_phage	57.2	4.5e-45
>prophage 144
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	2059226	2060717	2110610		Bacillus_virus(100.0%)	1	NA	NA
WP_075293579.1|2059226_2060717_-	sugar ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.8	8.0e-12
>prophage 145
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	2072929	2073973	2110610		Indivirus(100.0%)	1	NA	NA
WP_075293582.1|2072929_2073973_-	ThiF family adenylyltransferase	NA	A0A1V0SCZ9	Indivirus	31.2	1.2e-09
>prophage 146
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	2077922	2091053	2110610		Escherichia_phage(57.14%)	13	NA	NA
WP_012340988.1|2077922_2078555_-	aldolase	NA	A0A077SK32	Escherichia_phage	59.7	3.8e-64
WP_075293586.1|2078551_2079793_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	53.3	2.6e-112
WP_012340986.1|2079794_2080703_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	70.8	3.3e-109
WP_012340985.1|2080873_2081632_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	48.8	1.9e-57
WP_075293587.1|2081632_2082058_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_012340984.1|2082057_2082621_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_075293588.1|2082754_2083303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041603876.1|2083299_2083851_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	21.8	2.2e-07
WP_075293589.1|2083854_2084670_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_041605184.1|2084811_2087382_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	22.0	9.2e-32
WP_075293590.1|2087529_2088990_-	aminoacyl-histidine dipeptidase	NA	NA	NA	NA	NA
WP_011608161.1|2089114_2089579_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_075293591.1|2089655_2091053_-	nicotinate phosphoribosyltransferase	NA	A0A1B0V392	Roseobacter_phage	51.0	2.3e-130
>prophage 147
NZ_CP018807	Histophilus somni strain USDA-ARS-USMARC-63373 chromosome, complete genome	2110610	2106609	2108484	2110610		Catovirus(100.0%)	1	NA	NA
WP_075294273.1|2106609_2108484_+	DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	38.2	4.7e-86
