assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002157205.1_ASM215720v1	NZ_CP021358	Kushneria marisflavi strain SW32 chromosome, complete genome	1	1220595-1220675	1	CRISPRCasFinder	no		DEDDh,csa3,DinG,Cas9_archaeal,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	ATGGCGCCGCCGACGAGGAACGAG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,Cas9_archaeal,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|141aa|up_4|NZ_CP021358.1_1213337_1213760_-,NA|186aa|up_3|NZ_CP021358.1_1213756_1214314_-,NA|89aa|down_9|NZ_CP021358.1_1231437_1231704_-	NA|290aa|up_9|NZ_CP021358.1_1208278_1209148_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|263aa|up_8|NZ_CP021358.1_1209144_1209933_+	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	NA|758aa|up_7|NZ_CP021358.1_1210036_1212310_-	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|44aa|up_6|NZ_CP021358.1_1212610_1212742_-	COG5510, COG5510, Predicted small secreted protein [Function unknown]	NA|140aa|up_5|NZ_CP021358.1_1212916_1213336_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|141aa|up_4|NZ_CP021358.1_1213337_1213760_-	NA	NA|186aa|up_3|NZ_CP021358.1_1213756_1214314_-	NA	NA|673aa|up_2|NZ_CP021358.1_1214609_1216628_+	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|378aa|up_1|NZ_CP021358.1_1216754_1217888_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|489aa|up_0|NZ_CP021358.1_1217929_1219396_-	pfam02646, RmuC, RmuC family	NA|188aa|down_0|NZ_CP021358.1_1220868_1221432_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|187aa|down_1|NZ_CP021358.1_1221482_1222043_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|553aa|down_2|NZ_CP021358.1_1222274_1223933_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|207aa|down_3|NZ_CP021358.1_1224022_1224643_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|428aa|down_4|NZ_CP021358.1_1224703_1225987_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|351aa|down_5|NZ_CP021358.1_1226091_1227144_-	cd13668, PBP2_TRAP_UehA_TeaA, Periplasmic substrate-binding component of osmoregulatory TRAP transporters TeaA and UehA; the type 2 periplasmic-binding protein fold	NA|559aa|down_6|NZ_CP021358.1_1227408_1229085_+	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309	NA|284aa|down_7|NZ_CP021358.1_1229078_1229930_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|486aa|down_8|NZ_CP021358.1_1229983_1231441_-	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|89aa|down_9|NZ_CP021358.1_1231437_1231704_-	NA
GCF_002157205.1_ASM215720v1	NZ_CP021358	Kushneria marisflavi strain SW32 chromosome, complete genome	2	1290088-1290405	1,1,2	CRT,PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,DinG,Cas9_archaeal,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CATAGGCAGCTCAGAAAA,GTTCGCTGCCGCATAGGCAGCTCAGAAAA,GTTCGCTGCCGCATAGGCAGCTCAGAAAA	18,29,29	0	0	NA	NA	NA:I-F:I-F	5,4,4	5	Orphan	DEDDh,csa3,DinG,Cas9_archaeal,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|144aa|up_1|NZ_CP021358.1_1288076_1288508_+,NA	NA|264aa|up_9|NZ_CP021358.1_1277149_1277941_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|342aa|up_8|NZ_CP021358.1_1277947_1278973_-	pfam01032, FecCD, FecCD transport family	NA|340aa|up_7|NZ_CP021358.1_1278965_1279985_-	pfam01032, FecCD, FecCD transport family	NA|305aa|up_6|NZ_CP021358.1_1279981_1280896_-	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|704aa|up_5|NZ_CP021358.1_1281006_1283118_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|485aa|up_4|NZ_CP021358.1_1283488_1284943_-	cd03890, M20_pepD, M20 Peptidase D has specificity for beta-alanyl-L-histidine dipeptide	NA|724aa|up_3|NZ_CP021358.1_1285043_1287215_-	COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]	NA|204aa|up_2|NZ_CP021358.1_1287366_1287978_+	PRK10847, PRK10847, DedA family protein	NA|144aa|up_1|NZ_CP021358.1_1288076_1288508_+	NA	NA|420aa|up_0|NZ_CP021358.1_1288736_1289996_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|243aa|down_0|NZ_CP021358.1_1290543_1291272_-	COG2859, COG2859, Uncharacterized protein conserved in bacteria [Function unknown]	NA|763aa|down_1|NZ_CP021358.1_1291434_1293723_-	PRK15061, PRK15061, catalase/peroxidase	NA|575aa|down_2|NZ_CP021358.1_1294133_1295858_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|301aa|down_3|NZ_CP021358.1_1295863_1296766_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|148aa|down_4|NZ_CP021358.1_1296884_1297328_+	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|374aa|down_5|NZ_CP021358.1_1297406_1298528_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|406aa|down_6|NZ_CP021358.1_1298622_1299840_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|297aa|down_7|NZ_CP021358.1_1299882_1300773_-	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|115aa|down_8|NZ_CP021358.1_1300769_1301114_-	COG2372, CopC, Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]	NA|238aa|down_9|NZ_CP021358.1_1301260_1301974_-	cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR
GCF_002157205.1_ASM215720v1	NZ_CP021358	Kushneria marisflavi strain SW32 chromosome, complete genome	3	1390652-1393122	3,2,2,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,csa3,DinG,Cas9_archaeal,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCGCCTGCGGGGAACGG,CGGTTTATCCCCGCGCCTGCGGGGAACGG,CGGTTTATCCCCGCGCCTGCGGGGAACGG,CGGTTTATCCCCGCGCCTGCGGGGAACGG,CGGTTTATCCCCGCGCCTGCGGGGAACGG	29,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	40,40,36,36,36	40	TypeI-E	DEDDh,csa3,DinG,Cas9_archaeal,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|72aa|up_0|NZ_CP021358.1_1389943_1390159_+,NA|138aa|down_8|NZ_CP021358.1_1402708_1403122_+	NA|205aa|up_9|NZ_CP021358.1_1381465_1382080_-	pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase	NA|501aa|up_8|NZ_CP021358.1_1382220_1383723_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|118aa|up_7|NZ_CP021358.1_1384042_1384396_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|307aa|up_6|NZ_CP021358.1_1384493_1385414_-	pfam05661, DUF808, Protein of unknown function (DUF808)	NA|414aa|up_5|NZ_CP021358.1_1385494_1386736_-	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|293aa|up_4|NZ_CP021358.1_1386937_1387816_-	PRK10532, PRK10532, threonine and homoserine efflux system; Provisional	NA|166aa|up_3|NZ_CP021358.1_1388013_1388511_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|160aa|up_2|NZ_CP021358.1_1388503_1388983_-	COG1764, osmC, Organic hydroperoxide reductase [Secondary metabolites biosynthesis, transport and catabolism]	NA|214aa|up_1|NZ_CP021358.1_1389186_1389828_+	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|72aa|up_0|NZ_CP021358.1_1389943_1390159_+	NA	cas2|99aa|down_0|NZ_CP021358.1_1393232_1393529_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP021358.1_1393530_1394451_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|233aa|down_2|NZ_CP021358.1_1394454_1395153_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|261aa|down_3|NZ_CP021358.1_1395152_1395935_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|365aa|down_4|NZ_CP021358.1_1395946_1397041_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|230aa|down_5|NZ_CP021358.1_1397109_1397799_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|567aa|down_6|NZ_CP021358.1_1397795_1399496_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|897aa|down_7|NZ_CP021358.1_1399805_1402496_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|138aa|down_8|NZ_CP021358.1_1402708_1403122_+	NA	NA|231aa|down_9|NZ_CP021358.1_1403115_1403808_+	pfam08808, RES, RES domain
GCF_002157205.1_ASM215720v1	NZ_CP021358	Kushneria marisflavi strain SW32 chromosome, complete genome	4	1403844-1406926	4,3,5	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3	DEDDh,csa3,DinG,Cas9_archaeal,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTCATCCCCGCGGGTGCGGGGAACGC,CGGTTCATCCCCGCGGGTGCGGGGAACGC,CGGTTCATCCCCGCGGGTGCGGGGAACGC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	50,50,46	50	TypeI-E	DEDDh,csa3,DinG,Cas9_archaeal,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|138aa|up_1|NZ_CP021358.1_1402708_1403122_+,NA	cas2|99aa|up_9|NZ_CP021358.1_1393232_1393529_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|up_8|NZ_CP021358.1_1393530_1394451_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|233aa|up_7|NZ_CP021358.1_1394454_1395153_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|261aa|up_6|NZ_CP021358.1_1395152_1395935_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|365aa|up_5|NZ_CP021358.1_1395946_1397041_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|230aa|up_4|NZ_CP021358.1_1397109_1397799_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|567aa|up_3|NZ_CP021358.1_1397795_1399496_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|897aa|up_2|NZ_CP021358.1_1399805_1402496_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|138aa|up_1|NZ_CP021358.1_1402708_1403122_+	NA	NA|231aa|up_0|NZ_CP021358.1_1403115_1403808_+	pfam08808, RES, RES domain	NA|73aa|down_0|NZ_CP021358.1_1407116_1407335_-	pfam11197, DUF2835, Protein of unknown function (DUF2835)	NA|196aa|down_1|NZ_CP021358.1_1407492_1408080_+	TIGR03567, FMN_reductase_NADPH, FMN reductase, SsuE family	NA|363aa|down_2|NZ_CP021358.1_1408176_1409265_-	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|309aa|down_3|NZ_CP021358.1_1409529_1410456_-	PRK12683, PRK12683, transcriptional regulator CysB-like protein; Reviewed	NA|446aa|down_4|NZ_CP021358.1_1410557_1411895_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|438aa|down_5|NZ_CP021358.1_1412052_1413366_-	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|238aa|down_6|NZ_CP021358.1_1413381_1414095_-	TIGR02690, arsenical_resistance_protein_ArsH_putative, arsenical resistance protein ArsH	NA|139aa|down_7|NZ_CP021358.1_1414087_1414504_-	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	csa3|119aa|down_8|NZ_CP021358.1_1414500_1414857_-	pfam12840, HTH_20, Helix-turn-helix domain	NA|304aa|down_9|NZ_CP021358.1_1414960_1415872_+	COG2962, RarD, Predicted permeases [General function prediction only]
